>SFH329 (SFH329Q) /CSM/SF/SFH3-B/SFH329Q.Seq.d/
XXXXXXXXXXTTCCATGCCTATAGAGCCAAGGAAGAGAAAGCTCGTTTAGAGAGTAGCAA
AAATGAAATGGCAAATCGTTTAGCCGGTTTAGAGAATTCATTGGAATCTGAAAAGGTCTC
ACGTGAACAATTAATCAAACAAAAGGATCAACTCAATAGTTTATTGGCATCATTAGAGTC
CGAAGGTGCTGAACGTGAAAAGAGACTTCGTGAATTGGAAGCCAAACTCGATGAAACCTT
AAAGAACTTGGAATTAGAGAAATTGGCTCGTATGGAACTCGAAGCAAGATTAGCCAAGAC
CGAAAAGGATAGAGCTATCTTGGAATTGAAATTAGCTGAAGCCATCGATGAAAAATCAAA
ACTCGAACAACAAATCGAAGCCACCAGAATCAGAGGTGCTGCTGAAGCTCAAGGTCTTGG
TCTCTTAAGAAAGAACCTCGACACTCACGTTCACGATTTACTCAAATGGCAAAAGTTAAC
AATGGAAAACTCTTCCTCATCCTCTATCGATGACCAAATCATCGTCGAAGTCTCTGGTCT
TCCATTTGGTGAACAAGTTAAACATTTAGCCACAAAATTAGAAGCAGAAAATTTAGCAAT
TATGAAACTTTTAAATCAAAAAGAAGANATTTAAAAGCTCAAAAATTAAAATCATCAAAA
TCAAAAAAATAAATTAAAAAAATA

---HAYRAKEEKARLESSKNEMANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESE
GAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAEAIDEKSKL
EQQIEATRIRGAAEAQGLGLLRKNLDTHVHDLLKWQKLTMENSSSSSIDDQIIVEVSGLP
FGEQVKHLATKLEAENLAIMKLLNQKEXI*klkn*nhqnqknklkk

Frame A:
---smpieprkrklv*rvakmkwqiv*pv*rihwnlkrshvnn*snkrinsivywhh*sp
kvlnvkrdfvnwkpnsmkp*rtwn*rnwlvwnskqd*prpkrielswn*n*lkpsmknqn
snnkskppesevllklkvlvs*ertstltftiysngks*qwktlphplsmtkssskslvf
hlvnklni*pqn*kqki*ql*nf*ikkkxfksskikiikikkin*kn


Frame B:
---pcl*sqgressfre*qk*ngksfsrfrefigi*kglt*tinqtkgstq*figiirvr
rc*t*kets*igsqtr*nlkelgireigsygtrskisqdrkg*sylgieis*shr*kikt
rttnrshqnqrcc*ssrswslkkeprhsrsrftqmakvnngklflilyr*pnhrrslwss
iw*ts*tfshkirsrkfsnyetfkskrrxlkaqklksskskk*ikki


