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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFH229
Library SF
(Link to library)
Clone ID SFH229
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15354-1
Original site URL
Representative seq. ID SFH229Z
(Link to Original site)
Representative DNA sequence 
>SFH229 (SFH229Q) /CSM/SF/SFH2-B/SFH229Q.Seq.d/
XXXXXXXXXXAGGTTTTAATTTCAAAGTACTTCATCAAGGTGTTTCCTCTGAAATGATTG
CAGAGAAATATAATTTAACAAGAGATGAAATCGATAAATTCTCTGGTAGATCTCACGAAT
TAGCAGATAACGCAACAAAGAAAGGCTATTTCAAAGACCAAATCATCCCAGTCACCCTTC
AAGATGGTAAAGTTGTTGATAAAGATGAAGGTATTCGTGTTCCAGTAGATTATAAGAAAA
TGTCAACTTTAAAAACCCCATTCAAGCCAAATGGTAAGATTAGTGCTGCAAATGCTTCAC
AAATCAGCGATGGTGCTTCTGCTGTCCTATTGGTTAGTGGTCGTTTAGTTAAGAAATTAG
GATTAAAACCACGTGCTCGTATTGTAACTTGTACAGTAGTTGGCTCTGATCCAGAATATA
TGCTATTAGGTCCAATTCCAGCAACTATTAAAGCATTGGAAAAGAGTGGTCTCACTAAAG
ATCAAATTGATCTATATGAAATTAATGAAGCCTTTGCATCTGTAGTTTTAGGTTGGAAAA
AGGAATTAAATATTGATTTAGATAAAATTAATCCAAATGGTGGTGCAATCGCACATGGTC
ATCCATTAGGTGCAACTGGTTGTATTCTTATGACTAAAATGGTAAATGAATTAGAAAGAT
CAAATAAAAAATACGCACTTCAAACAATGTGTATTGGTTTTGGTCAAGCACACTGCAACA
ATTATTGAAAATTGTTCATATAAACCAATTTCAAAATTATAAAAAAATAATAAAAAACTT
T
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---GFNFKVLHQGVSSEMIAEKYNLTRDEIDKFSGRSHELADNATKKGYFKDQIIPVTLQ
DGKVVDKDEGIRVPVDYKKMSTLKTPFKPNGKISAANASQISDGASAVLLVSGRLVKKLG
LKPRARIVTCTVVGSDPEYMLLGPIPATIKALEKSGLTKDQIDLYEINEAFASVVLGWKK
ELNIDLDKINPNGGAIAHGHPLGATGCILMTKMVNELERSNKKYALQTMCIGFGQAHCNN
Y*klfi*tnfkiikk**kt
Translated Amino Acid sequence (All Frames) 
Frame A:
---GFNFKVLHQGVSSEMIAEKYNLTRDEIDKFSGRSHELADNATKKGYFKDQIIPVTLQ
DGKVVDKDEGIRVPVDYKKMSTLKTPFKPNGKISAANASQISDGASAVLLVSGRLVKKLG
LKPRARIVTCTVVGSDPEYMLLGPIPATIKALEKSGLTKDQIDLYEINEAFASVVLGWKK
ELNIDLDKINPNGGAIAHGHPLGATGCILMTKMVNELERSNKKYALQTMCIGFGQAHCNN
Y*klfi*tnfkiikk**kt


Frame B:
---vliskyfikvfplk*lqrnii*qemksinslvdltn*qitqqrkaisktkssqspfk
mvkllikmkvfvfq*iirkcql*kphssqmvrlvlqmlhksamvlllsywlvvv*lrn*d
*nhvlvl*lvq*laliqnicy*vqfqqllkhwkrvvslkikliymklmkplhl*f*vgkr
n*ili*ikliqmvvqshmvih*vqlvvfl*lkw*mn*kdqiknthfkqcvlvlvkhtati
iencsykpiskl*knnkkl


Frame C:
---f*fqstssrcfl*ndcrei*fnkr*nr*ilw*isrisr*rnkerlfqrpnhpshpsr
w*sc**r*ryscssrl*envnfknpiqakw*d*cckcftnqrwcfccpig*wsfs*eiri
kttcsycnlysswl*sriyairsnssny*sigkewsh*rsn*si*n**slcicsfrlekg
iky*fr*n*skwwcnrtwssircnwlysyd*ngk*irkik*kirtsnnvywfwsstlqql
lkivhinqfqnykkiiknf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH229 (SFH229Q) /CSM/SF/SFH2-B/SFH229Q.Seq.d/                       1471   0.0
SFD167 (SFD167Q) /CSM/SF/SFD1-C/SFD167Q.Seq.d/                       1449   0.0
VFG265 (VFG265Q) /CSM/VF/VFG2-C/VFG265Q.Seq.d/                       1378   0.0
CFI367 (CFI367Q) /CSM/CF/CFI3-C/CFI367Q.Seq.d/                       1291   0.0
AFL282 (AFL282Q) /CSM/AF/AFL2-D/AFL282Q.Seq.d/                       1271   0.0
VFO257 (VFO257Q) /CSM/VF/VFO2-C/VFO257Q.Seq.d/                       1265   0.0
AFN284 (AFN284Q) /CSM/AF/AFN2-D/AFN284Q.Seq.d/                       1247   0.0
VFN804 (VFN804Q) /CSM/VF/VFN8-A/VFN804Q.Seq.d/                       1183   0.0
CFA532 (CFA532Q) /CSM/CF/CFA5-B/CFA532Q.Seq.d/                       1124   0.0
VFL750 (VFL750Q) /CSM/VF/VFL7-C/VFL750Q.Seq.d/                       1070   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BJ172173|BJ172173.1 Physcomitrella patens subsp. patens cDNA clone:pph31g22, 3' end,single read.  1013   0.0    1
AW395348|AW395348.1 sh46h12.y1 Gm-c1017 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1017-4800 5' similar to TR:Q43637 Q43637 ACETOACETYL-COENZYME A THIOLASE ;, mRNA sequence.    54   2e-06  2
CF806118|CF806118.1 psHB003xP21f USDA-IFAFS:Expression of Phytophthora sojae genes during infection and propagation Phytophthora sojae cDNA clone sHB003P21 5, mRNA sequence.    54   3e-06  2
AB026669|AB026669.1 Acinetobacter sp. NCIMB9871 cyclohexanol metabolic gene cluster (orf18, orf17, orf16, orf15, orf14, orf13, orf12, chnB), partial and complete cds.    46   3e-05  2
AR321204|AR321204.1 Sequence 3754 from patent US 6562958.          42   2e-04  3
CD403536|CD403536.1 Gm_ck26301 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence.    54   0.003  1
BG727021|BG727021.1 sae30b10.y1 Gm-c1067 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1067-4292 5' similar to TR:Q9XHH0 Q9XHH0 ACETOACETYL COA THIOLASE ;, mRNA sequence.    54   0.003  1
BM092818|BM092818.1 sah19c09.y3 Gm-c1086 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1086-1674 5' similar to TR:Q43637 Q43637 ACETOACETYL-COENZYME A THIOLASE ;, mRNA sequence.    54   0.003  1
BI426611|BI426611.1 sag05d03.y1 Gm-c1080 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1080-173 5' similar to TR:Q9XHH0 Q9XHH0 ACETOACETYL COA THIOLASE ;, mRNA sequence.    54   0.003  1
BG042100|BG042100.1 sv14d06.y1 Gm-c1056 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1056-1716 5' similar to TR:Q9XHH0 Q9XHH0 ACETOACETYL COA THIOLASE ;, mRNA sequence.    54   0.003  1
dna update 2003.12.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000922_1494(CP000922|pid:none) Anoxybacillus flavithermus WK1,...   243   6e-63
CP000875_4368(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...   238   1e-61
BA000043_1320(BA000043|pid:none) Geobacillus kaustophilus HTA426...   237   3e-61
AE017221_330(AE017221|pid:none) Thermus thermophilus HB27, compl...   236   6e-61
BA000043_2777(BA000043|pid:none) Geobacillus kaustophilus HTA426...   235   1e-60
BA000028_2672(BA000028|pid:none) Oceanobacillus iheyensis HTE831...   225   1e-57
CP000820_3585(CP000820|pid:none) Frankia sp. EAN1pec, complete g...   223   7e-57
CU458896_595(CU458896|pid:none) Mycobacterium abscessus chromoso...   216   6e-55
AM260479_1836(AM260479|pid:none) Ralstonia eutropha H16 chromoso...   216   8e-55
CP000384_4063(CP000384|pid:none) Mycobacterium sp. MCS, complete...   215   1e-54
protein update 2009. 5.25
PSORT 

 psg: 0.79  gvh: 0.44  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SFH229 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFH229Z
3' end seq. 
>SFH229Z.Seq
----------AGGTTTTAATTTCAAAGTACTTCATCAAGGTGTTTCCTCTGAAATGATTG
CAGAGAAATATAATTTAACAAGAGATGAAATCGATAAATTCTCTGGTAGATCTCACGAAT
TAGCAGATAACGCAACAAAGAAAGGCTATTTCAAAGACCAAATCATCCCAGTCACCCTTC
AAGATGGTAAAGTTGTTGATAAAGATGAAGGTATTCGTGTTCCAGTAGATTATAAGAAAA
TGTCAACTTTAAAAACCCCATTCAAGCCAAATGGTAAGATTAGTGCTGCAAATGCTTCAC
AAATCAGCGATGGTGCTTCTGCTGTCCTATTGGTTAGTGGTCGTTTAGTTAAGAAATTAG
GATTAAAACCACGTGCTCGTATTGTAACTTGTACAGTAGTTGGCTCTGATCCAGAATATA
TGCTATTAGGTCCAATTCCAGCAACTATTAAAGCATTGGAAAAGAGTGGTCTCACTAAAG
ATCAAATTGATCTATATGAAATTAATGAAGCCTTTGCATCTGTAGTTTTAGGTTGGAAAA
AGGAATTAAATATTGATTTAGATAAAATTAATCCAAATGGTGGTGCAATCGCACATGGTC
ATCCATTAGGTGCAACTGGTTGTATTCTTATGACTAAAATGGTAAATGAATTAGAAAGAT
CAAATAAAAAATACGCACTTCAAACAATGTGTATTGGTTTTGGTCAAGCACACTGCAACA
ATTATTGAAAATTGTTCATATAAACCAATTTCAAAATTATAAAAAAATAATAAAAAACTT
T
Length of 3' end seq. 771
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -