SFH143 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFH143
Library	SF (Link to library)
Clone ID	SFH143 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16382-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFH1-B/SFH143Q.Seq.d/
Representative seq. ID	SFH143E (Link to Original site)
Representative DNA sequence	>SFH143 (SFH143Q) /CSM/SF/SFH1-B/SFH143Q.Seq.d/ AAACAACTCAAAAGATTTTAATTATATTTTAATATTAAATAAATAAACAAATAAAAAAAA AAATAAAAAATGGATGGTGAAGATGTTCAAGCTTTAGTTATTGATAATGGTTCAGGTATG TGTAAAGCTGGTTTTGCTGGTGATGATGCTCCACGTGCTGTTTTCCCATCAATTGTTGGT CGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAGGATTCATATGTCGGTGAT GAAGCTCAATCAAAAAGAGGTATTTTAACACTTAAGTATCCAATTGAACATGGTATTGTC ACCAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTTTATAATGAACTTCGTGTT GCTCCAGAGGAACATCCAGTTCGCTTAACTGAAGCTCCATTAAATCCAAAAGCAAATAGA GAGAAAATGACTCAAATCATGTTTGAANCTTTCAACACTCCAGCAATGTATGTTGCCATT CAAGCTGTATTATCACTCTATGCCTCTGGTCGTACCACTGGTATCGTTATGGATTCAGGT GATGGTGTTTCCCATACTGTACCAATTTACGAAGGTTATGCATTACCACATGCTATTTTA CGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAACGT GGTTACTCATTCACAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAAGAGAAATTA GCATACGTTGCATTGGATTTTGAAGCTGAAATGCAAACTGCAGCCTCATCATCTGCATTA CAGAAATCATATGAATTACCAGATGGTCAAGTTATTACAATTGGTAATGAACGTTTCCGT TGTCCAGAAGCACTTTTCCAACCATCATTCTTGGGTATGGAGTCTGCTGGTATTCATGAA ACAACCTATAATTCAATCATGAAATGTGATGTTGATATTCGTAAAGATTTATATGGTAAT GTTGTATTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAATAAAGAA TTAACTGCACTTGCACCATCAACAATGAAAATTAAAATTATTGCACCACCAGAACGTAAA TACTCTGTATGGATTGGTGGTTCAATTTTAGCTTCACTCTCAACTTTCCAACAAATGGGA TTTCAAAAGAAGAATATGAGAATCCGGTCCATCAATGTTCACAGAAAA
sequence update	2001. 6. 9
Translated Amino Acid sequence	kqlkrflyfnikinkkkkKMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVG RPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV APEEHPVRLTEAPLNPKANREKMTQIMFEXFNTPAMYVAIQAVLSLYASGRTTGIVMDSG DGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKL AYVALDFEAEMQTAASSSALQKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHE TTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERK YSVWIGGSILASLSTFQQMGFQKKNMRIRSINVHRK
Translated Amino Acid sequence (All Frames)	Frame A: kqlkrflyfnikinkkkkKMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVG RPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV APEEHPVRLTEAPLNPKANREKMTQIMFEXFNTPAMYVAIQAVLSLYASGRTTGIVMDSG DGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKL AYVALDFEAEMQTAASSSALQKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHE TTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERK YSVWIGGSILASLSTFQQMGFQKKNMRIRSINVHRK Frame B: nnskdfnyililnktnkkknkkwmvkmfklllimvqvcvklvllvmmlhvlfshqllv vqdtlvlwlvwvkrihmsvmklnqkevfhlsiqlnmvlspigmiwkksgiilfimnfvl lqrniqfalklhiqkqierklksclxlstlqqcmlpfklyyhsmplvvplvslwiqv mvfpilyqftkvmhyhmlfyvilvvillit*kslnvvthsqqllkeksleilkrn* htlhwilklkcklqphhlhyrnhmnyqmvkllqlvmnvsvvqkhfsnhhswvwsllvfmk qpiiqsnvmlifvkiymvmlyyqvvqlcsqvlliviknlhlhhqqklkllhhqnvn tlyglvvqflhsqlsnkwdfkrriesgpsmfte Frame C: ttqkiliifyinkqikkkikngwrcssfsywfryvswfcwcstccfpincws skthwcygwygskgficrssikkryfntvsntwychqlgygknlasyfltscc srgtssslnssikskskrendsnhvxfqhssnvcchssciitlclwsyhwyrygfr* wcfpyctnlrrlcittcyftfrfswssylhdenlntwllihnnckrnrryreis ircigfsnancsliiciteiiitrwssyynwtfplsrstfptiilgygvcwysn nlfnhemcysrfiwcciirwynyvprycsyerinctctinnennycttrt*i lcmdwwfnfsftlnfptngiskeeyenpvhqcsqk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFH143 (SFH143Q) /CSM/SF/SFH1-B/SFH143Q.Seq.d/ 2210 0.0 SFD813 (SFD813Q) /CSM/SF/SFD8-A/SFD813Q.Seq.d/ 2173 0.0 SFL261 (SFL261Q) /CSM/SF/SFL2-C/SFL261Q.Seq.d/ 2169 0.0 SFD319 (SFD319Q) /CSM/SF/SFD3-A/SFD319Q.Seq.d/ 2169 0.0 CFC565 (CFC565Q) /CSM/CF/CFC5-C/CFC565Q.Seq.d/ 2169 0.0 SFG742 (SFG742Q) /CSM/SF/SFG7-B/SFG742Q.Seq.d/ 2167 0.0 AFI479 (AFI479Q) /CSM/AF/AFI4-D/AFI479Q.Seq.d/ 2167 0.0 AFG203 (AFG203Q) /CSM/AF/AFG2-A/AFG203Q.Seq.d/ 2165 0.0 CHD357 (CHD357Q) /CSM/CH/CHD3-C/CHD357Q.Seq.d/ 2155 0.0 VFI283 (VFI283Q) /CSM/VF/VFI2-D/VFI283Q.Seq.d/ 2153 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N X03283\|X03283.1 Dictyostelium discoideum gene for actin A3-S1. 1685 0.0 2 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 1618 0.0 18 AC116956\|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 1530 0.0 18 AC115577\|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 1522 0.0 20 X03282\|X03282.1 dictyostelium discoideum gene for actin A12. 1483 0.0 2 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1411 0.0 14 X03284\|X03284.1 Dictyostelium discoideum gene for actin A3-S2. 1388 0.0 2 M14146\|M14146.1 D.discoideum actin 15 gene, complete cds. 888 0.0 3 AC115579\|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 888 0.0 7 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 880 0.0 16
dna update	2004. 2.21
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa... 711 0.0 (Q553U6) RecName: Full=Putative actin-22; &AC116305_3(AC116305\|... 706 0.0 ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli... 704 0.0 B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum) 704 0.0 (P02576) RecName: Full=Actin, plasmodial isoform; &ATFY(A29044;... 704 0.0 X03282_1(X03282\|pid:none) dictyostelium discoideum gene for acti... 703 0.0 AY294152_1(AY294152\|pid:none) Mayorella sp. JJP-2003 actin mRNA,... 694 0.0 (P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1; 694 0.0 AY294154_1(AY294154\|pid:none) Thecamoeba similis actin mRNA, com... 691 0.0 AY294153_1(AY294153\|pid:none) Platyamoeba placida actin mRNA, pa... 689 0.0
protein update	2009. 7. 3
PSORT	psg: 0.75 gvh: 0.34 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: cytoplasmic 44.0 %: nuclear 4.0 %: cytoskeletal 4.0 %: mitochondrial 4.0 %: vesicles of secretory system >> prediction for SFH143 is cyt
5' end seq. ID	SFH143F
5' end seq.	>SFH143F.Seq AAACAACTCAAAAGATTTTAATTATATTTTAATATTAAATAAATAAACAAATAAAAAAAA AAATAAAAAATGGATGGTGAAGATGTTCAAGCTTTAGTTATTGATAATGGTTCAGGTATG TGTAAAGCTGGTTTTGCTGGTGATGATGCTCCACGTGCTGTTTTCCCATCAATTGTTGGT CGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAGGATTCATATGTCGGTGAT GAAGCTCAATCAAAAAGAGGTATTTTAACACTTAAGTATCCAATTGAACATGGTATTGTC ACCAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTTTATAATGAACTTCGTGTT GCTCCAGAGGAACATCCAGTTCGCTTAACTGAAGCTCCATTAAATCCAAAAGCAAATAGA GAGAAAATGACTCAAATCATGTTTGAAACTTTCAACACTCCAGCAATGTATGTTGCCATT CAAGCTGTATTATCACTCTATGCCTCTGGTCGTACC----------
Length of 5' end seq.	516
3' end seq. ID	SFH143Z
3' end seq.	>SFH143Z.Seq ----------TGACTCAAATCATGTTTGAACCTTTCAACACTCCAGCAATGTATGTTGCC ATTCAAGCTGTATTATCACTCTATGCCTCTGGTCGTACCACTGGTATCGTTATGGATTCA GGTGATGGTGTTTCCCATACTGTACCAATTTACGAAGGTTATGCATTACCACATGCTATT TTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAA CGTGGTTACTCATTCACAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAAGAGAAA TTAGCATACGTTGCATTGGATTTTGAAGCTGAAATGCAAACTGCAGCCTCATCATCTGCA TTACAGAAATCATATGAATTACCAGATGGTCAAGTTATTACAATTGGTAATGAACGTTTC CGTTGTCCAGAAGCACTTTTCCAACCATCATTCTTGGGTATGGAGTCTGCTGGTATTCAT GAAACAACCTATAATTCAATCATGAAATGTGATGTTGATATTCGTAAAGATTTATATGGT AATGTTGTATTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAATAAA GAATTAACTGCACTTGCACCATCAACAATGAAAATTAAAATTATTGCACCACCAGAACGT AAATACTCTGTATGGATTGGTGGTTCAATTTTAGCTTCACTCTCAACTTTCCAACAAATG GGATTTCAAAAGAAGAATATGAGAATCCGGTCCATCAATGTTCACAGAAAA
Length of 3' end seq.	761
Connected seq. ID	SFH143P
Connected seq.	>SFH143P.Seq AAACAACTCAAAAGATTTTAATTATATTTTAATATTAAATAAATAAACAAATAAAAAAAA AAATAAAAAATGGATGGTGAAGATGTTCAAGCTTTAGTTATTGATAATGGTTCAGGTATG TGTAAAGCTGGTTTTGCTGGTGATGATGCTCCACGTGCTGTTTTCCCATCAATTGTTGGT CGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAGGATTCATATGTCGGTGAT GAAGCTCAATCAAAAAGAGGTATTTTAACACTTAAGTATCCAATTGAACATGGTATTGTC ACCAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTTTATAATGAACTTCGTGTT GCTCCAGAGGAACATCCAGTTCGCTTAACTGAAGCTCCATTAAATCCAAAAGCAAATAGA GAGAAAATGACTCAAATCATGTTTGAAACTTTCAACACTCCAGCAATGTATGTTGCCATT CAAGCTGTATTATCACTCTATGCCTCTGGTCGTACC----------TGACTCAAATCATG TTTGAACCTTTCAACACTCCAGCAATGTATGTTGCCATTCAAGCTGTATTATCACTCTAT GCCTCTGGTCGTACCACTGGTATCGTTATGGATTCAGGTGATGGTGTTTCCCATACTGTA CCAATTTACGAAGGTTATGCATTACCACATGCTATTTTACGTTTAGATTTAGCTGGTCGT GATCTTACTGATTACATGATGAAAATCTTAACTGAACGTGGTTACTCATTCACAACAACT GCTGAAAGAGAAATCGTTAGAGATATTAAAGAGAAATTAGCATACGTTGCATTGGATTTT GAAGCTGAAATGCAAACTGCAGCCTCATCATCTGCATTACAGAAATCATATGAATTACCA GATGGTCAAGTTATTACAATTGGTAATGAACGTTTCCGTTGTCCAGAAGCACTTTTCCAA CCATCATTCTTGGGTATGGAGTCTGCTGGTATTCATGAAACAACCTATAATTCAATCATG AAATGTGATGTTGATATTCGTAAAGATTTATATGGTAATGTTGTATTATCAGGTGGTACA ACTATGTTCCCAGGTATTGCTGATCGTATGAATAAAGAATTAACTGCACTTGCACCATCA ACAATGAAAATTAAAATTATTGCACCACCAGAACGTAAATACTCTGTATGGATTGGTGGT TCAATTTTAGCTTCACTCTCAACTTTCCAACAAATGGGATTTCAAAAGAAGAATATGAGA ATCCGGTCCATCAATGTTCACAGAAAA
Length of connected seq.	1277
Full length Seq ID	SFH143E
Full length Seq.	>SFH143E.Seq AAACAACTCAAAAGATTTTAATTATATTTTAATATTAAATAAATAAACAAATAAAAAAAA AAATAAAAAATGGATGGTGAAGATGTTCAAGCTTTAGTTATTGATAATGGTTCAGGTATG TGTAAAGCTGGTTTTGCTGGTGATGATGCTCCACGTGCTGTTTTCCCATCAATTGTTGGT CGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAGGATTCATATGTCGGTGAT GAAGCTCAATCAAAAAGAGGTATTTTAACACTTAAGTATCCAATTGAACATGGTATTGTC ACCAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTTTATAATGAACTTCGTGTT GCTCCAGAGGAACATCCAGTTCGCTTAACTGAAGCTCCATTAAATCCAAAAGCAAATAGA GAGAAAATGACTCAAATCATGTTTGAANCTTTCAACACTCCAGCAATGTATGTTGCCATT CAAGCTGTATTATCACTCTATGCCTCTGGTCGTACCACTGGTATCGTTATGGATTCAGGT GATGGTGTTTCCCATACTGTACCAATTTACGAAGGTTATGCATTACCACATGCTATTTTA CGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAACGT GGTTACTCATTCACAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAAGAGAAATTA GCATACGTTGCATTGGATTTTGAAGCTGAAATGCAAACTGCAGCCTCATCATCTGCATTA CAGAAATCATATGAATTACCAGATGGTCAAGTTATTACAATTGGTAATGAACGTTTCCGT TGTCCAGAAGCACTTTTCCAACCATCATTCTTGGGTATGGAGTCTGCTGGTATTCATGAA ACAACCTATAATTCAATCATGAAATGTGATGTTGATATTCGTAAAGATTTATATGGTAAT GTTGTATTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAATAAAGAA TTAACTGCACTTGCACCATCAACAATGAAAATTAAAATTATTGCACCACCAGAACGTAAA TACTCTGTATGGATTGGTGGTTCAATTTTAGCTTCACTCTCAACTTTCCAACAAATGGGA TTTCAAAAGAAGAATATGAGAATCCGGTCCATCAATGTTCACAGAAAA
Length of full length seq.	1188

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas