SFH223
Library SF
(Link to library)
Clone ID SFH223
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16456-1
Original site URL
Representative seq. ID SFH223P
(Link to Original site)
Representative DNA sequence
>SFH223 (SFH223Q) /CSM/SF/SFH2-A/SFH223Q.Seq.d/
ACTTTTTTATTTTTAAAATTAAGGATGCATAAAATTGTTCAACAAGGTAGTAAATCATTA
ATTGAATCAAGAATTAAAAGAAAATCATTATTAAGTAAAGTTGTTACAGATGTTAGTCAA
TTGATACCATATTTTCAAAATGGACATTATGTGTCTATGGGTGGATTTGCAGGTACAGGT
TATCCAAAGGTAGTACCAATTGCATTGGCAGACCATGTGGAAAAAAATGGATTACAGGGT
AAATTAAAAATGAATTTATTTGTTGGAGCATCAGTTGGACCAGAGACAGAAGATCGTTGG
GCAATGTTGGATATGATAGATAAGAGATATCCTCACCAAAATGGACATCACATTCGTAAT
GGTATAAATAGCGGTAGAATTCGTTTTGCCGATCAACATTTATCGACATTTGCAAGTGAT
TTATTGGCTGGATATTATACATTGATAAACCACATGGATCAAAGAGAACAATGGATATAG
CAATCGTTGAAGCCACAGAAATCACCGAAGACGGTTGTATAGTACCAGGTGCATCCGTTG
GTATCACACCTGAGATCTTACAAATGGCAGATAAAATCATCATTGAGATTAACACCTCAT
TACCATCGTTCAAAGGGTTGCATGATATGGTGAAAATTGCATTACCTXXXXXXXXXXTGG
TTCAATTGCAAACGCTGTCATTGNAGGTCTTTCCAAAGGTCCATTTGACAATCTCTCAGT
TTGGACTGAAGTTATTCAAGACACTTTCTTGGACTTTTTCGATAATGGTAAATTGAAATT
CGCTTCAGCAACTTCACTTAGATTCTCCCCACCAGGTTTCAATAGATTATTCAATAATTG
GGAAAATTATAAAAGTAAAATCATCCTTAGAAATCAGGCCATTTCAAATGCAGCTGAATT
AATTTCACGTGTTGGTTGTATCGCTTTAAATACTCCATGTGAAGTTGATATCTATGGTCA
TGTCAATAGTACCAATACAATGGGTTCAAAAATGTTAAATGGTTTAGGTGGTAGTGGTGA
ATTCTTAAGAAATTCAAGAATCTCCATTGTTCACACCCCATCAACTCGTCCAACTAAAAC
TGATCCACATGGTATTAGTTGTATCGTTCCTTTCGCCTCTCATATCGATCATACAGAACA
CGACATTGATATCATTGTAACCGAGCAAGGTTTAGCTGATATTCGTGGTTTGGCACCTTA
TGAACGTGCTAAAGTTATCATTCAAAATTGTGCTCATCCAATCTATAAACCAATACTCAT
GGAATACCTTGAAACTTCTCGTCAAATTTGTTTAAAAAATCATATGGGACATGAACCACA
TCAATTAGACAAAGCATTTAAATTTTATACAAATTATCNAAAAAGGACTATAAAATNA
sequence update 2001. 6. 1
Translated Amino Acid sequence
ffifkikda*ncstr**iin*ikn*kkiiik*scyrc*sidtifskwtlcvygwicryrl
skgstncigrpcgkkwitg*ikneficwsiswtrdrrslgnvgydr*eisspkwtshs*w
yk*r*nsfcrstfidick*FIGWILYIDKPHGSKRTMDIAIVEATEITEDGCIVPGASVG
ITPEILQMADKIIIEINTSLPSFKGLHDMVKIALP---

---GSIANAVIXGLSKGPFDNLSVWTEVIQDTFLDFFDNGKLKFASATSLRFSPPGFNRL
FNNWENYKSKIILRNQAISNAAELISRVGCIALNTPCEVDIYGHVNSTNTMGSKMLNGLG
GSGEFLRNSRISIVHTPSTRPTKTDPHGISCIVPFASHIDHTEHDIDIIVTEQGLADIRG
LAPYERAKVIIQNCAHPIYKPILMEYLETSRQICLKNHMGHEPHQLDKAFKFYTNYXKRT
IKX


Translated Amino Acid sequence (All Frames)
Frame A:
tflflklrmhkivqqgsksliesrikrksllskvvtdvsqlipyfqnghyvsmggfagtg
ypkvvpialadhveknglqgklkmnlfvgasvgpetedrwamldmidkryphqnghhirn
ginsgrirfadqhlstfasdllagyytlinhmdqreqwi*qslkpqkspktvv*yqvhpl
vshlrsykwqiksslrltphyhrskgcmiw*klhy---

---wfnckrchxrsfqrsi*qslsld*sysrhflglfr*w*ieirfsnft*ilptrfq*i
iq*lgkl*k*nhp*ksghfkcs*inftcwlyrfkysm*s*ylwscq*yqyngfknvkwfr
w*w*ilkkfknlhcshpinssn*n*stwy*lyrsfrlsyrsyrtrh*yhcnrarfs*ysw
fgtl*tc*syhsklcssnl*tnthgip*nfssnlfkksygt*ttsirqsi*ilyklskkd
ykx

Frame B:
lfyf*n*gciklfnkvvnh*lnqelkenhy*vkllqmlvn*yhifkmdimclwvdlqvqv
iqr*yqlhwqtmwkkmdyrvn*k*iyllehqldqrqkivgqcwi**irdiltkmditfvm
v*iavefvlpiniyrhlqviywldiih**ttwikenngysnr*shrnhrrrlystrcirw
yht*dltngr*nhh*d*hlitivqrva*ygencit---

---GSIANAVIXGLSKGPFDNLSVWTEVIQDTFLDFFDNGKLKFASATSLRFSPPGFNRL
FNNWENYKSKIILRNQAISNAAELISRVGCIALNTPCEVDIYGHVNSTNTMGSKMLNGLG
GSGEFLRNSRISIVHTPSTRPTKTDPHGISCIVPFASHIDHTEHDIDIIVTEQGLADIRG
LAPYERAKVIIQNCAHPIYKPILMEYLETSRQICLKNHMGHEPHQLDKAFKFYTNYXKRT
IKX

Frame C:
ffifkikda*ncstr**iin*ikn*kkiiik*scyrc*sidtifskwtlcvygwicryrl
skgstncigrpcgkkwitg*ikneficwsiswtrdrrslgnvgydr*eisspkwtshs*w
yk*r*nsfcrstfidick*FIGWILYIDKPHGSKRTMDIAIVEATEITEDGCIVPGASVG
ITPEILQMADKIIIEINTSLPSFKGLHDMVKIALP---

---vqlqtlslxvfpkvhltisqfglklfktlswtfsimvn*nslqqlhldsphqvsidy
siigkiikvkssleirpfqmqln*fhvlvvsl*ilhvklismvmsivpiqwvqkc*mv*v
vvvns*eiqesplftphqlvqlklihmvlvvsflsplisiiqnttlisl*pskv*lifvv
whlmnvlklsfkivliqsinqyswntlkllvkfv*kiiwdmnhin*tkhlnfiqiixkgl
*n

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFH223 (SFH223Q) /CSM/SF/SFH2-A/SFH223Q.Seq.d/ 2587 0.0
AFD589 (AFD589Q) /CSM/AF/AFD5-D/AFD589Q.Seq.d/ 1398 0.0
AFD648 (AFD648Q) /CSM/AF/AFD6-B/AFD648Q.Seq.d/ 1392 0.0
AFO437 (AFO437Q) /CSM/AF/AFO4-B/AFO437Q.Seq.d/ 1390 0.0
CFJ115 (CFJ115Q) /CSM/CF/CFJ1-A/CFJ115Q.Seq.d/ 1382 0.0
SFK723 (SFK723Q) /CSM/SF/SFK7-A/SFK723Q.Seq.d/ 1380 0.0
CFK206 (CFK206Q) /CSM/CF/CFK2-A/CFK206Q.Seq.d/ 1380 0.0
CFK122 (CFK122Q) /CSM/CF/CFK1-A/CFK122Q.Seq.d/ 1380 0.0
AFH124 (AFH124Q) /CSM/AF/AFH1-A/AFH124Q.Seq.d/ 1380 0.0
FC-AL01 (FC-AL01Q) /CSM/FC/FC-AL/FC-AL01Q.Seq.d/ 1378 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL409684|AL409684.1 T7 end of clone XAV0AA001D05 of library XAV0AA from strain CBS 379 of Saccharomyces exiguus. 62 1e-10 3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 4e-06 21
AL139189|AL139189.14 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP11-94F16. 34 4e-04 9
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 38 0.004 12
AR319568|AR319568.1 Sequence 2118 from patent US 6562958. 40 0.014 2
AC122580|AC122580.5 Rattus norvegicus clone CH230-29H2, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 42 0.019 7
AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 36 0.043 10
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5. 34 0.14 14
AC073928|AC073928.5 Homo sapiens chromosome 2 clone RP11-745P9, complete sequence. 34 0.20 8
AE017033|AE017033.1 Bacillus anthracis str. Ames section 10 of 18 of the complete genome. 32 0.23 14
dna update 2003.12.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54K91) RecName: Full=Acetyl-CoA hydrolase; EC=3.1.2.1... 446 e-123
AM920427_313(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 306 1e-81
AP007151_504(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 304 4e-81
A36316(A36316) acu-8 protein - Neurospora crassa &M31521_1(M315... 300 6e-80
CU633453_78(CU633453|pid:none) Podospora anserina genomic DNA ch... 298 4e-79
D89222_1(D89222|pid:none) Schizosaccharomyces pombe mRNA, partia... 288 2e-76
(Q9UUJ9) RecName: Full=Acetyl-CoA hydrolase; EC=3.1.2.1... 288 3e-76
AE017180_488(AE017180|pid:none) Geobacter sulfurreducens PCA, co... 284 4e-75
CP000148_1711(CP000148|pid:none) Geobacter metallireducens GS-15... 284 4e-75
CP001390_726(CP001390|pid:none) Geobacter sp. FRC-32, complete g... 284 6e-75
protein update 2009. 5.25
PSORT

psg: 0.57 gvh: 0.32 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SFH223 is cyt

