SFH176
Library SF
(Link to library)
Clone ID SFH176
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SFH176Z
(Link to Original site)
Representative DNA sequence
>SFH176 (SFH176Q) /CSM/SF/SFH1-D/SFH176Q.Seq.d/
XXXXXXXXXXAGTTACCTTTGGCAAAGCATCGGGTCTTGGTCAACTTGTAGCCNACTGTT
CTNCAAAACCANATTACCCTTGGTAGTATTGTCTTTATTGATACAAATGGTAATGGTATT
CAAGAACCATGGGAGCAAGGTAAACAAGGTGTTGCCGTTAGTTTATTATTTGCCAATGGT
ACCTTAATTCAAAAACAATCAACCGATTCANTAGGTCTATTTAAATTCATTAATCCACCA
TACCAAAATCAGGCAATATATTATTACAGCTGATTCAGTTACACTTTCAATTATTCCATC
ACCTCTACCAACTTCATCTATTCCTTATAACGCTGCAACAATGGTTAATGNAAAAGCAAC
AATTTCNAATANTCATATTTTAGATCCAATGATAGCTTCAAGTAGCANATGATTTANAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---lplakhrvlvnl*PTVLQNXITLGSIVFIDTNGNGIQEPWEQGKQGVAVSLLFANGT
LIQKQSTDSXGLFKFINPPYQNQAIYYYS*fsytfnysitstnfiysl*rcnng*xksnn
fxxsyfrsndsfk*xmix


Translated Amino Acid sequence (All Frames)
Frame A:
---vtfgkasglgqlvaxcsxkpxypw*ycly*ykw*wysrtmgar*trccr*fiicqwy
lnsktinrfxrsi*ih*stipksgnillqliqlhfqlfhhlyqlhlflitlqqwlmxkqq
fxixif*iq**lqvaxdlx


Frame B:
---lplakhrvlvnl*PTVLQNXITLGSIVFIDTNGNGIQEPWEQGKQGVAVSLLFANGT
LIQKQSTDSXGLFKFINPPYQNQAIYYYS*fsytfnysitstnfiysl*rcnng*xksnn
fxxsyfrsndsfk*xmix


Frame C:
---ylwqsigswstcsxlfxktxlplvvlslliqmvmvfknhgskvnkvlplvyylpmvp
*fknnqpix*vylnslihhtkirqyiitadsvtlsiipsplptssipynaatmvnxkati
snxhildpmiasssx*fx


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFH176 (SFH176Q) /CSM/SF/SFH1-D/SFH176Q.Seq.d/ 757 0.0
SHL451 (SHL451Q) /CSM/SH/SHL4-C/SHL451Q.Seq.d/ 700 0.0
SHL318 (SHL318Q) /CSM/SH/SHL3-A/SHL318Q.Seq.d/ 700 0.0
SHL317 (SHL317Q) /CSM/SH/SHL3-A/SHL317Q.Seq.d/ 700 0.0
SHL194 (SHL194Q) /CSM/SH/SHL1-D/SHL194Q.Seq.d/ 700 0.0
SHK656 (SHK656Q) /CSM/SH/SHK6-C/SHK656Q.Seq.d/ 700 0.0
SHJ657 (SHJ657Q) /CSM/SH/SHJ6-C/SHJ657Q.Seq.d/ 700 0.0
SHJ614 (SHJ614Q) /CSM/SH/SHJ6-A/SHJ614Q.Seq.d/ 700 0.0
SHG837 (SHG837Q) /CSM/SH/SHG8-B/SHG837Q.Seq.d/ 700 0.0
SHG543 (SHG543Q) /CSM/SH/SHG5-B/SHG543Q.Seq.d/ 700 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC145477|AC145477.2 Oryza sativa (japonica cultivar-group) chromosome 5 clone B1402B06, complete sequence. 36 1.0 4
CC476890|CC476890.1 CH240_302F10.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_302F10, genomic survey sequence. 44 1.5 1
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 34 3.5 5
AP003926|AP003926.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1005_E03, WORKING DRAFT SEQUENCE, 1 ordered pieces. 36 5.1 3
AP003898|AP003898.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1663_D06. 36 5.5 3
AC099774|AC099774.6 Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence. 36 5.5 5
AC026891|AC026891.2 Mus musculus chromosome 6 clone RP23-56M2 strain C57BL6/J, WORKING DRAFT SEQUENCE, 17 ordered pieces. 42 5.9 1
AP005576|AP005576.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1610_C11, WORKING DRAFT SEQUENCE, 1 ordered pieces. 42 5.9 1
AF107131|AF107131.1 Picea abies clone PAB20D12 repetitive DNA sequence. 42 5.9 1
AC102569|AC102569.18 Mus musculus chromosome 12 clone RP23-226F7 map 12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces. 42 5.9 1
dna update 2003.12.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 52 6e-06
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 52 8e-06
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei... 47 3e-04
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD... 47 3e-04
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD... 47 3e-04
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD... 47 3e-04
AM076227_1(AM076227|pid:none) Staphylococcus aureus partial sdrD... 47 3e-04
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD... 47 3e-04
(Q8KWM1) RecName: Full=Serine-aspartate repeat-containing protei... 47 3e-04
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur... 47 3e-04
protein update 2009. 5.25
PSORT

psg: 0.94 gvh: 0.51 alm: 0.44 top: 0.33 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: extracellular, including cell wall
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SFH176 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFH176Z
3' end seq.
>SFH176Z.Seq
----------AGTTACCTTTGGCAAAGCATCGGGTCTTGGTCAACTTGTAGCCNACTGTT
CTNCAAAACCANATTACCCTTGGTAGTATTGTCTTTATTGATACAAATGGTAATGGTATT
CAAGAACCATGGGAGCAAGGTAAACAAGGTGTTGCCGTTAGTTTATTATTTGCCAATGGT
ACCTTAATTCAAAAACAATCAACCGATTCANTAGGTCTATTTAAATTCATTAATCCACCA
TACCAAAATCAGGCAATATATTATTACAGCTGATTCAGTTACACTTTCAATTATTCCATC
ACCTCTACCAACTTCATCTATTCCTTATAACGCTGCAACAATGGTTAATGNAAAAGCAAC
AATTTCNAATANTCATATTTTAGATCCAATGATAGCTTCAAGTAGCANATGATTTANAT
Length of 3' end seq. 409
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -