SFH204
Library SF
(Link to library)
Clone ID SFH204
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SFH204P
(Link to Original site)
Representative DNA sequence
>SFH204 (SFH204Q) /CSM/SF/SFH2-A/SFH204Q.Seq.d/
ATGAATCCAACCAATACAGTATTTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGAC
AAAGAAGTTCAAAGTGATATGAAACATTGGCCATTCAAAGTTATTCCAAAGGATGGTGAT
AAGCCACATATTCAAGTTGAATTCAAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATC
TCTTCAATGGTACTCTTAAAAATGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATT
AATAATGCTGTAATTACCGTTCCAGCTTATTTCAATGATAGTCAACGTCAAGCAACCAAA
GATGCTGGTACAATTTCAAAATTAAATGTTCAACGTATTATTAATGAACCAACTGCTGCT
GCTATTGCTTATGGTTTAGAAAAGAAAGGTTCTGGTGAAAAGAATATTTTAATTTTCGAT
TTAGGTGGTGGTACATTTGATGTTTCTCTCCTTACCATTGAAGATGGTGTATTTGAAGTT
AAAGCCACCGCTGGTGATACTCATTTAGGTGGTGAAGATTTTGATAATCGTCTCGTTTCT
CACTTTGTTGATGAATTTAAACGTAAACATAAAAAAGATATTATGGGTAATCAACGTGCT
GTTCGTCGTTTAAGAACTGCTTGTGAACGTGCCAAAXXXXXXXXXXGTTTAGATCCAGTT
GAAAAAGTATTAAAAGATAGTAAATTGGATAAGAAATCAATTCATGAAATTGTTTTAGTT
GGTGGTTCAACTCGTATTCCAAAAGGTACAACAATTATTACAAGAATTTTTCAATGGTAA
AGAATTGAATAAATCAATTAATCCAGATGAAGCTGTTGCTTATGGTGCCGCTGTACAAGC
TGCAATTCTTTCAAATGAAGGTGGTGCTAAAGTTGCTGATCTTTTATTGTTAGATGTTGC
ACCATTATCAATGGGTTTAGAAACTGCTGGTGGTGTTATGACAACTCTTATTCCAAGAAA
TACAACAATTCCATGTAAGAAAACTCAAACCTTCTCTACATACTCTGATAATCAACCAGG
TGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGG
TAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTAC
ATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAA
CAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAA
AATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATNAACAACAAAAAGATCGTGTNAA
TCAAAGAATAAATNGAAAATTATGCATTCACTG
sequence update 2001. 6. 1
Translated Amino Acid sequence
MNPTNTVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFKGETKVFSPEEI
SSMVLLKMKETAEAYLGKTINNAVITVPAYFNDSQRQATKDAGTISKLNVQRIINEPTAA
AIAYGLEKKGSGEKNILIFDLGGGTFDVSLLTIEDGVFEVKATAGDTHLGGEDFDNRLVS
HFVDEFKRKHKKDIMGNQRAVRRLRTACERAK---

---LDPVEKVLKDSKLDKKSIHEIVLVGGSTRIPKGTTIITRIFQW*rie*in*sr*scc
lwcrctscnsfk*rwc*sc*sfivrcctiingfrncwwcydnsyskkynnsm*ensnlly
il**strcinssl*r*tcydqr**fig*i*tfwyststkrctts*syi*c*ckwylkcis
*r*inw*qtkdynyq**rssfkrrn*kngc*creiqttrxttkrscxsknkxkimhsl


Translated Amino Acid sequence (All Frames)
Frame A:
MNPTNTVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFKGETKVFSPEEI
SSMVLLKMKETAEAYLGKTINNAVITVPAYFNDSQRQATKDAGTISKLNVQRIINEPTAA
AIAYGLEKKGSGEKNILIFDLGGGTFDVSLLTIEDGVFEVKATAGDTHLGGEDFDNRLVS
HFVDEFKRKHKKDIMGNQRAVRRLRTACERAK---

---v*iqlkky*kivnwirnqfmklf*lvvqlvfqkvqqllqeffngkelnksinpdeav
aygaavqaailsneggakvadlllldvaplsmgletaggvmttliprnttipckktqtfs
tysdnqpgvliqvyegeramtkdnnllgkfelsgippaprgvpqvevtfdvdangilnvs
aedkstgnkqkititndkgrlskeeiekmvadaekfkqqdxqqkdrvnqrinxklcih

Frame B:
*iqpiqylmlnv*lvvnlvtkkfkvi*nighsklfqrmvishifklnskvklkfshqkks
lqwys*k*kkplklilvkpliml*lpfqlismivnvkqpkmlvqfqn*mfnvllmnqlll
lllmv*krkvlvkrif*fsi*vvvhlmflslplkmvylklkpplvili*vvkiliivsfl
tllmnlnvnikkilwvinvlfvv*ellvnvp---