5' end seq. ID SFH223F
5' end seq.
>SFH223F.Seq
ACTTTTTTATTTTTAAAATTAAGGATGCATAAAATTGTTCAACAAGGTAGTAAATCATTA
ATTGAATCAAGAATTAAAAGAAAATCATTATTAAGTAAAGTTGTTACAGATGTTAGTCAA
TTGATACCATATTTTCAAAATGGACATTATGTGTCTATGGGTGGATTTGCAGGTACAGGT
TATCCAAAGGTAGTACCAATTGCATTGGCAGACCATGTGGAAAAAAATGGATTACAGGGT
AAATTAAAAATGAATTTATTTGTTGGAGCATCAGTTGGACCAGAGACAGAAGATCGTTGG
GCAATGTTGGATATGATAGATAAGAGATATCCTCACCAAAATGGACATCACATTCGTAAT
GGTATAAATAGCGGTAGAATTCGTTTTGCCGATCAACATTTATCGACATTTGCAAGTGAT
TTATTGGCTGGATATTATACATTGATAAACCACATGGATCAAAGAGAACAATGGATATAG
CAATCGTTGAAGCCACAGAAATCACCGAAGACGGTTGTATAGTACCAGGTGCATCCGTTG
GTATCACACCTGAGATCTTACAAATGGCAGATAAAATCATCATTGAGATTAACACCTCAT
TACCATCGTTCAAAGGGTTGCATGATATGGTGAAAATTGCATTACCT----------
Length of 5' end seq. 647
3' end seq. ID SFH223Z
3' end seq.
>SFH223Z.Seq
----------TGGTTCAATTGCAAACGCTGTCATTGNAGGTCTTTCCAAAGGTCCATTTG
ACAATCTCTCAGTTTGGACTGAAGTTATTCAAGACACTTTCTTGGACTTTTTCGATAATG
GTAAATTGAAATTCGCTTCAGCAACTTCACTTAGATTCTCCCCACCAGGTTTCAATAGAT
TATTCAATAATTGGGAAAATTATAAAAGTAAAATCATCCTTAGAAATCAGGCCATTTCAA
ATGCAGCTGAATTAATTTCACGTGTTGGTTGTATCGCTTTAAATACTCCATGTGAAGTTG
ATATCTATGGTCATGTCAATAGTACCAATACAATGGGTTCAAAAATGTTAAATGGTTTAG
GTGGTAGTGGTGAATTCTTAAGAAATTCAAGAATCTCCATTGTTCACACCCCATCAACTC
GTCCAACTAAAACTGATCCACATGGTATTAGTTGTATCGTTCCTTTCGCCTCTCATATCG
ATCATACAGAACACGACATTGATATCATTGTAACCGAGCAAGGTTTAGCTGATATTCGTG
GTTTGGCACCTTATGAACGTGCTAAAGTTATCATTCAAAATTGTGCTCATCCAATCTATA
AACCAATACTCATGGAATACCTTGAAACTTCTCGTCAAATTTGTTTAAAAAATCATATGG
GACATGAACCACATCAATTAGACAAAGCATTTAAATTTTATACAAATTATCNAAAAAGGA
CTATAAAATNA
Length of 3' end seq. 721
Connected seq. ID SFH223P
Connected seq.
>SFH223P.Seq
ACTTTTTTATTTTTAAAATTAAGGATGCATAAAATTGTTCAACAAGGTAGTAAATCATTA
ATTGAATCAAGAATTAAAAGAAAATCATTATTAAGTAAAGTTGTTACAGATGTTAGTCAA
TTGATACCATATTTTCAAAATGGACATTATGTGTCTATGGGTGGATTTGCAGGTACAGGT
TATCCAAAGGTAGTACCAATTGCATTGGCAGACCATGTGGAAAAAAATGGATTACAGGGT
AAATTAAAAATGAATTTATTTGTTGGAGCATCAGTTGGACCAGAGACAGAAGATCGTTGG
GCAATGTTGGATATGATAGATAAGAGATATCCTCACCAAAATGGACATCACATTCGTAAT
GGTATAAATAGCGGTAGAATTCGTTTTGCCGATCAACATTTATCGACATTTGCAAGTGAT
TTATTGGCTGGATATTATACATTGATAAACCACATGGATCAAAGAGAACAATGGATATAG
CAATCGTTGAAGCCACAGAAATCACCGAAGACGGTTGTATAGTACCAGGTGCATCCGTTG
GTATCACACCTGAGATCTTACAAATGGCAGATAAAATCATCATTGAGATTAACACCTCAT
TACCATCGTTCAAAGGGTTGCATGATATGGTGAAAATTGCATTACCT----------TGG
TTCAATTGCAAACGCTGTCATTGNAGGTCTTTCCAAAGGTCCATTTGACAATCTCTCAGT
TTGGACTGAAGTTATTCAAGACACTTTCTTGGACTTTTTCGATAATGGTAAATTGAAATT
CGCTTCAGCAACTTCACTTAGATTCTCCCCACCAGGTTTCAATAGATTATTCAATAATTG
GGAAAATTATAAAAGTAAAATCATCCTTAGAAATCAGGCCATTTCAAATGCAGCTGAATT
AATTTCACGTGTTGGTTGTATCGCTTTAAATACTCCATGTGAAGTTGATATCTATGGTCA
TGTCAATAGTACCAATACAATGGGTTCAAAAATGTTAAATGGTTTAGGTGGTAGTGGTGA
ATTCTTAAGAAATTCAAGAATCTCCATTGTTCACACCCCATCAACTCGTCCAACTAAAAC
TGATCCACATGGTATTAGTTGTATCGTTCCTTTCGCCTCTCATATCGATCATACAGAACA
CGACATTGATATCATTGTAACCGAGCAAGGTTTAGCTGATATTCGTGGTTTGGCACCTTA
TGAACGTGCTAAAGTTATCATTCAAAATTGTGCTCATCCAATCTATAAACCAATACTCAT
GGAATACCTTGAAACTTCTCGTCAAATTTGTTTAAAAAATCATATGGGACATGAACCACA
TCAATTAGACAAAGCATTTAAATTTTATACAAATTATCNAAAAAGGACTATAAAATNA
Length of connected seq. 1368
Full length Seq ID -
Full length Seq. -
Length of full length seq. -