SFH164
Library SF
(Link to library)
Clone ID SFH164
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15051-1
Original site URL
Representative seq. ID SFH164Z
(Link to Original site)
Representative DNA sequence
>SFH164 (SFH164Q) /CSM/SF/SFH1-C/SFH164Q.Seq.d/
XXXXXXXXXXAGGTANAGTTANAACCTCACGANATTTCATTTTTTACAATAACAAGGTAT
CAANAGATAACTNTGTTTNTCATCAAGGTGATAATTTAACAGGTCAAGGTGAANGTGATN
ATGAAATTGTCCTNGTAAACTTACAAGCAGTTTNACCANACGTCACTNGTTTGGTTTTCG
CTGTCNCCATTCATTTAGCCGATGAAANAANACAAAACTTTACAATGGNACCAANAGCTT
TCATTNGTGTTGCCAATCAANAAACTGGTANAAANATCTGTCGTTACGATCTCTCTCAAN
AAGGTGGNCCAAACNCTGCCCNCANTGCTGGTGAAGTTTATCGTGATCCATCAAATCCAA
ACAATTGGTCNTTTGNTGCTGTTGGTAAAGGNANGCAAGGCGCTCTTCCAGGTTTACNCC
AAATCNTTGGNTGNCAATAAATTTAATATTATTANTTAATTTAAAAAAAAAAAAAATTAA
AAAAAAAATAACAAACAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---GXVXTSRXFIFYNNKVSXDNXVXHQGDNLTGQGEXDXEIVLVNLQAVXPXVTXLVFA
VXIHLADEXXQNFTMXPXAFIXVANQXTGXXICRYDLSQXGGPNXAXXAGEVYRDPSNPN
NWSFXAVGKGXQGALPGLXQIXGXQ*i*yyxli*kkkklkkk*qt


Translated Amino Acid sequence (All Frames)
Frame A:
---GXVXTSRXFIFYNNKVSXDNXVXHQGDNLTGQGEXDXEIVLVNLQAVXPXVTXLVFA
VXIHLADEXXQNFTMXPXAFIXVANQXTGXXICRYDLSQXGGPNXAXXAGEVYRDPSNPN
NWSFXAVGKGXQGALPGLXQIXGXQ*i*yyxli*kkkklkkk*qt


Frame B:
---vxlxphxisfftitryqxitxfxikvii*qvkvxvxmklsx*tykqfxxtslvwfsl
spfi*pmkxxktlqwxqxlsxvlpixklvxxsvvtislxkvxqtlpxxlvkfivihqiqt
igxlxllvkxxkalfqvyxkslxxnkfniix*fkkkkn*kknnkq


Frame C:
---xsxnltxfhflq*qgixr*lcxssr**fnrsr*x*x*ncpxkltssxtxrhxfgfrc
xhsfsr*xxtklyngtxsfhxccqsxnwxkxlslrslsxrwxkxcpxcw*sls*sikskq
lvxxccw*rxarrssrftpnxwxxinlillxnlkkkkikkkitnn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFH164 (SFH164Q) /CSM/SF/SFH1-C/SFH164Q.Seq.d/ 688 0.0
SLE541 (SLE541Q) /CSM/SL/SLE5-B/SLE541Q.Seq.d/ 664 0.0
SFC662 (SFC662Q) /CSM/SF/SFC6-C/SFC662Q.Seq.d/ 652 0.0
SLI206 (SLI206Q) /CSM/SL/SLI2-A/SLI206Q.Seq.d/ 650 0.0
SLE480 (SLE480Q) /CSM/SL/SLE4-D/SLE480Q.Seq.d/ 648 0.0
SLA210 (SLA210Q) /CSM/SL/SLA2-A/SLA210Q.Seq.d/ 644 0.0
FC-BP18 (FC-BP18Q) /CSM/FC/FC-BP/FC-BP18Q.Seq.d/ 632 e-180
CHG709 (CHG709Q) /CSM/CH/CHG7-A/CHG709Q.Seq.d/ 617 e-176
VFB822 (VFB822Q) /CSM/VF/VFB8-A/VFB822Q.Seq.d/ 615 e-175
CFF818 (CFF818Q) /CSM/CF/CFF8-A/CFF818Q.Seq.d/ 615 e-175

own update 2002.10.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strainAX4, complete sequence. 664 0.0 1
X55975|X55975.1 D.discoideum CAPP1 gene for cyclic AMP-binding protein (variant V12M2). 626 e-176 1
X52688|X52688.1 D.discoideum CABP1 gene for CABP1 cAMP binding protein. 535 e-175 3
M36176|M36176.1 D.discoideum cAMP binding protein mRNA. 535 e-175 3
M36175|M36175.1 D.discoideum p31 (CABP1-related gene) mRNA, complete cds. 72 1e-23 3
M36174|M36174.1 D.discoideum p34 (CABP1-related gene) mRNA, complete cds. 72 9e-22 3
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 72 1e-19 5
BZ696479|BZ696479.1 SP__Ba0080H18.f SP__Ba Sorghum propinquum genomic clone SP__Ba0080H18 5', DNA sequence. 44 1.8 1
AL845419|AL845419.18 Zebrafish DNA sequence from clone CH211-198O19 in linkage group 16. 38 1.9 2
BX649301|BX649301.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-208D13. 42 7.1 1
dna update 2003.12.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X52688_2(X52688|pid:none) D.discoideum CABP1 gene for CABP1 cAMP... 202 4e-51
M36176_1(M36176|pid:none) D.discoideum cAMP binding protein mRNA... 202 4e-51
(P34122) RecName: Full=cAMP-binding protein 2; Short=CA... 162 5e-39
B49752(B49752) cAMP-binding protein 1 homolog 31K form - slime m... 162 5e-39
M36174_1(M36174|pid:none) D.discoideum p34 (CABP1-related gene) ... 158 6e-38
BA000030_900(BA000030|pid:none) Streptomyces avermitilis MA-4680... 113 2e-24
DQ164098_23(DQ164098|pid:none) Streptomyces hygroscopicus subsp.... 113 3e-24
CP000432_198(CP000432|pid:none) Rhodococcus jostii RHA1 plasmid ... 112 6e-24
CP000230_890(CP000230|pid:none) Rhodospirillum rubrum ATCC 11170... 110 1e-23
(P18782) RecName: Full=Tellurium resistance protein terE; &E307... 110 2e-23
protein update 2009. 5.25
PSORT

psg: 0.67 gvh: 0.55 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.50
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
20.0 %: mitochondrial
16.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal

>> prediction for SFH164 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFH164Z
3' end seq.
>SFH164Z.Seq
----------AGGTANAGTTANAACCTCACGANATTTCATTTTTTACAATAACAAGGTAT
CAANAGATAACTNTGTTTNTCATCAAGGTGATAATTTAACAGGTCAAGGTGAANGTGATN
ATGAAATTGTCCTNGTAAACTTACAAGCAGTTTNACCANACGTCACTNGTTTGGTTTTCG
CTGTCNCCATTCATTTAGCCGATGAAANAANACAAAACTTTACAATGGNACCAANAGCTT
TCATTNGTGTTGCCAATCAANAAACTGGTANAAANATCTGTCGTTACGATCTCTCTCAAN
AAGGTGGNCCAAACNCTGCCCNCANTGCTGGTGAAGTTTATCGTGATCCATCAAATCCAA
ACAATTGGTCNTTTGNTGCTGTTGGTAAAGGNANGCAAGGCGCTCTTCCAGGTTTACNCC
AAATCNTTGGNTGNCAATAAATTTAATATTATTANTTAATTTAAAAAAAAAAAAAATTAA
AAAAAAAATAACAAACAAT
Length of 3' end seq. 489
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -