SFH122
Library SF
(Link to library)
Clone ID SFH122
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16294-1
Original site URL
Representative seq. ID SFH122P
(Link to Original site)
Representative DNA sequence
>SFH122 (SFH122Q) /CSM/SF/SFH1-A/SFH122Q.Seq.d/
ATTTTATTTTACCAATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAG
TTAAAGAATTTAGTAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATA
TTGAAATTCCAAATCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAG
AAGAAGCAATTCAATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCAT
GTGAAATTAAAAGAATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCA
AAACTGAAAAAGTTAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCA
CTGATGCATGGGATGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCT
ATGGTCGTGGTGGTGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAG
CATTGCAAGAACAATCAATTCCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAG
AATCTGGTTCXXXXXXXXXXATCGTGCTGAAAATCAATTAACTGGTGAAGTCGATAAAAG
ATTACACGTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAAATGTGCTGAAATTTT
AGGCGAAACCATCTATGATGAATNTTCATGGTACAAAAATACCACTCCAGTCACTAAAGA
TTTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTGCATCACCGGTGCTGA
AGGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCACACCACCGTTAAAGT
TAGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAACTGTATTAAAAGAAAT
TTTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAATGGATAAATGTGCTTC
AGGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAA
TCTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTCCATCCCATTCATGAA
AATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTC
AAATGCTCATGGTCCAAATGAATTCTTAGATATTCCATTTGCCAAGAAATTATTAAGTTG
TGTATTATTATAGAGCTCATTCCAAGTTG
sequence update 2001. 6. 1
Translated Amino Acid sequence
FILPIDKIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTE
EAIQLLEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLT
DAWDEGLHPYKAVIKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVIIIEGSEE
SG---

---RAENQLTGEVDKRLHVEIPQHRLDQIAKCAEILGETIYDEXSWYKNTTPVTKDLTQL
MINKTWYPTICITGAEGIPHTSNAGNVMRTHTTVKVSVRLPPSFKAADASTVLKEIFETN
PPYGAEVTFKMDKCASGWDSPQTRPELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHD
RFNCQFIVTGLLGPGSNAHGPNEFLDIPFAKKLLSCVLL*ssfqv


Translated Amino Acid sequence (All Frames)
Frame A:
ilfyqlikln*ikch*ilkklknlvikhgmkifyqhfqnilkfqinhhymmqngqpmviq
kkqfny*rngs*hkvskvfhvklkelkd*hqlfsw*skqpklkklklyfymvtwinnhhs
lmhgmkdyihtkqssritnsmvvvvqmmviqhllqslqskhcknnqfhmivm*lslkvpk
nlv---

---ivlkin*lvksikdytlkfhniv*iksqnvlkf*akpsmmnxhgtkiplqslki*pn
**stklgiqlfaspvlkvfhtlqmlvms*eltpplklvfvyhhhskqlmhqly*kkfskl
ihhmvlklpskwinvlqvgihhkldqn*kkh*eklqifslakttytwvkvvpshs*kcym
tvsivnlsllvy*vqvqmlmvqmns*ifhlprny*vvyyyrahskl

Frame B:
fyftn**n*ik*nviky*ks*ri***smg*kyftntfkiy*nsksitii*crmgnqwlyr
rsnsiiremdlstryqryfm*n*kn*rintnyfhgsrsnqn*ks*nctfiwshg*tttth
*cmg*ritsiqsshqe*qtlwswwcr*wlfnicfnlcnqsiartinst*slcnyh*rfrr
iwf---

---sc*ksinw*sr*kitr*nsttsfrsnrkmc*nfrrnhl**xfmvqkyhssh*rfnpi
ddqqnlvsnylhhrc*rysthfkcw*chenshhr*s*csfttiiqss*cincikrnfrn*
stiwc*sylqng*mcfrlgfttn*trirksirrsfksflwqrprihg*rwfhpihenvt*
pfqlsiyrywfirsrfkcswsk*ilrysicqeiiklciiielips

Frame C:
FILPIDKIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTE
EAIQLLEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLT
DAWDEGLHPYKAVIKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVIIIEGSEE
SG---

---RAENQLTGEVDKRLHVEIPQHRLDQIAKCAEILGETIYDEXSWYKNTTPVTKDLTQL
MINKTWYPTICITGAEGIPHTSNAGNVMRTHTTVKVSVRLPPSFKAADASTVLKEIFETN
PPYGAEVTFKMDKCASGWDSPQTRPELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHD
RFNCQFIVTGLLGPGSNAHGPNEFLDIPFAKKLLSCVLL*ssfqv

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFH122 (SFH122Q) /CSM/SF/SFH1-A/SFH122Q.Seq.d/ 2371 0.0
CFG835 (CFG835Q) /CSM/CF/CFG8-B/CFG835Q.Seq.d/ 1281 0.0
AFB648 (AFB648Q) /CSM/AF/AFB6-B/AFB648Q.Seq.d/ 1281 0.0
SFL182 (SFL182Q) /CSM/SF/SFL1-D/SFL182Q.Seq.d/ 1269 0.0
AFJ819 (AFJ819Q) /CSM/AF/AFJ8-A/AFJ819Q.Seq.d/ 1267 0.0
VFI168 (VFI168Q) /CSM/VF/VFI1-C/VFI168Q.Seq.d/ 1261 0.0
SFI811 (SFI811Q) /CSM/SF/SFI8-A/SFI811Q.Seq.d/ 1261 0.0
SFI553 (SFI553Q) /CSM/SF/SFI5-C/SFI553Q.Seq.d/ 1261 0.0
SFG389 (SFG389Q) /CSM/SF/SFG3-D/SFG389Q.Seq.d/ 1261 0.0
CFJ404 (CFJ404Q) /CSM/CF/CFJ4-A/CFJ404Q.Seq.d/ 1261 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strainAX4, complete sequence. 34 2e-04 18
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 44 6e-04 19
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. 40 6e-04 11
AC101592|AC101592.1 Mus musculus clone RP23-197P18, LOW-PASS SEQUENCE SAMPLING. 42 7e-04 4
AL589844|AL589844.4 Human DNA sequence from clone RP11-436F21 on chromosome 9. 42 0.001 7
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 44 0.002 15
AC144499|AC144499.2 Pan troglodytes clone RP43-108D19, WORKING DRAFT SEQUENCE, 2 ordered pieces. 50 0.002 5
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 0.003 19
AE014844|AE014844.1 Plasmodium falciparum 3D7 chromosome 12, section 1 of 9 of the complete sequence. 48 0.003 12
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 30 0.006 16
dna update 2003.12.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM746676_157(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ... 202 1e-50
AM743169_1072(AM743169|pid:none) Stenotrophomonas maltophilia K2... 202 2e-50
AM039952_3097(AM039952|pid:none) Xanthomonas campestris pv. vesi... 200 7e-50
CP000113_526(CP000113|pid:none) Myxococcus xanthus DK 1622, comp... 200 7e-50
CP001111_978(CP001111|pid:none) Stenotrophomonas maltophilia R55... 199 2e-49
AE008923_2905(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 199 2e-49
BX571966_664(BX571966|pid:none) Burkholderia pseudomallei strain... 188 4e-46
DQ384330_1(DQ384330|pid:none) Hartmannella vermiformis succinyl-... 187 5e-46
CP000267_395(CP000267|pid:none) Rhodoferax ferrireducens T118, c... 185 2e-45
CP000441_1120(CP000441|pid:none) Burkholderia ambifaria AMMD chr... 185 3e-45
protein update 2009. 5.25
PSORT

psg: 0.70 gvh: 0.29 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 1.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

24.0 %: cytoplasmic
24.0 %: nuclear
20.0 %: plasma membrane
8.0 %: extracellular, including cell wall
8.0 %: Golgi
8.0 %: vesicles of secretory system
4.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for SFH122 is cyt

5' end seq. ID SFH122F
5' end seq.
>SFH122F.Seq
ATTTTATTTTACCAATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAG
TTAAAGAATTTAGTAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATA
TTGAAATTCCAAATCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAG
AAGAAGCAATTCAATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCAT
GTGAAATTAAAAGAATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCA
AAACTGAAAAAGTTAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCA
CTGATGCATGGGATGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCT
ATGGTCGTGGTGGTGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAG
CATTGCAAGAACAATCAATTCCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAG
AATCTGGTTC----------
Length of 5' end seq. 550
3' end seq. ID SFH122Z
3' end seq.
>SFH122Z.Seq
----------ATCGTGCTGAAAATCAATTAACTGGTGAAGTCGATAAAAGATTACACGTT
GAAATTCCACAACATCGTTTAGATCAAATCGCAAAATGTGCTGAAATTTTAGGCGAAACC
ATCTATGATGAATNTTCATGGTACAAAAATACCACTCCAGTCACTAAAGATTTAACCCAA
TTGATGATCAACAAAACTTGGTATCCAACTATTTGCATCACCGGTGCTGAAGGTATTCCA
CACACTTCAAATGCTGGTAATGTCATGAGAACTCACACCACCGTTAAAGTTAGTGTTCGT
TTACCACCATCATTCAAAGCAGCTGATGCATCAACTGTATTAAAAGAAATTTTCGAAACT
AATCCACCATATGGTGCTGAAGTTACCTTCAAAATGGATAAATGTGCTTCAGGTTGGGAT
TCACCACAAACTAGACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTT
GGCAAAGACCACGTATACATGGGTGAAGGTGGTTCCATCCCATTCATGAAAATGTTACAT
GACCGTTTCAATTGTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTCAAATGCTCAT
GGTCCAAATGAATTCTTAGATATTCCATTTGCCAAGAAATTATTAAGTTGTGTATTATTA
TAGAGCTCATTCCAAGTTG
Length of 3' end seq. 669
Connected seq. ID SFH122P
Connected seq.
>SFH122P.Seq
ATTTTATTTTACCAATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAG
TTAAAGAATTTAGTAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATA
TTGAAATTCCAAATCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAG
AAGAAGCAATTCAATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCAT
GTGAAATTAAAAGAATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCA
AAACTGAAAAAGTTAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCA
CTGATGCATGGGATGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCT
ATGGTCGTGGTGGTGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAG
CATTGCAAGAACAATCAATTCCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAG
AATCTGGTTC----------ATCGTGCTGAAAATCAATTAACTGGTGAAGTCGATAAAAG
ATTACACGTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAAATGTGCTGAAATTTT
AGGCGAAACCATCTATGATGAATNTTCATGGTACAAAAATACCACTCCAGTCACTAAAGA
TTTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTGCATCACCGGTGCTGA
AGGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCACACCACCGTTAAAGT
TAGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAACTGTATTAAAAGAAAT
TTTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAATGGATAAATGTGCTTC
AGGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAA
TCTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTCCATCCCATTCATGAA
AATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTC
AAATGCTCATGGTCCAAATGAATTCTTAGATATTCCATTTGCCAAGAAATTATTAAGTTG
TGTATTATTATAGAGCTCATTCCAAGTTG
Length of connected seq. 1219
Full length Seq ID -
Full length Seq. -
Length of full length seq. -