SFH310
Library SF
(Link to library)
Clone ID SFH310
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SFH310P
(Link to Original site)
Representative DNA sequence
>SFH310 (SFH310Q) /CSM/SF/SFH3-A/SFH310Q.Seq.d/
GTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATC
AACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAA
AGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAA
TGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAA
TGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAAT
TAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAG
AGAAAGGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAG
AACAATATGAACTTTTATTAGATCAACTCTATGATGAACAACAACAACAACXXXXXXXXX
XAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCAT
AAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCC
ATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAA
GCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAA
AATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAAT
AAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAA
GTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTT
CAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTG
AGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAA
GAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAAT
CAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAA
GAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTTC
TTTTTAAAAAACTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
FHIITKTFNLIAGGKFNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSM
KSEDLKNLDDEVIRNTLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQE
KGANQQELINYELNLQEDQEQYELLLDQLYDEQQQQ---

---AEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDE
YEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQ
QQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNN
KQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnh
sfflkn


Translated Amino Acid sequence (All Frames)
Frame A:
vsi*lqrlli*llvvnltlinntlinptvqfhhkimkklkrdykvlinnyknnhlqsinq
*nlki*ki*mmk*fvillrkckfnvkikilvnkikkiknn*liykienlvytkinkilnk
rkepinkn*simn*iykkiknnmnfy*insmmnnnnn---

---rlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkism
smklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkd
nnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlki
inkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*ikkkinny*nknkiknnli
ilsf*kt

Frame B:
fpynykdf*fdcww*i*l*stih**ilrfnsitr**rn*keitkcsstitrtitcnlsin
ei*rskkfr**sns*ys*gnanst*ksrywstksrr*rtin*ftk*rtwfiqkstrs*tr
ersqstrinql*ieftrrsrti*tfirstl**tttt---

---g*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*
v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrt
ttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c*ksst*igc*ig*k*
*tresr*efssrettis*pn*ksikkyst*ttnprttr*iksrkkstiirtrtkskii*s
fflfkkl

Frame C:
FHIITKTFNLIAGGKFNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSM
KSEDLKNLDDEVIRNTLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQE
KGANQQELINYELNLQEDQEQYELLLDQLYDEQQQQ---

---AEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDE
YEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQ
QQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNN
KQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnh
sfflkn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFH310 (SFH310Q) /CSM/SF/SFH3-A/SFH310Q.Seq.d/ 1550 0.0
SFJ324 (SFJ324Q) /CSM/SF/SFJ3-A/SFJ324Q.Seq.d/ 926 0.0
CHC215 (CHC215Q) /CSM/CH/CHC2-A/CHC215Q.Seq.d/ 926 0.0
CFH714 (CFH714Q) /CSM/CF/CFH7-A/CFH714Q.Seq.d/ 926 0.0
CFG751 (CFG751Q) /CSM/CF/CFG7-C/CFG751Q.Seq.d/ 926 0.0
CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/ 926 0.0
AFG142 (AFG142Q) /CSM/AF/AFG1-B/AFG142Q.Seq.d/ 926 0.0
CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/ 924 0.0
CFG652 (CFG652Q) /CSM/CF/CFG6-C/CFG652Q.Seq.d/ 922 0.0
AFK694 (AFK694Q) /CSM/AF/AFK6-D/AFK694Q.Seq.d/ 918 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene,complete cds. 926 0.0 4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 1e-32 16
AC115576|AC115576.1 Dictyostelium discoideum chromosome 2 map 5868742-5900083 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 127 4e-27 7
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 34 1e-12 19
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 2e-12 19
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 38 6e-12 28
AC115682|AC115682.2 Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence. 36 7e-12 16
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 32 9e-11 18
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 36 9e-11 17
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 2e-10 14
dna update 2003.12.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 259 2e-67
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara... 47 0.001
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028... 46 0.002
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes... 46 0.003
BT036468_1(BT036468|pid:none) Zea mays full-length cDNA clone ZM... 45 0.004
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik... 44 0.006
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes... 45 0.007
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co... 45 0.007
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat... 44 0.008
BC149000_1(BC149000|pid:none) Bos taurus involucrin, mRNA (cDNA ... 44 0.008
protein update 2009. 5.25
PSORT

psg: 0.85 gvh: 0.33 alm: 0.54 top: 0.37 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 1.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
40.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: endoplasmic reticulum

>> prediction for SFH310 is nuc

5' end seq. ID SFH310F
5' end seq.
>SFH310F.Seq
GTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATC
AACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAA
AGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAA
TGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAA
TGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAAT
TAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAG
AGAAAGGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAG
AACAATATGAACTTTTATTAGATCAACTCTATGATGAACAACAACAACAAC---------
-
Length of 5' end seq. 471
3' end seq. ID SFH310Z
3' end seq.
>SFH310Z.Seq
----------AGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTA
AACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAA
CAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGAT
GAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCT
AAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAA
TTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGA
CAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATC
AAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCT
GTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAAT
AATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAA
ATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAA
TTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAAT
CATTCTTTCTTTTTAAAAAACTA
Length of 3' end seq. 733
Connected seq. ID SFH310P
Connected seq.
>SFH310P.Seq
GTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATC
AACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAA
AGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAA
TGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAA
TGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAAT
TAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAG
AGAAAGGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAG
AACAATATGAACTTTTATTAGATCAACTCTATGATGAACAACAACAACAAC---------
-AGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCAT
AAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCC
ATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAA
GCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAA
AATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAAT
AAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAA
GTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTT
CAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTG
AGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAA
GAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAAT
CAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAA
GAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTTC
TTTTTAAAAAACTA
Length of connected seq. 1204
Full length Seq ID -
Full length Seq. -
Length of full length seq. -