SFG824 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFG824
Library	SF (Link to library)
Clone ID	SFG824 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U10808-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFG8-A/SFG824Q.Seq.d/
Representative seq. ID	SFG824P (Link to Original site)
Representative DNA sequence	>SFG824 (SFG824Q) /CSM/SF/SFG8-A/SFG824Q.Seq.d/ AATTTAATTCATATCATAAAAATTTATTTTTATAAAATCTATAGTAACACTAATTTATAA TAATCAAATTGTGGTCTTATTTTAATATTTTTTTTAATAAATTAAGATGATGAAGCCAGA TTTAAATAGTCCATTACCACAATCACCACAACTTCAATCATTTGGAAGTAGATCATCAGA TCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGCACCAAA TGAAACAGTAAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATTGTTTAC CCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAATCCACCACCAGC TGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAGAACTTCAGAACT CGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTTTAGGTACAACAATGGGTTGTAC TGGTCCAAAGAGTGTTATTGAAGTTAGAAGTGAAAAAACTTTCTTAGATTTAAGTGTTCA XXXXXXXXXXTATTCATTTCAAATGTAGATAATCTTGGTGCTGTTGTTGATTTTAACATT TTAGAAGCAATGGATAAAAATAAAGTTGAATATATTATGGAAGTTACAAATAAAACTAGA GCAGATGTTAAAGGTGGTACATTAATTCAATATGAAGGTAAAGCTAAATTATTGGAGATT GCACAAGTACCATCATCAAAGGTTGAAGAATTTAAATCAATAAAGAAATTCAAAATTTTT AATACCAATAACATTTGGGTCAATCTCAAAGCAATGGATCGTATTTTGAAACAAAATCTT TTGGATGATATGGATATCATTATCAATCCAAAGGTTGCTGATGGTAAAAATATCATTCAA TTGGAGATTGCTGCTGGTGCTGCAATTGAATTCTTTAACAATGCAAGAGGTGTCAATGTA CCAAGATCAAGATTTTTACCAGTGAAATCAACCTCTGATCTCTTTATCGTTCAATCAAAT CTCTACTCACTCGAGAAGGGTGTTTTGGTAATGAACAAGAATAGACCATTCACCACAGTT CCCTTGGTTAAATTGGGTGATAACTTTAAAAAGGTTTCAGATTATCAAGCTCGTATCAAA GGTATTCCAGATATTTTGGAATTGGATCAACTCACCGTTTCTGGTGATATAACCTTTGGT CCAAATATGGTCCTCAAAGGCACTGTTATCATTGTTGCTAATCATGGTTCAAGAATTGAT ATTCCGAAGGTTCAGAATTNAAAATAAAGAGTTAGGGNATTTACATTGGGGCTTGTAAAT AAATAAA
sequence update	2001. 6. 1
Translated Amino Acid sequence	ifiskfifiksivtliynnqivvlfyffIKMMKPDLNSPLPQSPQLQSFGSRSSD LATEDLFLKKLEAISQTAPNETVKNEFLNKEIPSINKLFTRFLKNRKKVIDWDKINPPPA DMVLNYKDLPAITEQRTSELASKLAVLKLNGGLGTTMGCTGPKSVIEVRSEKTFLDLSV- -- ---FISNVDNLGAVVDFNILEAMDKNKVEYIMEVTNKTRADVKGGTLIQYEGKAKLLEIA QVPSSKVEEFKSIKKFKIFNTNNIWVNLKAMDRILKQNLLDDMDIIINPKVADGKNIIQL EIAAGAAIEFFNNARGVNVPRSRFLPVKSTSDLFIVQSNLYSLEKGVLVMNKNRPFTTVP LVKLGDNFKKVSDYQARIKGIPDILELDQLTVSGDITFGPNMVLKGTVIIVANHGSRIDI PKVQNXKrvrxftlglvnk*
Translated Amino Acid sequence (All Frames)	Frame A: nlihiikiyfykiysntnl*sncglilifflinddearfksittitttsiiwkiir scnrgfifeeigsnltnctknskeifkqrntiyqqivypflkekesnrlgnqstts ygfklrftsnhtknfrtrfkigcfeikwrfrynnglywskecyskknflrfkcs --- ---ysfqmiilvllliltfkqwikiklnilwklqikleqmlkvvhfnmkvklnywrl hkyhhqrlknlnqrnskflipitfgsiskqwivfnkifwmiwislsiqrllmvkisfn wrlllvlqlnsltmqevsmyqdqdfyqnqplislsfnqisthsrrvfw*tridhspqf pwlnwvitlkrfqiiklvskvfqifwnwinspflviplvqiwsskallslllimvqeli frrfrixnkelgxlhwglink Frame B: ifiskfifiksivtliynnqivvlfyff*IKMMKPDLNSPLPQSPQLQSFGSRSSD LATEDLFLKKLEAISQTAPNETVKNEFLNKEIPSINKLFTRFLKNRKKVIDWDKINPPPA DMVLNYKDLPAITEQRTSELASKLAVLKLNGGLGTTMGCTGPKSVIEVRSEKTFLDLSV- -- ---ihfkcrswcccfhfrsngksiyygsyknsrcrwyinsirsiigdc tstiikgriinkeiqnfyqhlgqsqsngsyfetksfgygyhyqskgcwkyhsi gdccwccnilqckrcqctkikiftseinlslyrsikslltregcfgneqetihhss lgiglkgfrlsssyqrysryfgigsthrfwynlwskygpqrhcyhccswfkny segsexkiksgiyigacki Frame C: fnsyhknlflnl*hfiiiklwsyfniffnklr*sqiivhyhnhhnfnhlevdhqi lqpriyfrnwkqshklhqmkqrmnftkkyhlstnclpvsrierksigiksihhql iwftikiyqqslnkelqnslqnwlfnmevvqqwvvlvqrvllklevkklsivf- -- ---FISNVDNLGAVVDFNILEAMDKNKVEYIMEVTNKTRADVKGGTLIQYEGKAKLLEIA QVPSSKVEEFKSIKKFKIFNTNNIWVNLKAMDRILKQNLLDDMDIIINPKVADGKNIIQL EIAAGAAIEFFNNARGVNVPRSRFLPVKSTSDLFIVQSNLYSLEKGVLVMNKNRPFTTVP LVKLGDNFKKVSDYQARIKGIPDILELDQLTVSGDITFGPNMVLKGTVIIVANHGSRIDI PKVQNXKrvrxftlglvnk*
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFG824 (SFG824Q) /CSM/SF/SFG8-A/SFG824Q.Seq.d/ 2512 0.0 CFH141 (CFH141Q) /CSM/CF/CFH1-B/CFH141Q.Seq.d/ 1515 0.0 AFN895 (AFN895Q) /CSM/AF/AFN8-D/AFN895Q.Seq.d/ 1497 0.0 AFD217 (AFD217Q) /CSM/AF/AFD2-A/AFD217Q.Seq.d/ 1465 0.0 AFI623 (AFI623Q) /CSM/AF/AFI6-A/AFI623Q.Seq.d/ 1463 0.0 AFM828 (AFM828Q) /CSM/AF/AFM8-B/AFM828Q.Seq.d/ 1437 0.0 SSA730 (SSA730Q) /CSM/SS/SSA7-B/SSA730Q.Seq.d/ 1431 0.0 SFI134 (SFI134Q) /CSM/SF/SFI1-B/SFI134Q.Seq.d/ 1425 0.0 AFC591 (AFC591Q) /CSM/AF/AFC5-D/AFC591Q.Seq.d/ 1415 0.0 SFE708 (SFE708Q) /CSM/SF/SFE7-A/SFE708Q.Seq.d/ 1409 0.0
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AF150929\|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds. 1417 0.0 3 L28007\|L28007.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase (UDPGP2) gene, partial cds. 254 6e-68 2 AX489345\|AX489345.1 Sequence 6645 from Patent WO02053728. 52 1e-17 5 AP006628\|AP006628.1 Onion yellows phytoplasma DNA, complete genome. 38 1e-09 28 AF004368\|AF004368.1 Cricetulus griseus UDP-glucose pyrophosphorylase mRNA, complete cds. 52 4e-09 3 BQ060478\|BQ060478.1 Bvstrg3ARGF7 Sugar Beet germination cDNA library Beta vulgaris cDNA 5' similar to UDP-glucose pyrophosphorylase, mRNA sequence. 70 9e-08 1 CD668886\|CD668886.1 eef1c.pk001.c10 eef1c Eucalyptus tereticornis cDNA clone eef1c.pk001.c10 5' end, mRNA sequence. 50 2e-07 3 AC117072\|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 32 5e-07 14 BD236031\|BD236031.1 Materials and method for modification of plant cell wall polysaccharides. 38 9e-07 4 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 40 9e-07 19
dna update	2003.12.28
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 416 e-115 S35692(S35692)UTP-glucose-1-phosphate uridylyltransferase (EC 2.... 272 2e-71 BC084711_1(BC084711\|pid:none) Rattus norvegicus UDP-glucose pyro... 272 2e-71 BC026626_1(BC026626\|pid:none) Mus musculus UDP-glucose pyrophosp... 271 3e-71 (Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 271 3e-71 AK153885_1(AK153885\|pid:none) Mus musculus 2 days neonate thymus... 271 3e-71 (Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 271 5e-71 S62599(S62599)UTP-glucose-1-phosphate uridylyltransferase (EC 2.... 269 2e-70 AK300731_1(AK300731\|pid:none) Homo sapiens cDNA FLJ56155 complet... 269 2e-70 CR860388_1(CR860388\|pid:none) Pongo abelii mRNA; cDNA DKFZp459A0... 268 2e-70
protein update	2009. 5.25
PSORT	psg: 0.76 gvh: 0.42 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.05 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: cytoplasmic 32.0 %: nuclear 16.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: vesicles of secretory system >> prediction for SFG824 is cyt
5' end seq. ID	SFG824F
5' end seq.	>SFG824F.Seq AATTTAATTCATATCATAAAAATTTATTTTTATAAAATCTATAGTAACACTAATTTATAA TAATCAAATTGTGGTCTTATTTTAATATTTTTTTTAATAAATTAAGATGATGAAGCCAGA TTTAAATAGTCCATTACCACAATCACCACAACTTCAATCATTTGGAAGTAGATCATCAGA TCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGCACCAAA TGAAACAGTAAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATTGTTTAC CCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAATCCACCACCAGC TGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAGAACTTCAGAACT CGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTTTAGGTACAACAATGGGTTGTAC TGGTCCAAAGAGTGTTATTGAAGTTAGAAGTGAAAAAACTTTCTTAGATTTAAGTGTTCA ----------
Length of 5' end seq.	540
3' end seq. ID	SFG824Z
3' end seq.	>SFG824Z.Seq ----------TATTCATTTCAAATGTAGATAATCTTGGTGCTGTTGTTGATTTTAACATT TTAGAAGCAATGGATAAAAATAAAGTTGAATATATTATGGAAGTTACAAATAAAACTAGA GCAGATGTTAAAGGTGGTACATTAATTCAATATGAAGGTAAAGCTAAATTATTGGAGATT GCACAAGTACCATCATCAAAGGTTGAAGAATTTAAATCAATAAAGAAATTCAAAATTTTT AATACCAATAACATTTGGGTCAATCTCAAAGCAATGGATCGTATTTTGAAACAAAATCTT TTGGATGATATGGATATCATTATCAATCCAAAGGTTGCTGATGGTAAAAATATCATTCAA TTGGAGATTGCTGCTGGTGCTGCAATTGAATTCTTTAACAATGCAAGAGGTGTCAATGTA CCAAGATCAAGATTTTTACCAGTGAAATCAACCTCTGATCTCTTTATCGTTCAATCAAAT CTCTACTCACTCGAGAAGGGTGTTTTGGTAATGAACAAGAATAGACCATTCACCACAGTT CCCTTGGTTAAATTGGGTGATAACTTTAAAAAGGTTTCAGATTATCAAGCTCGTATCAAA GGTATTCCAGATATTTTGGAATTGGATCAACTCACCGTTTCTGGTGATATAACCTTTGGT CCAAATATGGTCCTCAAAGGCACTGTTATCATTGTTGCTAATCATGGTTCAAGAATTGAT ATTCCGAAGGTTCAGAATTNAAAATAAAGAGTTAGGGNATTTACATTGGGGCTTGTAAAT AAATAAA
Length of 3' end seq.	777
Connected seq. ID	SFG824P
Connected seq.	>SFG824P.Seq AATTTAATTCATATCATAAAAATTTATTTTTATAAAATCTATAGTAACACTAATTTATAA TAATCAAATTGTGGTCTTATTTTAATATTTTTTTTAATAAATTAAGATGATGAAGCCAGA TTTAAATAGTCCATTACCACAATCACCACAACTTCAATCATTTGGAAGTAGATCATCAGA TCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGCACCAAA TGAAACAGTAAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATTGTTTAC CCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAATCCACCACCAGC TGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAGAACTTCAGAACT CGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTTTAGGTACAACAATGGGTTGTAC TGGTCCAAAGAGTGTTATTGAAGTTAGAAGTGAAAAAACTTTCTTAGATTTAAGTGTTCA ----------TATTCATTTCAAATGTAGATAATCTTGGTGCTGTTGTTGATTTTAACATT TTAGAAGCAATGGATAAAAATAAAGTTGAATATATTATGGAAGTTACAAATAAAACTAGA GCAGATGTTAAAGGTGGTACATTAATTCAATATGAAGGTAAAGCTAAATTATTGGAGATT GCACAAGTACCATCATCAAAGGTTGAAGAATTTAAATCAATAAAGAAATTCAAAATTTTT AATACCAATAACATTTGGGTCAATCTCAAAGCAATGGATCGTATTTTGAAACAAAATCTT TTGGATGATATGGATATCATTATCAATCCAAAGGTTGCTGATGGTAAAAATATCATTCAA TTGGAGATTGCTGCTGGTGCTGCAATTGAATTCTTTAACAATGCAAGAGGTGTCAATGTA CCAAGATCAAGATTTTTACCAGTGAAATCAACCTCTGATCTCTTTATCGTTCAATCAAAT CTCTACTCACTCGAGAAGGGTGTTTTGGTAATGAACAAGAATAGACCATTCACCACAGTT CCCTTGGTTAAATTGGGTGATAACTTTAAAAAGGTTTCAGATTATCAAGCTCGTATCAAA GGTATTCCAGATATTTTGGAATTGGATCAACTCACCGTTTCTGGTGATATAACCTTTGGT CCAAATATGGTCCTCAAAGGCACTGTTATCATTGTTGCTAATCATGGTTCAAGAATTGAT ATTCCGAAGGTTCAGAATTNAAAATAAAGAGTTAGGGNATTTACATTGGGGCTTGTAAAT AAATAAA
Length of connected seq.	1317
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas