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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFH119
Library SF
(Link to library)
Clone ID SFH119
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13482-1
Original site URL
Representative seq. ID SFH119F
(Link to Original site)
Representative DNA sequence 
>SFH119 (SFH119Q) /CSM/SF/SFH1-A/SFH119Q.Seq.d/
CAAATATTAAATTTGGACAAAAAAATATTAGACAATTCTNAACCAATACAAATTGGTGGG
CANATGTTCAAAAGGGACCAGAAGATCCAATTTTAGGTGTTAGCATTGCTTACAATAAAG
ATACCTCACCATCAAAGATCAATTTAGGTGTTGGTGCATACAGAGATGAAAATGGTAAAC
CATACGTATTGGATTGCGTAAAGAGAGCAGACAAAAAGATCTATGAAGCCAACGTCGATC
ACGAATACGCACCAATTGTTGGTGTTGCAGCATTCAATCAATTGGCAGCXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
NIKFGQKNIRQFXTNTNWWAXVQKGPEDPILGVSIAYNKDTSPSKINLGVGAYRDENGKP
YVLDCVKRADKKIYEANVDHEYAPIVGVAAFNQLA---
Translated Amino Acid sequence (All Frames) 
Frame A:
qilnldkkildnsxpiqiggxmfkrdqkiqf*vlalltikiphhqrsi*vlvhtemkmvn
htywia*reqtkrsmkptsitnthqllvlqhsinwq---


Frame B:
ky*iwtkky*tilnqyklvgxcskgtrrsnfrc*hclq*ryltikdqfrcwciqr*kw*t
iriglrkesrqkdl*sqrrsrirtncwccsiqsig---


Frame C:
NIKFGQKNIRQFXTNTNWWAXVQKGPEDPILGVSIAYNKDTSPSKINLGVGAYRDENGKP
YVLDCVKRADKKIYEANVDHEYAPIVGVAAFNQLA---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH219 (SFH219Q) /CSM/SF/SFH2-A/SFH219Q.Seq.d/                        519   e-147
SFH119 (SFH119Q) /CSM/SF/SFH1-A/SFH119Q.Seq.d/                        519   e-147
VSI466 (VSI466Q) /CSM/VS/VSI4-C/VSI466Q.Seq.d/                        511   e-144
VFL403 (VFL403Q) /CSM/VF/VFL4-A/VFL403Q.Seq.d/                        511   e-144
VFG148 (VFG148Q) /CSM/VF/VFG1-B/VFG148Q.Seq.d/                        511   e-144
SLE757 (SLE757Q) /CSM/SL/SLE7-C/SLE757Q.Seq.d/                        511   e-144
SFC742 (SFC742Q) /CSM/SF/SFC7-B/SFC742Q.Seq.d/                        511   e-144
AFN850 (AFN850Q) /CSM/AF/AFN8-C/AFN850Q.Seq.d/                        511   e-144
AFM425 (AFM425Q) /CSM/AF/AFM4-B/AFM425Q.Seq.d/                        511   e-144
AFM423 (AFM423Q) /CSM/AF/AFM4-A/AFM423Q.Seq.d/                        511   e-144
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AU001466|AU001466.1 Bombyx mori cDNA, clone fbm0460f.              62   4e-06  1
AL116628|AL116628.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    46   0.27   1
AL116629|AL116629.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    46   0.27   1
AL671886|AL671886.18 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-358A12.    34   0.53   2
AL805978|AL805978.10 Mouse DNA sequence from clone RP23-344I3 on chromosome X.    34   0.54   2
AC139601|AC139601.7 Medicago truncatula clone mth2-8h11, WORKING DRAFT SEQUENCE.    44   1.0    1
BQ622481|BQ622481.1 fch1c.pk002.h21 Conidiobolus cornatus ARSEF 512 Conidiobolus coronatus cDNA, mRNA sequence.    44   1.0    1
AL356913|AL356913.15 Human DNA sequence from clone RP4-759M20 on chromosome 1p31.2-32.1.    42   4.1    1
AC024392|AC024392.2 Homo sapiens clone RP11-472G16, LOW-PASS SEQUENCE SAMPLING.    42   4.1    1
AL031135|AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII  project).    42   4.1    1
dna update 2003.12.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55F21) RecName: Full=Aspartate aminotransferase, mitochondrial...   196   3e-49
BT076126_1(BT076126|pid:none) Caligus rogercresseyi clone crog-e...   104   8e-22
BT075809_1(BT075809|pid:none) Caligus rogercresseyi clone crog-e...   102   3e-21
AF395206_1(AF395206|pid:none) Aedes aegypti aspartate aminotrans...   102   4e-21
(P08907) RecName: Full=Aspartate aminotransferase, mitochondrial...   102   5e-21
AB098917_1(AB098917|pid:none) Bos taurus mRNA for similar to asp...   101   7e-21
BT045219_1(BT045219|pid:none) Salmo salar clone ssal-rgf-515-180...   101   7e-21
(P12344) RecName: Full=Aspartate aminotransferase, mitochondrial...   101   7e-21
(P00508) RecName: Full=Aspartate aminotransferase, mitochondrial...   100   3e-20
(P00505) RecName: Full=Aspartate aminotransferase, mitochondrial...    99   4e-20
protein update 2009. 5.25
PSORT 

 psg: 0.76  gvh: 0.29  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SFH119 is cyt
5' end seq. ID SFH119F
5' end seq. 
>SFH119F.Seq
CAAATATTAAATTTGGACAAAAAAATATTAGACAATTCTNAACCAATACAAATTGGTGGG
CANATGTTCAAAAGGGACCAGAAGATCCAATTTTAGGTGTTAGCATTGCTTACAATAAAG
ATACCTCACCATCAAAGATCAATTTAGGTGTTGGTGCATACAGAGATGAAAATGGTAAAC
CATACGTATTGGATTGCGTAAAGAGAGCAGACAAAAAGATCTATGAAGCCAACGTCGATC
ACGAATACGCACCAATTGTTGGTGTTGCAGCATTCAATCAATTGGCAGC----------
Length of 5' end seq. 289
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -