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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFH109
Library SF
(Link to library)
Clone ID SFH109
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1
Original site URL
Representative seq. ID SFH109Z
(Link to Original site)
Representative DNA sequence 
>SFH109 (SFH109Q) /CSM/SF/SFH1-A/SFH109Q.Seq.d/
XXXXXXXXXXAAGTTGGTTTGGGTCAACAAAATCAACAACAAAATCAACAAAATCAACAA
CAGCAACAAAATCANCAAGAAAATCAACAACAAAAAAATCAACAACAAGCTCAACAAAAC
CANCAACAAAATCAACAAGCTCAACAAGCTCAACAAGCTCAACAAGCTCAACAAAATCAA
CAAGCTCAACAAAATCAACAAGCTCAACAAAATCAACAAGCTCAACAAAATCAACAAGCT
CAACAAAATCAACAAGCTCAACAAAATCAACAAGCTCAACAAAATCAACAAGCTCAACAA
AATCAACAAGCTCAACAAAATCCACAAGCTCAACAAGCTCAACAAAACCAACAAGCTCAA
CAAAATCAACAAGAAAAAAACAACAATAAATCAATTCTAAGTATTGAAATTGGAAATAAT
GCTGCACAAAAACAAAGTGAAAACTCTAAACAATCTGCTGCAATTCAAACTGATGTAAAC
GTTGCCAACAAACAAAACCAAGAAAACAAAGCTAATCAAGAAAACAAAGCTAATCAAGAA
AACAAAGATAATCAAGAAAATGGTGATAATCAAGTGAATGATGCTAATCAAGAACAAAAT
CAAAANAAAACAATGTTAATAAGAAAG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---VGLGQQNQQQNQQNQQQQQNXQENQQQKNQQQAQQNXQQNQQAQQAQQAQQAQQNQQ
AQQNQQAQQNQQAQQNQQAQQNQQAQQNQQAQQNQQAQQNQQAQQNPQAQQAQQNQQAQQ
NQQEKNNNKSILSIEIGNNAAQKQSENSKQSAAIQTDVNVANKQNQENKANQENKANQEN
KDNQENGDNQVNDANQEQNQXKTMLIRK
Translated Amino Acid sequence (All Frames) 
Frame A:
---swfgstksttkstksttatksxrksttkksttsstkpxtkstsstsstsstsstkst
sstkstsstkstsstkstsstkstsstkstsstkstsstkstsstkstsstsstkptsst
kstrkkqq*insky*nwk*cctktk*kl*ticcnsn*ckrcqqtkprkqs*srkqs*srk
qr*srkw**sse*c*srtkskxnnvnkk


Frame B:
---VGLGQQNQQQNQQNQQQQQNXQENQQQKNQQQAQQNXQQNQQAQQAQQAQQAQQNQQ
AQQNQQAQQNQQAQQNQQAQQNQQAQQNQQAQQNQQAQQNQQAQQNPQAQQAQQNQQAQQ
NQQEKNNNKSILSIEIGNNAAQKQSENSKQSAAIQTDVNVANKQNQENKANQENKANQEN
KDNQENGDNQVNDANQEQNQXKTMLIRK


Frame C:
---lvwvnkinnkinkinnsnkixkkinnkkinnklnktxnkinklnklnklnklnkink
lnkinklnkinklnkinklnkinklnkinklnkinklnkinklnkihklnklnktnklnk
inkkkttinqf*vlkleimlhknkvktlnnllqfklm*tlptnktkktklikktklikkt
kiikkmviik*mmliknkikxkqc**e
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH109 (SFH109Q) /CSM/SF/SFH1-A/SFH109Q.Seq.d/                        448   e-125
CHD296 (CHD296Q) /CSM/CH/CHD2-D/CHD296Q.Seq.d/                        442   e-123
AFI696 (AFI696Q) /CSM/AF/AFI6-D/AFI696Q.Seq.d/                        442   e-123
SFE617 (SFE617Q) /CSM/SF/SFE6-A/SFE617Q.Seq.d/                        436   e-121
SFC142 (SFC142Q) /CSM/SF/SFC1-B/SFC142Q.Seq.d/                        436   e-121
CHR780 (CHR780Q) /CSM/CH/CHR7-D/CHR780Q.Seq.d/                        436   e-121
CHR219 (CHR219Q) /CSM/CH/CHR2-A/CHR219Q.Seq.d/                        436   e-121
CHD705 (CHD705Q) /CSM/CH/CHD7-A/CHD705Q.Seq.d/                        436   e-121
CFK181 (CFK181Q) /CSM/CF/CFK1-D/CFK181Q.Seq.d/                        436   e-121
CFI529 (CFI529Q) /CSM/CF/CFI5-B/CFI529Q.Seq.d/                        436   e-121
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strainAX4, complete sequence.   442   e-124  3
BX510306|BX510306.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-195F19.    48   0.022  3
AC099090|AC099090.6 Rattus norvegicus clone CH230-195N10, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42   0.082  3
BX663608|BX663608.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-223I19.    40   0.097  4
BF682181|BF682181.1 602117601T1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone IMAGE:3468576 3', mRNA sequence.    38   0.11   2
CF390442|CF390442.1 RTDR2_19_F09.g1_A021 Loblolly pine roots recovering from drought DR2 Pinus taeda cDNA clone RTDR2_19_F09_A021 5', mRNA sequence.    34   0.11   2
BX511108|BX511108.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    48   0.15   1
BX664626|BX664626.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-266O3.    48   0.15   1
BX322581|BX322581.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-256F23.    48   0.15   1
AC101501|AC101501.1 Mus musculus clone RP23-189H23, LOW-PASS SEQUENCE SAMPLING.    48   0.15   1
dna update 2003.12.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    82   9e-15
protein update 2009. 1.10
PSORT 

 psg: 0.65  gvh: 0.27  alm: 0.66  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: cytoskeletal

>> prediction for SFH109 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFH109Z
3' end seq. 
>SFH109Z.Seq
----------AAGTTGGTTTGGGTCAACAAAATCAACAACAAAATCAACAAAATCAACAA
CAGCAACAAAATCANCAAGAAAATCAACAACAAAAAAATCAACAACAAGCTCAACAAAAC
CANCAACAAAATCAACAAGCTCAACAAGCTCAACAAGCTCAACAAGCTCAACAAAATCAA
CAAGCTCAACAAAATCAACAAGCTCAACAAAATCAACAAGCTCAACAAAATCAACAAGCT
CAACAAAATCAACAAGCTCAACAAAATCAACAAGCTCAACAAAATCAACAAGCTCAACAA
AATCAACAAGCTCAACAAAATCCACAAGCTCAACAAGCTCAACAAAACCAACAAGCTCAA
CAAAATCAACAAGAAAAAAACAACAATAAATCAATTCTAAGTATTGAAATTGGAAATAAT
GCTGCACAAAAACAAAGTGAAAACTCTAAACAATCTGCTGCAATTCAAACTGATGTAAAC
GTTGCCAACAAACAAAACCAAGAAAACAAAGCTAATCAAGAAAACAAAGCTAATCAAGAA
AACAAAGATAATCAAGAAAATGGTGATAATCAAGTGAATGATGCTAATCAAGAACAAAAT
CAAAANAAAACAATGTTAATAAGAAAG
Length of 3' end seq. 617
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -