SFH218 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFH218
Library	SF (Link to library)
Clone ID	SFH218 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U12905-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFH2-A/SFH218Q.Seq.d/
Representative seq. ID	SFH218P (Link to Original site)
Representative DNA sequence	>SFH218 (SFH218Q) /CSM/SF/SFH2-A/SFH218Q.Seq.d/ ATTTATTTGTTAATGTATTATTATTATTATTATTATTATTATTTTTAATATTTTAGAATC AACAATTTTTAAAAACAATTAGAAATATGACAACATTTAGATCAGAATTTGATACATTTG GAGAAGTTAAAGTTAATGATGAAAAATATTGGGGTGCACAAACTCAAAGATCATTAGAAA ATTTTGATATTGGTGGTGAATCAGAAAAGATGCCATTAATGGTTGTTCGTTCATTTGGTA TTTTAAAACGTTGTGCAGCAATTGTAAATAAAAAGTATGGTTTAGATGCAACCATTGCAG ATAATATTGCTAAAGCAGCAACAGAAGTTGTTGAAGGTAAATTAGATGATCAATTCCCAT TGGTAGTTTTTCAAACTGGTTCAGGTACACAATCAAATATGAATGCCAATGAAGTTATCT CAAATCGTGCAATTGAATTAATGACAGGTAAAAGAGATTTCTCAAAGAAATTAGTACATC CAAATGATCATGTCAATAAGAGTCAATCCTCAAATGATACATTCCCAACTTGTATGCACA TTGCTGCTGCAATCTCAATCAATGAGAAATTAGTACCAGCTTTAGAGATGTTATTGGCTG CTATGCGTACCXXXXXXXXXXCCTCCCAAGACTTTACAATTTAGCTCAAGGTGGTACAGC CGTTGGTACAGGTTTAAATACTCCAGTTGGTTTCGATGTTGATATCGCCTCTGAAGTCGC TAAATTCACTGGTCTCCCATTCAAAACCGCTCCAAATAAATTCGAAGCTTTAGCAGCTCA TGATGCTATGGTCGAAGTTAGTGGTGCCCTCAATACCGTCGCTGTCTCTCTCATGAAGAT TGCCAATGATATTCGTTTCTTAGGTTCTGGTCCACGTTGTGGTTTAGGTGAACTCATCCT CCCAGAGAATGAACCAGGTTCATCAATTATGCCTGGTAAGGTCAATCCAACTCAATGTGA AGCTATGACTATGGTTTGTGCTCAAGTTATGGGTAACAATACCACCGTTTCCATCGCTGG TAGCAATGGCCATTTTGAATTAAACGTTTTCAAACCAGTCATCATTAAAAATGTTCTCTC CTCAATTCGTCTCATCGCTGATGCTTCAGTTTCTTTCACTAAACATTGTGTCGTTGGTAT TAAAGCCGATGAAAAGAGAATCGATCAACTCTTACACGAATCCCTCATGTTGGTAACTGC TCTCAATCCATACATTGGTTATGATAAAGCTGCCAAAGCCGCTAAAAAAGCTCACAAAGA AAAAACTACACTCAAAGAAGCTTGTCTCTCATTAGGTTTCACTACCTCTGAAGAATTTNA TAAATGGGTGATCCATCAAAAATGATGGTTCAANAAATAAATAAACTCTTTTTTTCCTTT TTTT
sequence update	2001. 6. 1
Translated Amino Acid sequence	lfvnvllllllllflifNQQFLKTIRNMTTFRSEFDTFGEVKVNDEKYWGAQTQRSLEN FDIGGESEKMPLMVVRSFGILKRCAAIVNKKYGLDATIADNIAKAATEVVEGKLDDQFPL VVFQTGSGTQSNMNANEVISNRAIELMTGKRDFSKKLVHPNDHVNKSQSSNDTFPTCMHI AAAISINEKLVPALEMLLAAMRT--- ---LPRLYNLAQGGTAVGTGLNTPVGFDVDIASEVAKFTGLPFKTAPNKFEALAAHDAMV EVSGALNTVAVSLMKIANDIRFLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEAMTM VCAQVMGNNTTVSIAGSNGHFELNVFKPVIIKNVLSSIRLIADASVSFTKHCVVGIKADE KRIDQLLHESLMLVTALNPYIGYDKAAKAAKKAHKEKTTLKEACLSLGFTTSEEFXKWVI HQKwfxk*insffpff
Translated Amino Acid sequence (All Frames)	Frame A: iyllmyyyyyyyyyfyfrinnfkqleiqhldqnlihleklklmmknigvhklkdhk ililvvnqkrchwlfvhlvfnvvqqliksmvmqplqiillkqqqkllkvnminsh wffklvqvhnqimpmklsqivqlnqvkeisqrnyiqmimsirvnpqmihsqlvct lllqsqsmrnyqlrcywllcv--- ---ppktlqfssrwysrwyrfkysswfrcyrlsrihwspiqnrskirsfssscyg rswcpqyrrclshedcqysflrfwstlwfrthppretrfinyawgqsnsmsydy glcssygqyhrfhrwqwpfikrfqtshhkcsllnsshrcfsffhtlcrwysr* kenrstltriphvgncsqsihwl*scqsrkssqrknytqrslslirfhylrixmgd pskmmvqxinklffsff Frame B: ficciiiiiiiiifnilestifknnkydniiriyiwrss*kilgctnskiirk fywwirkdaingcsfiwyfktlcsnckkvwfrcnhcrycssnrscrirsipi gsfsnwfrytikyecqsylkscnindrkrflkeistskscqesilkyipnlyah cccnlnqeistsfrdvigcyay--- ---LPRLYNLAQGGTAVGTGLNTPVGFDVDIASEVAKFTGLPFKTAPNKFEALAAHDAMV EVSGALNTVAVSLMKIANDIRFLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEAMTM VCAQVMGNNTTVSIAGSNGHFELNVFKPVIIKNVLSSIRLIADASVSFTKHCVVGIKADE KRIDQLLHESLMLVTALNPYIGYDKAAKAAKKAHKEKTTLKEACLSLGFTTSEEFXKWVI HQKwfxkinsffpff Frame C: lfvnvllllllllflifNQQFLKTIRNMTTFRSEFDTFGEVKVNDEKYWGAQTQRSLEN FDIGGESEKMPLMVVRSFGILKRCAAIVNKKYGLDATIADNIAKAATEVVEGKLDDQFPL VVFQTGSGTQSNMNANEVISNRAIELMTGKRDFSKKLVHPNDHVNKSQSSNDTFPTCMHI AAAISINEKLVPALEMLLAAMRT--- ---sqdftilkvvqplvqvilqlvsmlisplkslnslvshskplqinsklqlmmlws klvvpsipslslsrlpmifvsvlvhvvvvnsssqrmnqvhqlclvrsiqlnvkllw fvlklwvtippfpslvamailntfsnqsslkmfspqfvsslmlqflslnivslvlkpmk resinsytnpscwllsihtlvmiklpkplkkltkkklhskklvshvslplknxings ikndgsxnk*tlfflf
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFH218 (SFH218Q) /CSM/SF/SFH2-A/SFH218Q.Seq.d/ 2531 0.0 SFC288 (SFC288Q) /CSM/SF/SFC2-D/SFC288Q.Seq.d/ 1439 0.0 CFG824 (CFG824Q) /CSM/CF/CFG8-A/CFG824Q.Seq.d/ 1407 0.0 AFJ616 (AFJ616Q) /CSM/AF/AFJ6-A/AFJ616Q.Seq.d/ 1388 0.0 AFL652 (AFL652Q) /CSM/AF/AFL6-C/AFL652Q.Seq.d/ 1384 0.0 AHJ403 (AHJ403Q) /CSM/AH/AHJ4-A/AHJ403Q.Seq.d/ 1378 0.0 AFD818 (AFD818Q) /CSM/AF/AFD8-A/AFD818Q.Seq.d/ 1378 0.0 SLG169 (SLG169Q) /CSM/SL/SLG1-C/SLG169Q.Seq.d/ 1370 0.0 VFD811 (VFD811Q) /CSM/VF/VFD8-A/VFD811Q.Seq.d/ 1346 0.0 AFF242 (AFF242Q) /CSM/AF/AFF2-B/AFF242Q.Seq.d/ 1344 0.0
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AL437831\|AL437831.1 T3 end of clone BC0AA011H02 of library BC0AA from strain CBS 767 ofDebaryomyces hansenii. 98 2e-42 5 X78576\|X78576.1 R.oryzae fumR gene. 94 7e-33 7 AL395438\|AL395438.1 T7 end of clone AR0AA023G10 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 60 9e-33 6 U32820\|U32820.1 Haemophilus influenzae Rd section 135 of 163 of the complete genome. 72 3e-29 6 AL393799\|AL393799.1 T3 end of clone AR0AA013C01 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 60 4e-29 6 Z73618\|Z73618.1 S.cerevisiae chromosome XVI reading frame ORF YPL262w. 64 6e-28 5 M15502\|M15502.1 Human mitochondrial fumarase mRNA, complete cds. 42 6e-26 8 AY420078\|AY420078.1 Homo sapiens FH gene, VIRTUAL TRANSCRIPT, partial sequence, genomic survey sequence. 42 8e-26 8 BT009839\|BT009839.1 Homo sapiens fumarate hydratase mRNA, complete cds. 42 8e-26 8 U48857\|U48857.1 Human fumarase mRNA, nuclear gene encoding mitochondrial protein, complete cds. 42 1e-25 8
dna update	2003.12.29
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (P93033) RecName: Full=Fumarate hydratase 1, mitochondrial; ... 328 e-150 AK316771_1(AK316771\|pid:none) Arabidopsis thaliana AT2G47510 mRN... 326 e-150 AK243527_1(AK243527\|pid:none) Oryza sativa Japonica Group cDNA, ... 322 e-149 AP008209_1410(AP008209\|pid:none) Oryza sativa (japonica cultivar... 322 e-149 GM959526_1(GM959526\|pid:none) Sequence 6480 from Patent WO200814... 317 e-149 (Q9FI53) RecName: Full=Fumarate hydratase 2, chloroplastic; ... 327 e-149 GM959108_1(GM959108\|pid:none) Sequence 6062 from Patent WO200814... 317 e-146 AK316874_1(AK316874\|pid:none) Arabidopsis thaliana AT5G50950 mRN... 317 e-146 GM959106_1(GM959106\|pid:none) Sequence 6060 from Patent WO200814... 316 e-144 CR382138_231(CR382138\|pid:none) Debaryomyces hansenii strain CBS... 312 e-141
protein update	2009. 5.25
PSORT	psg: 0.60 gvh: 0.25 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.45 mip: 0.04 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 32.0 %: mitochondrial 32.0 %: nuclear 24.0 %: cytoplasmic 12.0 %: cytoskeletal >> prediction for SFH218 is mit
5' end seq. ID	SFH218F
5' end seq.	>SFH218F.Seq ATTTATTTGTTAATGTATTATTATTATTATTATTATTATTATTTTTAATATTTTAGAATC AACAATTTTTAAAAACAATTAGAAATATGACAACATTTAGATCAGAATTTGATACATTTG GAGAAGTTAAAGTTAATGATGAAAAATATTGGGGTGCACAAACTCAAAGATCATTAGAAA ATTTTGATATTGGTGGTGAATCAGAAAAGATGCCATTAATGGTTGTTCGTTCATTTGGTA TTTTAAAACGTTGTGCAGCAATTGTAAATAAAAAGTATGGTTTAGATGCAACCATTGCAG ATAATATTGCTAAAGCAGCAACAGAAGTTGTTGAAGGTAAATTAGATGATCAATTCCCAT TGGTAGTTTTTCAAACTGGTTCAGGTACACAATCAAATATGAATGCCAATGAAGTTATCT CAAATCGTGCAATTGAATTAATGACAGGTAAAAGAGATTTCTCAAAGAAATTAGTACATC CAAATGATCATGTCAATAAGAGTCAATCCTCAAATGATACATTCCCAACTTGTATGCACA TTGCTGCTGCAATCTCAATCAATGAGAAATTAGTACCAGCTTTAGAGATGTTATTGGCTG CTATGCGTACC----------
Length of 5' end seq.	611
3' end seq. ID	SFH218Z
3' end seq.	>SFH218Z.Seq ----------CCTCCCAAGACTTTACAATTTAGCTCAAGGTGGTACAGCCGTTGGTACAG GTTTAAATACTCCAGTTGGTTTCGATGTTGATATCGCCTCTGAAGTCGCTAAATTCACTG GTCTCCCATTCAAAACCGCTCCAAATAAATTCGAAGCTTTAGCAGCTCATGATGCTATGG TCGAAGTTAGTGGTGCCCTCAATACCGTCGCTGTCTCTCTCATGAAGATTGCCAATGATA TTCGTTTCTTAGGTTCTGGTCCACGTTGTGGTTTAGGTGAACTCATCCTCCCAGAGAATG AACCAGGTTCATCAATTATGCCTGGTAAGGTCAATCCAACTCAATGTGAAGCTATGACTA TGGTTTGTGCTCAAGTTATGGGTAACAATACCACCGTTTCCATCGCTGGTAGCAATGGCC ATTTTGAATTAAACGTTTTCAAACCAGTCATCATTAAAAATGTTCTCTCCTCAATTCGTC TCATCGCTGATGCTTCAGTTTCTTTCACTAAACATTGTGTCGTTGGTATTAAAGCCGATG AAAAGAGAATCGATCAACTCTTACACGAATCCCTCATGTTGGTAACTGCTCTCAATCCAT ACATTGGTTATGATAAAGCTGCCAAAGCCGCTAAAAAAGCTCACAAAGAAAAAACTACAC TCAAAGAAGCTTGTCTCTCATTAGGTTTCACTACCTCTGAAGAATTTNATAAATGGGTGA TCCATCAAAAATGATGGTTCAANAAATAAATAAACTCTTTTTTTCCTTTTTTT
Length of 3' end seq.	763
Connected seq. ID	SFH218P
Connected seq.	>SFH218P.Seq ATTTATTTGTTAATGTATTATTATTATTATTATTATTATTATTTTTAATATTTTAGAATC AACAATTTTTAAAAACAATTAGAAATATGACAACATTTAGATCAGAATTTGATACATTTG GAGAAGTTAAAGTTAATGATGAAAAATATTGGGGTGCACAAACTCAAAGATCATTAGAAA ATTTTGATATTGGTGGTGAATCAGAAAAGATGCCATTAATGGTTGTTCGTTCATTTGGTA TTTTAAAACGTTGTGCAGCAATTGTAAATAAAAAGTATGGTTTAGATGCAACCATTGCAG ATAATATTGCTAAAGCAGCAACAGAAGTTGTTGAAGGTAAATTAGATGATCAATTCCCAT TGGTAGTTTTTCAAACTGGTTCAGGTACACAATCAAATATGAATGCCAATGAAGTTATCT CAAATCGTGCAATTGAATTAATGACAGGTAAAAGAGATTTCTCAAAGAAATTAGTACATC CAAATGATCATGTCAATAAGAGTCAATCCTCAAATGATACATTCCCAACTTGTATGCACA TTGCTGCTGCAATCTCAATCAATGAGAAATTAGTACCAGCTTTAGAGATGTTATTGGCTG CTATGCGTACC----------CCTCCCAAGACTTTACAATTTAGCTCAAGGTGGTACAGC CGTTGGTACAGGTTTAAATACTCCAGTTGGTTTCGATGTTGATATCGCCTCTGAAGTCGC TAAATTCACTGGTCTCCCATTCAAAACCGCTCCAAATAAATTCGAAGCTTTAGCAGCTCA TGATGCTATGGTCGAAGTTAGTGGTGCCCTCAATACCGTCGCTGTCTCTCTCATGAAGAT TGCCAATGATATTCGTTTCTTAGGTTCTGGTCCACGTTGTGGTTTAGGTGAACTCATCCT CCCAGAGAATGAACCAGGTTCATCAATTATGCCTGGTAAGGTCAATCCAACTCAATGTGA AGCTATGACTATGGTTTGTGCTCAAGTTATGGGTAACAATACCACCGTTTCCATCGCTGG TAGCAATGGCCATTTTGAATTAAACGTTTTCAAACCAGTCATCATTAAAAATGTTCTCTC CTCAATTCGTCTCATCGCTGATGCTTCAGTTTCTTTCACTAAACATTGTGTCGTTGGTAT TAAAGCCGATGAAAAGAGAATCGATCAACTCTTACACGAATCCCTCATGTTGGTAACTGC TCTCAATCCATACATTGGTTATGATAAAGCTGCCAAAGCCGCTAAAAAAGCTCACAAAGA AAAAACTACACTCAAAGAAGCTTGTCTCTCATTAGGTTTCACTACCTCTGAAGAATTTNA TAAATGGGTGATCCATCAAAAATGATGGTTCAANAAATAAATAAACTCTTTTTTTCCTTT TTTT
Length of connected seq.	1374
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas