>SFH104 (SFH104Q) /CSM/SF/SFH1-A/SFH104Q.Seq.d/
TCTGCAACTGAGGGAGGCGGTGAAACTATACCAGAATCATTGGCTGTAAGTGATAAAATG
ATGGTAGATGGTTTACCAATGATTGATATGAATTCAAGTATTCCACCTGGATTTAGTACA
GCTGATACATTGAAACAACCAACCATTTTAAATGCAGATTTAAAACCATATCAATTAAAA
GGTATGACATGGATCGTAAATCTTTATGATCAAGGTATCAATGGTATATTGGCAGATGAA
ATGGGTTTGGGTAAAACCATTCAATCGATTGCAGTCCTAGCTCATTTGGCAGAGGAAAAG
AATATTTGGGGACCATTTTTAATTGTTACACCAAAATCAACACTTCACAATTGGAAGAAT
GAATTTGCAAAGTTTGTACCAGCATTCAAGGTAATTCCTTATTGGGGTACACAACAACAA
CGTACTACCATTAGAAAATATTGGAATCCAAAGAAATTGTATCATAGAAATTCACCATTC
CACGTTTTAATCACATCGTACAATGTGATAGTACGTGATGAAAAGTATTTCCATAGATTA
CGTTGGCAATATATGGTATTGGATGAAGCTCATGCTATCAAGAGTTCAGCAAGTAATCGT
TGGAAAACTCTAATGAGTTTTAAXXXXXXXXXX

SATEGGGETIPESLAVSDKMMVDGLPMIDMNSSIPPGFSTADTLKQPTILNADLKPYQLK
GMTWIVNLYDQGINGILADEMGLGKTIQSIAVLAHLAEEKNIWGPFLIVTPKSTLHNWKN
EFAKFVPAFKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHVLITSYNVIVRDEKYFHRL
RWQYMVLDEAHAIKSSASNRWKTLMSF---

Frame A:
SATEGGGETIPESLAVSDKMMVDGLPMIDMNSSIPPGFSTADTLKQPTILNADLKPYQLK
GMTWIVNLYDQGINGILADEMGLGKTIQSIAVLAHLAEEKNIWGPFLIVTPKSTLHNWKN
EFAKFVPAFKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHVLITSYNVIVRDEKYFHRL
RWQYMVLDEAHAIKSSASNRWKTLMSF---


Frame B:
lqlreavklyqnhwl*vik*w*mvyq*li*iqvfhldlvqlih*nnqpf*mqi*nhin*k
v*hgs*ifmikvsmvywqmkwvwvkpfnrlqs*liwqrkrifgdhf*llhqnqhftigrm
nlqslyqhsr*fligvhnnnvlplenigiqrnciieihhstf*shrtm**yvmksisidy
vgniwywmklmlsrvqqvivgkl**vl---


Frame C:
cn*grr*nytriigck**ndgrwftnd*yefkystwi*ys*yiettnhfkcrfktisikr
ydmdrksl*sryqwyigr*ngfg*nhsidcspssfgrgkeylgtifncytkintsqlee*
ickvctsiqgnsllgyttttyyh*kileskeivs*kftiprfnhivqcdst**kvfp*it
laiygig*sscyqefsk*slensnef---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH104 (SFH104Q) /CSM/SF/SFH1-A/SFH104Q.Seq.d/                       1235   0.0
CHI260 (CHI260Q) /CSM/CH/CHI2-C/CHI260Q.Seq.d/                       1187   0.0
SHB273 (SHB273Q) /CSM/SH/SHB2-D/SHB273Q.Seq.d/                       1164   0.0
SHA495 (SHA495Q) /CSM/SH/SHA4-D/SHA495Q.Seq.d/                       1047   0.0
AHA550 (AHA550Q) /CSM/AH/AHA5-C/AHA550Q.Seq.d/                       1043   0.0
SHH674 (SHH674Q) /CSM/SH/SHH6-D/SHH674Q.Seq.d/                       1041   0.0
AHG788 (AHG788Q) /CSM/AH/AHG7-D/AHG788Q.Seq.d/                       1039   0.0
VHC814 (VHC814Q) /CSM/VH/VHC8-A/VHC814Q.Seq.d/                       1021   0.0
AHP238 (AHP238Q) /CSM/AH/AHP2-B/AHP238Q.Seq.d/                        605   e-172
AHF249 (AHF249Q) /CSM/AH/AHF2-C/AHF249Q.Seq.d/                        601   e-171

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AZ924749|AZ924749.1 4906.id55e03.s1 Saccharomyces mikatae IFO 1815 Saccharomycesmikatae genomic clone 4906.id55e03.s1, genomic survey sequence.    88   2e-13  1
CD153648|CD153648.1 ML1-0034G-A136-F06-U.B ML1-0034 Schistosoma mansoni cDNA clone ML1-0034G-A136-F06.B, mRNA sequence.    52   7e-10  3
AC093499|AC093499.2 Drosophila melanogaster 3L BAC RP98-18K24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.    74   3e-09  1
BT009972|BT009972.1 Drosophila melanogaster RE61274 full insert cDNA.    74   3e-09  1
AE003529|AE003529.3 Drosophila melanogaster chromosome 3L, section 56 of 83 of the complete sequence.    74   3e-09  1
AC014424|AC014424.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    74   3e-09  1
AY095048|AY095048.1 Drosophila melanogaster LD36356 full insert cDNA.    74   3e-09  1
AA264495|AA264495.1 LD08257.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD08257 5prime, mRNA sequence.    74   3e-09  1
M85049|M85049.1 Drosophila melanogaster brahma protein mRNA, complete cds.    74   3e-09  1
AX489234|AX489234.1 Sequence 6534 from Patent WO02053728.          70   4e-08  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL929049_3(AL929049|pid:none) Zebrafish DNA sequence from clone ...   252   5e-66
AL844862_2(AL844862|pid:none) Mouse DNA sequence from clone RP23...   249   3e-65
BC059235_1(BC059235|pid:none) Mus musculus INO80 complex homolog...   249   4e-65
AB033085_1(AB033085|pid:none) Homo sapiens mRNA for KIAA1259 pro...   249   6e-65
(Q9ULG1) RecName: Full=Putative DNA helicase INO80 complex homol...   249   6e-65
(P53115) RecName: Full=Putative DNA helicase INO80;          EC=...   246   5e-64
(A7TJI3) RecName: Full=Putative DNA helicase INO80;          EC=...   243   3e-63
(Q4PGL2) RecName: Full=Putative DNA helicase INO80;          EC=...   242   5e-63
(Q4IL82) RecName: Full=Putative DNA helicase INO80;          EC=...   241   2e-62
(Q0UG82) RecName: Full=Putative DNA helicase INO80;          EC=...   240   2e-62

 psg: 0.75  gvh: 0.31  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SFH104 is cyt

>SFH104F.Seq
TCTGCAACTGAGGGAGGCGGTGAAACTATACCAGAATCATTGGCTGTAAGTGATAAAATG
ATGGTAGATGGTTTACCAATGATTGATATGAATTCAAGTATTCCACCTGGATTTAGTACA
GCTGATACATTGAAACAACCAACCATTTTAAATGCAGATTTAAAACCATATCAATTAAAA
GGTATGACATGGATCGTAAATCTTTATGATCAAGGTATCAATGGTATATTGGCAGATGAA
ATGGGTTTGGGTAAAACCATTCAATCGATTGCAGTCCTAGCTCATTTGGCAGAGGAAAAG
AATATTTGGGGACCATTTTTAATTGTTACACCAAAATCAACACTTCACAATTGGAAGAAT
GAATTTGCAAAGTTTGTACCAGCATTCAAGGTAATTCCTTATTGGGGTACACAACAACAA
CGTACTACCATTAGAAAATATTGGAATCCAAAGAAATTGTATCATAGAAATTCACCATTC
CACGTTTTAATCACATCGTACAATGTGATAGTACGTGATGAAAAGTATTTCCATAGATTA
CGTTGGCAATATATGGTATTGGATGAAGCTCATGCTATCAAGAGTTCAGCAAGTAATCGT
TGGAAAACTCTAATGAGTTTTAA----------