>SFH159 (SFH159Q) /CSM/SF/SFH1-C/SFH159Q.Seq.d/
XXXXXXXXXXAGAAATTGGTGAATTATCAGGTTTAACTAAAATTAATTTATCAGGTAATA
AATTAACAAGTATTCCAGCATCATTTGGTAATTTATCAGAATTACAAATTTGTGATTTAA
AGAGTAATGAAATTGCAGAATTACCAACTACATTGGATGGTCTTAAATCTTGTACTAAAA
TTGATCTTTCACATAATATGTTAACTGAATTACCATGGGAGTTTGGTGATTTAATTGGTC
TTACCATTCTTGATGTTGGTCATAATCCATTAACAATTCCACCAAATCCAATCGTTATGA
AAGGTACTGAATCTATCATTCAATGGTTAAAGAAGAATGAAAAAGAAGGTCGTAAAGGTA
AAGTTAGTGGTTTAGGTATTCAACAAGATAA

---EIGELSGLTKINLSGNKLTSIPASFGNLSELQICDLKSNEIAELPTTLDGLKSCTKI
DLSHNMLTELPWEFGDLIGLTILDVGHNPLTIPPNPIVMKGTESIIQWLKKNEKEGRKGK
VSGLGIQQD

Frame A:
---EIGELSGLTKINLSGNKLTSIPASFGNLSELQICDLKSNEIAELPTTLDGLKSCTKI
DLSHNMLTELPWEFGDLIGLTILDVGHNPLTIPPNPIVMKGTESIIQWLKKNEKEGRKGK
VSGLGIQQD


Frame B:
---klvnyqv*lkliyqvin*qvfqhhlviyqnykfvi*rvmklqnyqlhwmvlnlvlkl
ifhiic*lnyhgslvi*lvlpflmlviih*qfhqiqsl*kvlnlsfng*rrmkkkvvkvk
lvv*vfnki


Frame C:
---nw*iirfn*n*fir**inkyssiiw*firitnl*fke**ncritnyigws*ily*n*
sft*yvn*itmgvw*fnwsyhs*cws*sinnstksnryery*iyhsmvkee*krrs*r*s
*wfrystr*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM192 (SSM192Q) /CSM/SS/SSM1-D/SSM192Q.Seq.d/                        755   0.0
SLG759 (SLG759Q) /CSM/SL/SLG7-C/SLG759Q.Seq.d/                        755   0.0
SFH159 (SFH159Q) /CSM/SF/SFH1-C/SFH159Q.Seq.d/                        755   0.0
FCL-AC05 (FCL-AC05Q) /CSM/FCL/FCL-AC/FCL-AC05Q.Seq.d/                 755   0.0
AFF228 (AFF228Q) /CSM/AF/AFF2-B/AFF228Q.Seq.d/                        755   0.0
SFC254 (SFC254Q) /CSM/SF/SFC2-C/SFC254Q.Seq.d/                        741   0.0
AFG784 (AFG784Q) /CSM/AF/AFG7-D/AFG784Q.Seq.d/                        739   0.0
AFE785 (AFE785Q) /CSM/AF/AFE7-D/AFE785Q.Seq.d/                        739   0.0
AFD305 (AFD305Q) /CSM/AF/AFD3-A/AFD305Q.Seq.d/                        739   0.0
CFI831 (CFI831Q) /CSM/CF/CFI8-B/CFI831Q.Seq.d/                        737   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF200466|AF200466.1 Dictyostelium discoideum leucine-rich-repeat protein lrrA mRNA, complete cds.   755   0.0    1
CE361811|CE361811.1 tigr-gss-dog-17000361539068 Dog Library Canis familiaris genomic, genomic survey sequence.    32   0.062  3
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5.    34   0.081  8
AP006431|AP006431.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 5, clone:LjT38F20, TM0328.    48   0.089  1
AC112039|AC112039.3 Rattus norvegicus clone CH230-62L1, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces.    32   0.18   2
AC128006|AC128006.3 Rattus norvegicus clone CH230-260P11, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    32   0.19   2
AC115809|AC115809.3 Mus musculus clone RP23-416L3, WORKING DRAFT SEQUENCE, 42 ordered pieces.    46   0.35   1
CA884636|CA884636.1 B0112F09-5N NIA Mouse Neural Stem Cell (Differentiated) cDNA Library (Long) Mus musculus cDNA clone NIA:B0112F09 IMAGE:30095012 5', mRNA sequence.    46   0.35   1
CA883647|CA883647.1 B0104F04-5N NIA Mouse Neural Stem Cell (Differentiated) cDNA Library (Long) Mus musculus cDNA clone NIA:B0104F04 IMAGE:30094239 5', mRNA sequence.    46   0.35   1
CA883954|CA883954.1 B0106G09-5N NIA Mouse Neural Stem Cell (Differentiated) cDNA Library (Long) Mus musculus cDNA clone NIA:B0106G09 IMAGE:30094448 5', mRNA sequence.    46   0.35   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54AX5) RecName: Full=Leucine-rich repeat protein lrrA;  &AF200...   255   3e-67
CP000099_2371(CP000099|pid:none) Methanosarcina barkeri str. Fus...    92   5e-18
CP000099_3228(CP000099|pid:none) Methanosarcina barkeri str. Fus...    82   4e-15
CP001575_417(CP001575|pid:none) Micromonas sp. RCC299 chromosome...    80   2e-14
CP001334_52(CP001334|pid:none) Micromonas sp. RCC299 chromosome ...    79   6e-14
CP001574_690(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    78   8e-14
CP001326_585(CP001326|pid:none) Micromonas sp. RCC299 chromosome...    78   1e-13
CP000393_3313(CP000393|pid:none) Trichodesmium erythraeum IMS101...    77   1e-13
CP001332_194(CP001332|pid:none) Micromonas sp. RCC299 chromosome...    77   2e-13
CP001576_117(CP001576|pid:none) Micromonas sp. RCC299 chromosome...    77   2e-13

 psg: 0.75  gvh: 0.41  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.11  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for SFH159 is cyt

>SFH159Z.Seq
----------AGAAATTGGTGAATTATCAGGTTTAACTAAAATTAATTTATCAGGTAATA
AATTAACAAGTATTCCAGCATCATTTGGTAATTTATCAGAATTACAAATTTGTGATTTAA
AGAGTAATGAAATTGCAGAATTACCAACTACATTGGATGGTCTTAAATCTTGTACTAAAA
TTGATCTTTCACATAATATGTTAACTGAATTACCATGGGAGTTTGGTGATTTAATTGGTC
TTACCATTCTTGATGTTGGTCATAATCCATTAACAATTCCACCAAATCCAATCGTTATGA
AAGGTACTGAATCTATCATTCAATGGTTAAAGAAGAATGAAAAAGAAGGTCGTAAAGGTA
AAGTTAGTGGTTTAGGTATTCAACAAGATAA