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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFH236
Library SF
(Link to library)
Clone ID SFH236
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16349-1
Original site URL
Representative seq. ID SFH236P
(Link to Original site)
Representative DNA sequence 
>SFH236 (SFH236Q) /CSM/SF/SFH2-B/SFH236Q.Seq.d/
AACTTTTAATAATCGTGTTTTTGTGTACGGGCGTCTTGGGTACTAACTTGACCTCCAAAG
AAAAACACTAAGACCAAATCCTTTGGCTGATCATTTTGACTTTTTAATTGTCATTTGTTA
AAACTCGTTGAAGGTATATTTAAATAATAAAAACACACACTCACACACCCAAACATACAA
GCAATATAATATATATATAGAAAAAAATGAAAGTAATATCAGGCTTATTATTTTTCATTT
TAATTAGTTGTTCTTTATTTTTAGTTCAAGGACAAGTTGATTGTGTCACAAATTCAAGTG
ATGCTAGTTGTACCAATTTTCAATATCCATTGGCAAATATAACAGCAGATATCAATAATT
TATGTGGTAGCATGCCTTATATGCCAGTTTGTACCATTCAACAATCATGTAATCAAGAAT
CCTCAACAAGTGGTATTTGTGATCCATTCTCAATTCTTGGTGATAGTTGTCTTCACGATA
TGCCAGGCATGAGTGGTTGXXXXXXXXXXGCATCAGGTTCAGTTGTTGAACAATGTTCAT
CAGTCGATTCAATTAGTAATTTACCAACCACAATGCAATTATTCGCTGGTATTAAAAGTA
TTTGCACAGAGATGGCAATGGATGGTTGTGAGAAATGTTCAGGAAATTCACCAACTACCA
CCTGTGATGTTTTGCCAGTTTACTCCTCCCTTTGTATGGCTATGCCTGATATGTCACAAT
GTGCCAATTGGACCAAGATGTGTTCCTCCTCTGGTCAACTCTACAACTCTCAAATCACAT
CAGACTATTGTGTCGCCTCTGTTGCTGACGCCGTTCCAATCATGAGAATGTACTTTCACA
CTGGTATCTTGGACTATATCCTCTTTAAATCTTGGGTACCAAGAACTGACCGTCAATTTG
CTGGTTCATGGTTTGCCATCTTTTTCTTTGCTATCTTTTTTGAACTCGAAAAAACCCTTA
GAAGTATTTTAGAAAAAAGATGGACTCCAAACAAAAAAGATTCAGAAGATAATAATTTAA
TTAATTCATCTTTCTTAAGTGGTTCTTATCCAAAATTCTCTTATAGAGATATAATTAGAG
GATGTTTACATGCTATCGAACTAACATGTAGTTATGCTTTAATGCTTGTTGCAATGACAT
TTAATGTTGCACTCTTTTTTGCAGTAATTGCAGGAGTTTTAGTTGGTAATATTCTCTTTG
GTAGATATCGTAACTATACTCCAAGAGTTACTTGTTGCGAGGAACTTCCGAAGATCTNAC
ACCTTAAAGAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lliivflctgvlgtnltskekh*dqilwliiltf*lsfvktr*ryi*iikththtpkhts
niiyi*KKMKVISGLLFFILISCSLFLVQGQVDCVTNSSDASCTNFQYPLANITADINNL
CGSMPYMPVCTIQQSCNQESSTSGICDPFSILGDSCLHDMPGMSG---

---ASGSVVEQCSSVDSISNLPTTMQLFAGIKSICTEMAMDGCEKCSGNSPTTTCDVLPV
YSSLCMAMPDMSQCANWTKMCSSSGQLYNSQITSDYCVASVADAVPIMRMYFHTGILDYI
LFKSWVPRTDRQFAGSWFAIFFFAIFFELEKTLRSILEKRWTPNKKDSEDNNLINSSFLS
GSYPKFSYRDIIRGCLHAIELTCSYALMLVAMTFNVALFFAVIAGVLVGNILFGRYRNYT
PRVTCCEELPKIXHLKE
Translated Amino Acid sequence (All Frames) 
Frame A:
nf**scfcvraswvlt*ppkkntktksfg*sf*lfnchllklvegifk**khtlthpniq
ai*yiyrkk*k*yqayyfsf*lvvlyf*fkdklivsqiqvmlvvpifnihwqi*qqisii
yvvaclicqfvpfnnhviknpqqvvfvihsqflvivvfticqa*vv---

---ASGSVVEQCSSVDSISNLPTTMQLFAGIKSICTEMAMDGCEKCSGNSPTTTCDVLPV
YSSLCMAMPDMSQCANWTKMCSSSGQLYNSQITSDYCVASVADAVPIMRMYFHTGILDYI
LFKSWVPRTDRQFAGSWFAIFFFAIFFELEKTLRSILEKRWTPNKKDSEDNNLINSSFLS
GSYPKFSYRDIIRGCLHAIELTCSYALMLVAMTFNVALFFAVIAGVLVGNILFGRYRNYT
PRVTCCEELPKIXHLKE

Frame B:
tfnnrvfvygrlgy*ldlqrktlrpnpladhfdflivic*nslkvylnnknthshtqtyk
qyniyieknesnirliifhfn*lffifssrts*lchkfk*c*lyqfsisigkynsryq*f
mw*halyaslyhstim*srilnkwyl*silnsw**lssryarhewl---

---hqvqllnnvhqsiqlviyqpqcnyslvlkvfaqrwqwmvvrnvqeihqlppvmfcqf
tppfvwlclichnvpigprcvpplvnsttlkshqtivspllltpfqs*ectftlvswtis
slnlgyqeltvnllvhglpsfsllsflnskkplevf*kkdglqtkkiqkiii*lihls*v
vliqnsliei*ledvymlsn*hvvml*cllq*hlmlhsflq*lqef*lvifslvdivtil
qellvarnfrrsxtlkk

Frame C:
lliivflctgvlgtnltskekh*dqilwliiltf*lsfvktr*ryi*iikththtpkhts
niiyi*KKMKVISGLLFFILISCSLFLVQGQVDCVTNSSDASCTNFQYPLANITADINNL
CGSMPYMPVCTIQQSCNQESSTSGICDPFSILGDSCLHDMPGMSG---

---irfsc*tmfisrfn**ftnhnaiirwy*kylhrdgngwl*emfrkftnyhl*cfasl
llplygya*yvtmcqldqdvfllwstlqlsnhirllcrlcc*rrsnhenvlshwylglyp
l*ilgtkn*psicwfmvchlflcylf*trknp*kyfrkkmdskqkrfrr**fn*fiflkw
flskill*ryn*rmftcyrtnm*lcfnaccndi*cctlfcsncrsfsw*yslw*is*lys
ksyllrgtsedltp*rn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH236 (SFH236Q) /CSM/SF/SFH2-B/SFH236Q.Seq.d/                       2416   0.0
VFD235 (VFD235Q) /CSM/VF/VFD2-B/VFD235Q.Seq.d/                       1501   0.0
VFJ390 (VFJ390Q) /CSM/VF/VFJ3-D/VFJ390Q.Seq.d/                       1453   0.0
VFF667 (VFF667Q) /CSM/VF/VFF6-C/VFF667Q.Seq.d/                       1445   0.0
SFF864 (SFF864Q) /CSM/SF/SFF8-C/SFF864Q.Seq.d/                       1443   0.0
SFG467 (SFG467Q) /CSM/SF/SFG4-C/SFG467Q.Seq.d/                       1441   0.0
SFA746 (SFA746Q) /CSM/SF/SFA7-B/SFA746Q.Seq.d/                       1435   0.0
AFO353 (AFO353Q) /CSM/AF/AFO3-C/AFO353Q.Seq.d/                       1433   0.0
VFC744 (VFC744Q) /CSM/VF/VFC7-B/VFC744Q.Seq.d/                       1407   0.0
AFL623 (AFL623Q) /CSM/AF/AFL6-A/AFL623Q.Seq.d/                       1370   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ315489|AJ315489.1 Dictyostelium discoideum mRNA for p80 protein.  1451   0.0    4
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.   280   5e-71  1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   6e-08  23
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    36   1e-06  12
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    34   2e-06  20
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    38   2e-06  13
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    46   3e-06  21
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence.    36   9e-06  13
AL034559|AL034559.4 Plasmodium falciparum MAL3P7.                  36   7e-05  14
AE014840|AE014840.1 Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence.    38   7e-05  13
dna update 2003.12.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7YXD4) RecName: Full=Protein P80; AltName: Full=Endosomal memb...   588   e-166
DQ646486_1(DQ646486|pid:none) Chlamydomonas reinhardtii transmem...   152   3e-35
Z68217_7(Z68217|pid:none) Caenorhabditis elegans Cosmid F58G6, c...    60   2e-07
DQ443363_1(DQ443363|pid:none) Bombyx mori copper transporter mRN...    57   1e-06
AM910994_672(AM910994|pid:none) Plasmodium knowlesi strain H chr...    54   1e-05
T32929(T32929)hypothetical protein K12C11.3 - Caenorhabditis ele...    53   3e-05
DQ459355_1(DQ459355|pid:none) Drosophila melanogaster Ctr1B (Ctr...    53   3e-05
CP000584_382(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...    52   4e-05
AJ705045_1(AJ705045|pid:none) Pleurotus sp. 'Florida' ctr1 gene ...    49   5e-04
AF043701_5(AF043701|pid:none) Caenorhabditis elegans cosmid K12C...    47   0.001
protein update 2009. 5.25
PSORT 

 psg: 0.99  gvh: 0.85  alm: 0.20  top: 0.13  tms: 0.20  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SFH236 is end
5' end seq. ID SFH236F
5' end seq. 
>SFH236F.Seq
AACTTTTAATAATCGTGTTTTTGTGTACGGGCGTCTTGGGTACTAACTTGACCTCCAAAG
AAAAACACTAAGACCAAATCCTTTGGCTGATCATTTTGACTTTTTAATTGTCATTTGTTA
AAACTCGTTGAAGGTATATTTAAATAATAAAAACACACACTCACACACCCAAACATACAA
GCAATATAATATATATATAGAAAAAAATGAAAGTAATATCAGGCTTATTATTTTTCATTT
TAATTAGTTGTTCTTTATTTTTAGTTCAAGGACAAGTTGATTGTGTCACAAATTCAAGTG
ATGCTAGTTGTACCAATTTTCAATATCCATTGGCAAATATAACAGCAGATATCAATAATT
TATGTGGTAGCATGCCTTATATGCCAGTTTGTACCATTCAACAATCATGTAATCAAGAAT
CCTCAACAAGTGGTATTTGTGATCCATTCTCAATTCTTGGTGATAGTTGTCTTCACGATA
TGCCAGGCATGAGTGGTTG----------
Length of 5' end seq. 499
3' end seq. ID SFH236Z
3' end seq. 
>SFH236Z.Seq
----------GCATCAGGTTCAGTTGTTGAACAATGTTCATCAGTCGATTCAATTAGTAA
TTTACCAACCACAATGCAATTATTCGCTGGTATTAAAAGTATTTGCACAGAGATGGCAAT
GGATGGTTGTGAGAAATGTTCAGGAAATTCACCAACTACCACCTGTGATGTTTTGCCAGT
TTACTCCTCCCTTTGTATGGCTATGCCTGATATGTCACAATGTGCCAATTGGACCAAGAT
GTGTTCCTCCTCTGGTCAACTCTACAACTCTCAAATCACATCAGACTATTGTGTCGCCTC
TGTTGCTGACGCCGTTCCAATCATGAGAATGTACTTTCACACTGGTATCTTGGACTATAT
CCTCTTTAAATCTTGGGTACCAAGAACTGACCGTCAATTTGCTGGTTCATGGTTTGCCAT
CTTTTTCTTTGCTATCTTTTTTGAACTCGAAAAAACCCTTAGAAGTATTTTAGAAAAAAG
ATGGACTCCAAACAAAAAAGATTCAGAAGATAATAATTTAATTAATTCATCTTTCTTAAG
TGGTTCTTATCCAAAATTCTCTTATAGAGATATAATTAGAGGATGTTTACATGCTATCGA
ACTAACATGTAGTTATGCTTTAATGCTTGTTGCAATGACATTTAATGTTGCACTCTTTTT
TGCAGTAATTGCAGGAGTTTTAGTTGGTAATATTCTCTTTGGTAGATATCGTAACTATAC
TCCAAGAGTTACTTGTTGCGAGGAACTTCCGAAGATCTNACACCTTAAAGAAAT
Length of 3' end seq. 764
Connected seq. ID SFH236P
Connected seq. 
>SFH236P.Seq
AACTTTTAATAATCGTGTTTTTGTGTACGGGCGTCTTGGGTACTAACTTGACCTCCAAAG
AAAAACACTAAGACCAAATCCTTTGGCTGATCATTTTGACTTTTTAATTGTCATTTGTTA
AAACTCGTTGAAGGTATATTTAAATAATAAAAACACACACTCACACACCCAAACATACAA
GCAATATAATATATATATAGAAAAAAATGAAAGTAATATCAGGCTTATTATTTTTCATTT
TAATTAGTTGTTCTTTATTTTTAGTTCAAGGACAAGTTGATTGTGTCACAAATTCAAGTG
ATGCTAGTTGTACCAATTTTCAATATCCATTGGCAAATATAACAGCAGATATCAATAATT
TATGTGGTAGCATGCCTTATATGCCAGTTTGTACCATTCAACAATCATGTAATCAAGAAT
CCTCAACAAGTGGTATTTGTGATCCATTCTCAATTCTTGGTGATAGTTGTCTTCACGATA
TGCCAGGCATGAGTGGTTG----------GCATCAGGTTCAGTTGTTGAACAATGTTCAT
CAGTCGATTCAATTAGTAATTTACCAACCACAATGCAATTATTCGCTGGTATTAAAAGTA
TTTGCACAGAGATGGCAATGGATGGTTGTGAGAAATGTTCAGGAAATTCACCAACTACCA
CCTGTGATGTTTTGCCAGTTTACTCCTCCCTTTGTATGGCTATGCCTGATATGTCACAAT
GTGCCAATTGGACCAAGATGTGTTCCTCCTCTGGTCAACTCTACAACTCTCAAATCACAT
CAGACTATTGTGTCGCCTCTGTTGCTGACGCCGTTCCAATCATGAGAATGTACTTTCACA
CTGGTATCTTGGACTATATCCTCTTTAAATCTTGGGTACCAAGAACTGACCGTCAATTTG
CTGGTTCATGGTTTGCCATCTTTTTCTTTGCTATCTTTTTTGAACTCGAAAAAACCCTTA
GAAGTATTTTAGAAAAAAGATGGACTCCAAACAAAAAAGATTCAGAAGATAATAATTTAA
TTAATTCATCTTTCTTAAGTGGTTCTTATCCAAAATTCTCTTATAGAGATATAATTAGAG
GATGTTTACATGCTATCGAACTAACATGTAGTTATGCTTTAATGCTTGTTGCAATGACAT
TTAATGTTGCACTCTTTTTTGCAGTAATTGCAGGAGTTTTAGTTGGTAATATTCTCTTTG
GTAGATATCGTAACTATACTCCAAGAGTTACTTGTTGCGAGGAACTTCCGAAGATCTNAC
ACCTTAAAGAAAT
Length of connected seq. 1263
Full length Seq ID -
Full length Seq. -
Length of full length seq. -