---frss*ksikr**ig*eins*ncfswwfnsyskrynnyyknfsmvkn*inqliqmkll
lmvplyklqffqmkvvlkllifyc*mlhhyqwv*kllvvl*qllfqeiqqfhvrklkpsl
htliinqvy*fkfmkvnvl*pkiiiywvnlnflvfhqhqevyhklklhlmlmqmvs*myq
lkinqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkxnnkkivxike*xenyaft

Frame C:
esnqysi*c*tfnws*i**qrssk*yetlaiqsyskgw**atyss*iqr*n*sfltrrnl
fngtlknernr*slsw*nh**ccnyrsslfq**stssnqrcwynfkikcstyy**tnccc
yclwfrkerfw*keyfnfrfrwwyi*cfspyh*rwci*s*shrw*ysfrw*rf**ssrfs
lc**i*t*t*kryyg*stccssfkncl*tcq---

---LDPVEKVLKDSKLDKKSIHEIVLVGGSTRIPKGTTIITRIFQW*rie*in*sr*scc
lwcrctscnsfk*rwc*sc*sfivrcctiingfrncwwcydnsyskkynnsm*ensnlly
il**strcinssl*r*tcydqr**fig*i*tfwyststkrctts*syi*c*ckwylkcis
*r*inw*qtkdynyq**rssfkrrn*kngc*creiqttrxttkrscxsknkxkimhsl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFH204 (SFH204Q) /CSM/SF/SFH2-A/SFH204Q.Seq.d/ 2605 0.0
SFK589 (SFK589Q) /CSM/SF/SFK5-D/SFK589Q.Seq.d/ 1360 0.0
SFD523 (SFD523Q) /CSM/SF/SFD5-A/SFD523Q.Seq.d/ 1344 0.0
SHE551 (SHE551Q) /CSM/SH/SHE5-C/SHE551Q.Seq.d/ 1340 0.0
AFF221 (AFF221Q) /CSM/AF/AFF2-A/AFF221Q.Seq.d/ 1338 0.0
CHC186 (CHC186Q) /CSM/CH/CHC1-D/CHC186Q.Seq.d/ 1334 0.0
SFG805 (SFG805Q) /CSM/SF/SFG8-A/SFG805Q.Seq.d/ 1332 0.0
SFB318 (SFB318Q) /CSM/SF/SFB3-A/SFB318Q.Seq.d/ 1332 0.0
CHQ192 (CHQ192Q) /CSM/CH/CHQ1-D/CHQ192Q.Seq.d/ 1332 0.0
AFE717 (AFE717Q) /CSM/AF/AFE7-A/AFE717Q.Seq.d/ 1332 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70). 1237 0.0 4
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,. 1229 0.0 4
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds. 293 0.0 9
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 293 0.0 13
A58313|A58313.1 Sequence 1 from Patent WO9636707. 133 e-157 14
AX536934|AX536934.1 Sequence 535 from Patent WO02064766. 133 e-156 14
Z30210|Z30210.1 C.albicans (ATCC 20955) cahsp70 mRNA for heat shock protein 70. 133 e-156 14
AF278536|AF278536.1 Parastrongyloides trichosuri heat shock 70 protein gene, complete cds. 157 e-153 14
AJ310880|AJ310880.1 Cryptosporidium baileyi partial hsp70 gene for heat shock protein 70. 100 e-148 12
AF221539|AF221539.1 Cryptosporidium baileyi heat shock protein 70 (HSP70) gene, partial cds. 100 e-148 12
dna update 2003.12.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 435 0.0
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ... 433 0.0
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2; ... 404 0.0
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc... 401 0.0
EU679414_1(EU679414|pid:none) Tetranychus cinnabarinus heat shoc... 371 e-169
FB790112_1(FB790112|pid:none) Sequence 9385 from Patent WO200803... 360 e-169
EU679412_1(EU679412|pid:none) Tetranychus cinnabarinus heat shoc... 366 e-168
AJ783714_1(AJ783714|pid:none) Mytilus galloprovincialis hsc71 ge... 361 e-168
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3; 376 e-168
FB790476_1(FB790476|pid:none) Sequence 9749 from Patent WO200803... 358 e-168
protein update 2009. 5.25
PSORT

psg: 0.52 gvh: 0.25 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.04
nuc: 0.14 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
20.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for SFH204 is nuc

5' end seq. ID SFH204F
5' end seq.
>SFH204F.Seq
ATGAATCCAACCAATACAGTATTTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGAC
AAAGAAGTTCAAAGTGATATGAAACATTGGCCATTCAAAGTTATTCCAAAGGATGGTGAT
AAGCCACATATTCAAGTTGAATTCAAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATC
TCTTCAATGGTACTCTTAAAAATGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATT
AATAATGCTGTAATTACCGTTCCAGCTTATTTCAATGATAGTCAACGTCAAGCAACCAAA
GATGCTGGTACAATTTCAAAATTAAATGTTCAACGTATTATTAATGAACCAACTGCTGCT
GCTATTGCTTATGGTTTAGAAAAGAAAGGTTCTGGTGAAAAGAATATTTTAATTTTCGAT
TTAGGTGGTGGTACATTTGATGTTTCTCTCCTTACCATTGAAGATGGTGTATTTGAAGTT
AAAGCCACCGCTGGTGATACTCATTTAGGTGGTGAAGATTTTGATAATCGTCTCGTTTCT
CACTTTGTTGATGAATTTAAACGTAAACATAAAAAAGATATTATGGGTAATCAACGTGCT
GTTCGTCGTTTAAGAACTGCTTGTGAACGTGCCAAA----------
Length of 5' end seq. 636
3' end seq. ID SFH204Z
3' end seq.
>SFH204Z.Seq
----------GTTTAGATCCAGTTGAAAAAGTATTAAAAGATAGTAAATTGGATAAGAAA
TCAATTCATGAAATTGTTTTAGTTGGTGGTTCAACTCGTATTCCAAAAGGTACAACAATT
ATTACAAGAATTTTTCAATGGTAAAGAATTGAATAAATCAATTAATCCAGATGAAGCTGT
TGCTTATGGTGCCGCTGTACAAGCTGCAATTCTTTCAAATGAAGGTGGTGCTAAAGTTGC
TGATCTTTTATTGTTAGATGTTGCACCATTATCAATGGGTTTAGAAACTGCTGGTGGTGT
TATGACAACTCTTATTCCAAGAAATACAACAATTCCATGTAAGAAAACTCAAACCTTCTC
TACATACTCTGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTAT
GACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAG
AGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATC
AGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCG
TCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGA
TNAACAACAAAAAGATCGTGTNAATCAAAGAATAAATNGAAAATTATGCATTCACTG
Length of 3' end seq. 707
Connected seq. ID SFH204P
Connected seq.
>SFH204P.Seq
ATGAATCCAACCAATACAGTATTTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGAC
AAAGAAGTTCAAAGTGATATGAAACATTGGCCATTCAAAGTTATTCCAAAGGATGGTGAT
AAGCCACATATTCAAGTTGAATTCAAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATC
TCTTCAATGGTACTCTTAAAAATGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATT
AATAATGCTGTAATTACCGTTCCAGCTTATTTCAATGATAGTCAACGTCAAGCAACCAAA
GATGCTGGTACAATTTCAAAATTAAATGTTCAACGTATTATTAATGAACCAACTGCTGCT
GCTATTGCTTATGGTTTAGAAAAGAAAGGTTCTGGTGAAAAGAATATTTTAATTTTCGAT
TTAGGTGGTGGTACATTTGATGTTTCTCTCCTTACCATTGAAGATGGTGTATTTGAAGTT
AAAGCCACCGCTGGTGATACTCATTTAGGTGGTGAAGATTTTGATAATCGTCTCGTTTCT
CACTTTGTTGATGAATTTAAACGTAAACATAAAAAAGATATTATGGGTAATCAACGTGCT
GTTCGTCGTTTAAGAACTGCTTGTGAACGTGCCAAA----------GTTTAGATCCAGTT
GAAAAAGTATTAAAAGATAGTAAATTGGATAAGAAATCAATTCATGAAATTGTTTTAGTT
GGTGGTTCAACTCGTATTCCAAAAGGTACAACAATTATTACAAGAATTTTTCAATGGTAA
AGAATTGAATAAATCAATTAATCCAGATGAAGCTGTTGCTTATGGTGCCGCTGTACAAGC
TGCAATTCTTTCAAATGAAGGTGGTGCTAAAGTTGCTGATCTTTTATTGTTAGATGTTGC
ACCATTATCAATGGGTTTAGAAACTGCTGGTGGTGTTATGACAACTCTTATTCCAAGAAA
TACAACAATTCCATGTAAGAAAACTCAAACCTTCTCTACATACTCTGATAATCAACCAGG
TGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGG
TAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTAC
ATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAA
CAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAA
AATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATNAACAACAAAAAGATCGTGTNAA
TCAAAGAATAAATNGAAAATTATGCATTCACTG
Length of connected seq. 1343
Full length Seq ID -
Full length Seq. -
Length of full length seq. -