Frame C:
---HAYRAKEEKARLESSKNEMANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESE
GAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAEAIDEKSKL
EQQIEATRIRGAAEAQGLGLLRKNLDTHVHDLLKWQKLTMENSSSSSIDDQIIVEVSGLP
FGEQVKHLATKLEAENLAIMKLLNQKEXI*klkn*nhqnqknklkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ276 (VSJ276Q) /CSM/VS/VSJ2-D/VSJ276Q.Seq.d/                       1191   0.0
SLE631 (SLE631Q) /CSM/SL/SLE6-B/SLE631Q.Seq.d/                       1191   0.0
SFH329 (SFH329Q) /CSM/SF/SFH3-B/SFH329Q.Seq.d/                       1191   0.0
SFH314 (SFH314Q) /CSM/SF/SFH3-A/SFH314Q.Seq.d/                       1191   0.0
AFH749 (AFH749Q) /CSM/AF/AFH7-C/AFH749Q.Seq.d/                       1191   0.0
AFJ320 (AFJ320Q) /CSM/AF/AFJ3-A/AFJ320Q.Seq.d/                       1189   0.0
VFJ634 (VFJ634Q) /CSM/VF/VFJ6-B/VFJ634Q.Seq.d/                       1183   0.0
VFD282 (VFD282Q) /CSM/VF/VFD2-D/VFD282Q.Seq.d/                       1183   0.0
SFB524 (SFB524Q) /CSM/SF/SFB5-A/SFB524Q.Seq.d/                       1183   0.0
CHB186 (CHB186Q) /CSM/CH/CHB1-D/CHB186Q.Seq.d/                       1183   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L49527|L49527.1 Dictyostelium discoideum cortexillin I mRNA, complete cds.  1191   0.0    1
AF151101|AF151101.1 Polysphondylium pallidum cortexillin I gene, complete cds.    60   9e-12  5
AL354956|AL354956.13 Human DNA sequence from clone RP5-1113E3 on chromosome  1p36.21-36.33.    48   0.16   1
AL162405|AL162405.3 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP5-869B24.    48   0.16   1
AX430298|AX430298.1 Sequence 80 from Patent WO0240715.             36   0.19   2
AC117401|AC117401.3 Homo sapiens 3 BAC RP11-521J5 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38   0.39   5
AE003695|AE003695.2 Drosophila melanogaster chromosome 3R, section 33 of 118 of the complete sequence.    32   1.2    2
AC009741|AC009741.5 Drosophila melanogaster, chromosome 3R, region 87B-87B, BAC clone BACR44K17, complete sequence.    32   1.2    2
AC017240|AC017240.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    32   1.3    2
AI260167|AI260167.1 LP03868.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP03868 5prime, mRNA sequence.    32   1.7    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9Y0T4) RecName: Full=Cortexillin-1; AltName: Full=Cortexillin ...   268   8e-71
A47297(A47297;A55441) myosin heavy chain form B, nonmuscle - Afr...    50   5e-05
(Q66H89) RecName: Full=Coiled-coil domain-containing protein 41;...    47   7e-04
CP000056_1698(CP000056|pid:none) Streptococcus pyogenes MGAS6180...    46   9e-04
BC166177_1(BC166177|pid:none) Xenopus tropicalis hypothetical pr...    46   0.001
BC043468_1(BC043468|pid:none) Mus musculus coiled-coil domain co...    45   0.001
AF007557_1(AF007557|pid:none) Streptococcus pyogenes Mrp22 gene,...    45   0.002
X78483_2(X78483|pid:none) S.pyogenes (isolate 71-686) FcrA13 gen...    45   0.002
CU469464_459(CU469464|pid:none) Candidatus Phytoplasma mali stra...    45   0.002
A33939(A33939) Fc gamma (IgG) receptor II precursor - Streptococ...    45   0.003

 psg: 0.52  gvh: 0.54  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for SFH329 is cyt

>SFH329Z.Seq
----------TTCCATGCCTATAGAGCCAAGGAAGAGAAAGCTCGTTTAGAGAGTAGCAA
AAATGAAATGGCAAATCGTTTAGCCGGTTTAGAGAATTCATTGGAATCTGAAAAGGTCTC
ACGTGAACAATTAATCAAACAAAAGGATCAACTCAATAGTTTATTGGCATCATTAGAGTC
CGAAGGTGCTGAACGTGAAAAGAGACTTCGTGAATTGGAAGCCAAACTCGATGAAACCTT
AAAGAACTTGGAATTAGAGAAATTGGCTCGTATGGAACTCGAAGCAAGATTAGCCAAGAC
CGAAAAGGATAGAGCTATCTTGGAATTGAAATTAGCTGAAGCCATCGATGAAAAATCAAA
ACTCGAACAACAAATCGAAGCCACCAGAATCAGAGGTGCTGCTGAAGCTCAAGGTCTTGG
TCTCTTAAGAAAGAACCTCGACACTCACGTTCACGATTTACTCAAATGGCAAAAGTTAAC
AATGGAAAACTCTTCCTCATCCTCTATCGATGACCAAATCATCGTCGAAGTCTCTGGTCT
TCCATTTGGTGAACAAGTTAAACATTTAGCCACAAAATTAGAAGCAGAAAATTTAGCAAT
TATGAAACTTTTAAATCAAAAAGAAGANATTTAAAAGCTCAAAAATTAAAATCATCAAAA
TCAAAAAAATAAATTAAAAAAATA