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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFG817
Library SF
(Link to library)
Clone ID SFG817
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID SFG817P
(Link to Original site)
Representative DNA sequence 
>SFG817 (SFG817Q) /CSM/SF/SFG8-A/SFG817Q.Seq.d/
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAAATCNNCTTTTTTGAAAAAAAAAAX
XXXXXXXXXCTNTNANNNNCNNAGTNANGNTNNNNTNAANNTNCANAAAGNTANACNCAA
AATTCAAATNAANAAAGGTATANACNNAAANAAAAAGNTTTNATTNTTNNNTGGTAACNN
TTAGNAAATGGTGGANTNTNTANGATANAATATNCNAAAAAAATCAACTNTNCNNTTGGT
NNTNAGAATTAAGAGGTGGTATGNAAAATTTTTGTCAAAAACATTAANTGGTAAGNNCCA
TCACTNTTTNAAGTTGAGGGCTCAAGATAATATTGAAAATGTTAAAACAAAAGATTCAAG
NCAAAAGAAGGTATCCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGA
AGATGGTNGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCT
CAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACT
CGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGG
TATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTAC
TCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGG
TGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGG
TAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATNCCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
nsfllyky*ihilffyil*HFIKKKKKKKXKKSXFLKKK---

---XXXXVXXXXXXXKXXXKFKXXKVXTXXKXFXXXXVTXXKWWXXXDXIXXKNQLXXWX
XELRGGMXNFCQKH*xvxxitxxs*glkiilkmlkqkiqxkrryphqtnkd*fslvnn*k
mvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkv
fhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkv
vttlrm*kqkfktkkvx
Translated Amino Acid sequence (All Frames) 
Frame A:
kfifiiqilnsyfiflyivtfhkkkkkkkx*kixffekk---

---lxxxxxxxxxxxxxxtqnsnxxryxxkxkxxixxw*xlxnggxxxixyxkkinxxxg
xxn*evvxkifvknixw*xpslfxvegsr*y*kc*nkrfkxkegiptrptkinfrw*tir
rwxysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrr
ystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r
**qh*ecknknsrqrryx

Frame B:
nsfllyky*ihilffyil*HFIKKKKKKKXKKSXFLKKK---

---xxxxsxxxxxxxkxxxkiqxxkgixxxkkxxxxxgnx*xmvxxxxxnxxkkstxxlv
xrikrwyxkflsktlxgkxhhxxklraqdnienvktkdsxqkkvsppdqqrlifagkqle
dgxtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkeg
ippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitleveg
sdnienvktkiqdkegxp

Frame C:
ihfyytnikfifyffiycnis*kkkkkkxlknxlf*kkk---

---XXXXVXXXXXXXKXXXKFKXXKVXTXXKXFXXXXVTXXKWWXXXDXIXXKNQLXXWX
XELRGGMXNFCQKH*xvxxitxxs*glkiilkmlkqkiqxkrryphqtnkd*fslvnn*k
mvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkv
fhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkv
vttlrm*kqkfktkkvx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFG817 (SFG817Q) /CSM/SF/SFG8-A/SFG817Q.Seq.d/                       1120   0.0
CHA336 (CHA336Q) /CSM/CH/CHA3-B/CHA336Q.Seq.d/                       1011   0.0
CFJ707 (CFJ707Q) /CSM/CF/CFJ7-A/CFJ707Q.Seq.d/                       1009   0.0
CHA154 (CHA154Q) /CSM/CH/CHA1-C/CHA154Q.Seq.d/                       1007   0.0
SFI270 (SFI270Q) /CSM/SF/SFI2-C/SFI270Q.Seq.d/                        999   0.0
CFG337 (CFG337Q) /CSM/CF/CFG3-B/CFG337Q.Seq.d/                        999   0.0
CFF113 (CFF113Q) /CSM/CF/CFF1-A/CFF113Q.Seq.d/                        999   0.0
AFB143 (AFB143Q) /CSM/AF/AFB1-B/AFB143Q.Seq.d/                        999   0.0
SFI293 (SFI293Q) /CSM/SF/SFI2-D/SFI293Q.Seq.d/                        997   0.0
CHC521 (CHC521Q) /CSM/CH/CHC5-A/CHC521Q.Seq.d/                        997   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   892   0.0    4
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   884   0.0    4
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   884   0.0    4
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   567   e-164  4
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   549   e-156  4
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   533   e-151  3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   422   e-126  4
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   422   e-126  4
BJ528884|BJ528884.1 Oryzias latipes cDNA clone:MF01SSB034A18, 5' end single read.   182   3e-75  4
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   125   7e-73  5
dna update 2003.12.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   320   5e-86
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   320   5e-86
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   320   5e-86
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   316   7e-85
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...   308   1e-82
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   307   3e-82
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   306   8e-82
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   306   8e-82
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   306   8e-82
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   306   8e-82
protein update 2009. 5.25
PSORT 

 psg: 0.55  gvh: 0.43  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.47  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SFG817 is nuc
5' end seq. ID SFG817F
5' end seq. 
>SFG817F.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAAATCNNCTTTTTTGAAAAAAAAAA-
---------
Length of 5' end seq. 119
3' end seq. ID SFG817Z
3' end seq. 
>SFG817Z.Seq
----------CTNTNANNNNCNNAGTNANGNTNNNNTNAANNTNCANAAAGNTANACNCA
AAATTCAAATNAANAAAGGTATANACNNAAANAAAAAGNTTTNATTNTTNNNTGGTAACN
NTTAGNAAATGGTGGANTNTNTANGATANAATATNCNAAAAAAATCAACTNTNCNNTTGG
TNNTNAGAATTAAGAGGTGGTATGNAAAATTTTTGTCAAAAACATTAANTGGTAAGNNCC
ATCACTNTTTNAAGTTGAGGGCTCAAGATAATATTGAAAATGTTAAAACAAAAGATTCAA
GNCAAAAGAAGGTATCCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAG
AAGATGGTNGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCC
TCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACAC
TCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAG
GTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTA
CTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAG
GTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAG
GTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATNCCA
Length of 3' end seq. 766
Connected seq. ID SFG817P
Connected seq. 
>SFG817P.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAAATCNNCTTTTTTGAAAAAAAAAA-
---------CTNTNANNNNCNNAGTNANGNTNNNNTNAANNTNCANAAAGNTANACNCAA
AATTCAAATNAANAAAGGTATANACNNAAANAAAAAGNTTTNATTNTTNNNTGGTAACNN
TTAGNAAATGGTGGANTNTNTANGATANAATATNCNAAAAAAATCAACTNTNCNNTTGGT
NNTNAGAATTAAGAGGTGGTATGNAAAATTTTTGTCAAAAACATTAANTGGTAAGNNCCA
TCACTNTTTNAAGTTGAGGGCTCAAGATAATATTGAAAATGTTAAAACAAAAGATTCAAG
NCAAAAGAAGGTATCCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGA
AGATGGTNGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCT
CAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACT
CGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGG
TATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTAC
TCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGG
TGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGG
TAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATNCCA
Length of connected seq. 885
Full length Seq ID -
Full length Seq. -
Length of full length seq. -