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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFH226
Library SF
(Link to library)
Clone ID SFH226
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11649-1|Contig-U16366-1
Original site URL
Representative seq. ID SFH226P
(Link to Original site)
Representative DNA sequence 
>SFH226 (SFH226Q) /CSM/SF/SFH2-B/SFH226Q.Seq.d/
TAAACCAGNATTGTACAGAAGATGAATTAAAGAAAGCATATAGAAAGATGGCTGTTAAAT
ACCATCCAGATAAAAATCAAGGACCAGGTAAAGATGCAGCCGAAGCAAAATTTAAAGATA
TTAGTGAAGCATATGAAGTTTTAAGTGATCCAGAGAAGAGAAAGATGTACGATAGTTATG
GTTCTGAAGGTATGAAGGAGAGTGGTTTCCATGCATCATCAGCTGAAGACCTCTTCTCAC
ATTTCTTTGGTGCAGGAGGTGGCGGTGGTGGATTTAGTTTCGGAGGTGGTGGTGGTGATG
ATTTTGGTTGGATTTAGTTTTGGTAATATGGGAGGTATGGGCGGCATGGGTGGCATGGGT
GGTGGTCACAAGAAGAGAAGAAAGGGTGAAGATATTGAACATGAAATGAATAGAAGTTNG
GAAGAATTATATAATGGAAAATTAGNTAAGATTTCAATTAGTANAGATGAAGTATGTAAA
ACCTGNNAAGGTAGNGGNAGNNATAAACCTGGNGTNACCACANCTTGNCCAACATGTNAT
GGNNGNNNATACNNNNNNCAAAAGAAACANGNGNNNNCAGGNNTGATNCANCANGNTNAA
ACAGNNTGNNNCACATGNNATGGNNCTGNNNANNNGAXXXXXXXXXXANGGNCNTCNAAA
ACNACNACNACAAGGNTTTAANCCNGCNGANTTTGGGGCCCNANTTGGNGGNGGGGGGCC
CCAACAAGCCCAACAGNGNCNACAACNATNAACNATTTAAAAAAAAAAAAACTAAAAATA
TCCAAAAATATCAAAATACCCAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
*txivqkmn*rkhierwllntiqikikdqvkmqpkqnlkilvkhmkf*viqrrerctivm
vlkv*RRVVSMHHQLKTSSHISLVQEVAVVDLVSEVVVVMILVGFSFGNMGGMGGMGGMG
GGHKKRRKGEDIEHEMNRSXEELYNGKLXKISISXDEVCKTXXGXGXXKPGVTTXXPTCX
GXXYXXQKKXXXXGXXXXXXTXXXTXXGXXXX---

---XXXXNXXXKXLXXXXLGPXLXXGGPNKPNXXXNXXXFKKKKTKNIQKYQNTQK
Translated Amino Acid sequence (All Frames) 
Frame A:
*txivqkmn*rkhierwllntiqikikdqvkmqpkqnlkilvkhmkf*viqrrerctivm
vlkv*RRVVSMHHQLKTSSHISLVQEVAVVDLVSEVVVVMILVGFSFGNMGGMGGMGGMG
GGHKKRRKGEDIEHEMNRSXEELYNGKLXKISISXDEVCKTXXGXGXXKPGVTTXXPTCX
GXXYXXQKKXXXXGXXXXXXTXXXTXXGXXXX---

---XXXXNXXXKXLXXXXLGPXLXXGGPNKPNXXXNXXXFKKKKTKNIQKYQNTQK

Frame B:
kpxlyrr*ikesi*kdgc*ipsr*ksrtr*rcsrski*ry**si*sfk*sreekdvr*lw
f*ryegewfpciis*rplltflwcrrwrwwi*frrwww**fwldlvlviwevwaawvawv
vvtrreervkilnmk*ievxknyimen*xrfqlvxmkyvkpxkvxxxinlxxpxlxqhvm
xxxtxxkrnxxxqx*xxxxkqxxxhxmxlxxx---

---xxskttttrx*xxxxwgpxwxxgaptsptxxttxnxlkkkklkisknikipk

Frame C:
nqxctedelkkayrkmavkyhpdknqgpgkdaaeakfkdiseayevlsdpekrkmydsyg
segmkesgfhassaedlfshffgaggggggfsfgggggddfgwi*fw*ygrygrhgwhgw
wsqeekkg*ry*t*ne*kxgrii*wkix*dfn*xr*sm*nlxr*xxx*twxxhxlxnmxw
xxixxxketxxxrxdxxxxnxxxhmxwxxxx---

---gxxkxxxqgfxpaxfgaxxggggpqqaqqxxqxxti*kkkn*kypkiskypk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH226 (SFH226Q) /CSM/SF/SFH2-B/SFH226Q.Seq.d/                        985   0.0
CFG209 (CFG209Q) /CSM/CF/CFG2-A/CFG209Q.Seq.d/                        757   0.0
CFG324 (CFG324Q) /CSM/CF/CFG3-A/CFG324Q.Seq.d/                        733   0.0
CHB294 (CHB294Q) /CSM/CH/CHB2-D/CHB294Q.Seq.d/                        686   0.0
CFC796 (CFC796Q) /CSM/CF/CFC7-D/CFC796Q.Seq.d/                        674   0.0
CFJ662 (CFJ662Q) /CSM/CF/CFJ6-C/CFJ662Q.Seq.d/                        664   0.0
CFG155 (CFG155Q) /CSM/CF/CFG1-C/CFG155Q.Seq.d/                        662   0.0
CHC270 (CHC270Q) /CSM/CH/CHC2-C/CHC270Q.Seq.d/                        644   0.0
SFB251 (SFB251Q) /CSM/SF/SFB2-C/SFB251Q.Seq.d/                        626   e-178
SFE772 (SFE772Q) /CSM/SF/SFE7-C/SFE772Q.Seq.d/                        597   e-169
own update 2002.12. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BM309208|BM309208.1 sak55h09.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID:mRNA sequence.    58   4e-07  2
BM308902|BM308902.1 sak51h04.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-6871 5' similar to TR:O24074 O24074 DNAJ-LIKE PROTEIN. ;, mRNA sequence.    58   5e-07  2
AW705420|AW705420.1 sk48h03.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-5838 5' similar to TR:O24074 O24074 DNAJ-LIKE PROTEIN. ;, mRNA sequence.    58   5e-07  2
AW569262|AW569262.1 si64h03.y1 Gm-r1030 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-r1030-3726 5' similar to TR:O24074 O24074 DNAJ-LIKE PROTEIN. ;, mRNA sequence.    58   6e-07  2
AZ693014|AZ693014.1 ENTKF92TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36   6e-07  4
AW568830|AW568830.1 si61g08.y1 Gm-r1030 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-r1030-3447 5' similar to TR:O24074 O24074 DNAJ-LIKE PROTEIN. ;, mRNA sequence.    58   6e-07  2
CF806266|CF806266.1 psHB007xC07f USDA-IFAFS:Expression of Phytophthora sojae genes during infection and propagation Phytophthora sojae cDNA clone sHB007C07 5, mRNA sequence.    58   7e-07  2
CK245502|CK245502.1 EST729139 potato callus cDNA library, normalized and full-length Solanum tuberosum cDNA clone POCAE75 5' end, mRNA sequence.    62   1e-06  2
CK233609|CK233609.1 re16f08.y1 Meloidogyne incognita parasitic J2 J3 SL1 TOPO v1 Meloidogyne incognita cDNA 5' similar to TR:Q9VPY9 Q9VPY9 CG5001 PROTEIN. ;contains element MER22 repetitive element ;, mRNA sequence.    38   3e-06  4
BE249385|BE249385.2 NF014D02LF1F1016 Developing leaf Medicago truncatula cDNA clone NF014D02LF 5', mRNA sequence.    48   7e-06  2
dna update 2003.12.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ED3) RecName: Full=DnaJ homolog subfamily A member 1 homolog;     161   9e-66
AK240890_1(AK240890|pid:none) Oryza sativa Japonica Group cDNA, ...   100   9e-20
CP001333_283(CP001333|pid:none) Micromonas sp. RCC299 chromosome...    94   4e-18
CP000592_51(CP000592|pid:none) Ostreococcus lucimarinus CCE9901 ...    94   7e-18
BC166524_1(BC166524|pid:none) Rattus norvegicus DnaJ (Hsp40) hom...    94   7e-18
(O75953) RecName: Full=DnaJ homolog subfamily B member 5; AltNam...    93   9e-18
AL355377_7(AL355377|pid:none) Human DNA sequence from clone RP11...    93   9e-18
AL355377_6(AL355377|pid:none) Human DNA sequence from clone RP11...    93   9e-18
AK299647_1(AK299647|pid:none) Homo sapiens cDNA FLJ56830 complet...    93   9e-18
A96621(A96621) probable heat shock protein F23H11.4 [imported] -...    93   9e-18
protein update 2009. 5.25
PSORT 

 psg: 0.84  gvh: 0.65  alm: 0.60  top: 0.30  tms: 0.00  mit: 0.46  mip: 0.02
 nuc: 0.15  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: extracellular, including cell wall
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for SFH226 is exc
5' end seq. ID SFH226F
5' end seq. 
>SFH226F.Seq
TAAACCAGNATTGTACAGAAGATGAATTAAAGAAAGCATATAGAAAGATGGCTGTTAAAT
ACCATCCAGATAAAAATCAAGGACCAGGTAAAGATGCAGCCGAAGCAAAATTTAAAGATA
TTAGTGAAGCATATGAAGTTTTAAGTGATCCAGAGAAGAGAAAGATGTACGATAGTTATG
GTTCTGAAGGTATGAAGGAGAGTGGTTTCCATGCATCATCAGCTGAAGACCTCTTCTCAC
ATTTCTTTGGTGCAGGAGGTGGCGGTGGTGGATTTAGTTTCGGAGGTGGTGGTGGTGATG
ATTTTGGTTGGATTTAGTTTTGGTAATATGGGAGGTATGGGCGGCATGGGTGGCATGGGT
GGTGGTCACAAGAAGAGAAGAAAGGGTGAAGATATTGAACATGAAATGAATAGAAGTTNG
GAAGAATTATATAATGGAAAATTAGNTAAGATTTCAATTAGTANAGATGAAGTATGTAAA
ACCTGNNAAGGTAGNGGNAGNNATAAACCTGGNGTNACCACANCTTGNCCAACATGTNAT
GGNNGNNNATACNNNNNNCAAAAGAAACANGNGNNNNCAGGNNTGATNCANCANGNTNAA
ACAGNNTGNNNCACATGNNATGGNNCTGNNNANNNGA----------
Length of 5' end seq. 637
3' end seq. ID SFH226Z
3' end seq. 
>SFH226Z.Seq
----------ANGGNCNTCNAAAACNACNACNACAAGGNTTTAANCCNGCNGANTTTGGG
GCCCNANTTGGNGGNGGGGGGCCCCAACAAGCCCAACAGNGNCNACAACNATNAACNATT
TAAAAAAAAAAAAACTAAAAATATCCAAAAATATCAAAATACCCAAAAA
Length of 3' end seq. 159
Connected seq. ID SFH226P
Connected seq. 
>SFH226P.Seq
TAAACCAGNATTGTACAGAAGATGAATTAAAGAAAGCATATAGAAAGATGGCTGTTAAAT
ACCATCCAGATAAAAATCAAGGACCAGGTAAAGATGCAGCCGAAGCAAAATTTAAAGATA
TTAGTGAAGCATATGAAGTTTTAAGTGATCCAGAGAAGAGAAAGATGTACGATAGTTATG
GTTCTGAAGGTATGAAGGAGAGTGGTTTCCATGCATCATCAGCTGAAGACCTCTTCTCAC
ATTTCTTTGGTGCAGGAGGTGGCGGTGGTGGATTTAGTTTCGGAGGTGGTGGTGGTGATG
ATTTTGGTTGGATTTAGTTTTGGTAATATGGGAGGTATGGGCGGCATGGGTGGCATGGGT
GGTGGTCACAAGAAGAGAAGAAAGGGTGAAGATATTGAACATGAAATGAATAGAAGTTNG
GAAGAATTATATAATGGAAAATTAGNTAAGATTTCAATTAGTANAGATGAAGTATGTAAA
ACCTGNNAAGGTAGNGGNAGNNATAAACCTGGNGTNACCACANCTTGNCCAACATGTNAT
GGNNGNNNATACNNNNNNCAAAAGAAACANGNGNNNNCAGGNNTGATNCANCANGNTNAA
ACAGNNTGNNNCACATGNNATGGNNCTGNNNANNNGA----------ANGGNCNTCNAAA
ACNACNACNACAAGGNTTTAANCCNGCNGANTTTGGGGCCCNANTTGGNGGNGGGGGGCC
CCAACAAGCCCAACAGNGNCNACAACNATNAACNATTTAAAAAAAAAAAAACTAAAAATA
TCCAAAAATATCAAAATACCCAAAAA
Length of connected seq. 796
Full length Seq ID -
Full length Seq. -
Length of full length seq. -