SFG806
Library SF
(Link to library)
Clone ID SFG806
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID SFG806Z
(Link to Original site)
Representative DNA sequence
>SFG806 (SFG806Q) /CSM/SF/SFG8-A/SFG806Q.Seq.d/
XXXXXXXXXXAATAAGATTAAAGTCATCTGTGTTCCATCACCAAAAGGTACTTGCAAGAC
TGTTCAATGTCCAAAAGGTTACAAATGCAAACTCTATGCTGATGGTCCAACATGTGTAAA
GATTGAAAAACCAAAATGTCTCACTTGTAAAGATATGCATTGTGAGTCAAATGGATTACT
CTGTGTCTTGACTCCACAAAAGAAGACTGATGAAGAATGTTGTCCAATTATTCCAATCTG
TATCAATCCATCAACTATTGCCGCATCCACTATTGCCACTACAACTGCATCAACTCGTCA
CTCAACTGCCTCAACAATTGCCTCATTAGTCACTGGTACCACAAGTGGTGGTGGTGGTAT
GGGTTCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAATGCTATACTTGGTCT
CTTTGAAGACGATATTTTCTGGGGTGATAATGATGAATACTTTAGTGATAACTACCGTTA
TGTTGATGAAGAAGATATTGATGAAGATNTCNATGGTAATGATGNATTTGAAATTGATGT
TGAAGGTGATTTCCAAGAAGATGATTNNGAAGAAGAATANGCATTTNANTAAATTCCCTT
TTTTTCANAAAAANATAATAATAATAATTTAATAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence
---KIKVICVPSPKGTCKTVQCPKGYKCKLYADGPTCVKIEKPKCLTCKDMHCESNGLLC
VLTPQKKTDEECCPIIPICINPSTIAASTIATTTASTRHSTASTIASLVTGTTSGGGGMG
SFGGRSDEESSDPNAILGLFEDDIFWGDNDEYFSDNYRYVDEEDIDEDXXGNDXFEIDVE
GDFQEDDXEEEXAFX*ipffsxkxnnnnli


Translated Amino Acid sequence (All Frames)
Frame A:
---irlkssvfhhqkvlarlfnvqkvtnansmlmvqhv*rlknqnvslvkicivsqmdys
vs*lhkrrlmknvvqlfqsvsihqllphpllplqlhqlvtqlpqqlph*slvpqvvvvvw
vhlvvdpmknqviqmlylvslktifsgvimmntlvittvmlmkkilmkxsmvmmxlklml
kviskkmixkknxhxxkfpffxkxiiiii**


Frame B:
---*d*shlcsitkrylqdcsmskrlqmqtlc*wsnmckd*ktkmshl*ryal*vkwitl
cldstked**rmlsnysnlyqsinycrihychyncinsslnclnnclishwyhkwwwwyg
fiwwsir*rik*skcytwsl*rryflg****il***lplc**rry**rxxw**xi*n*c*
r*fprr*xxrrixixxnslffxkx****fnn


Frame C:
---KIKVICVPSPKGTCKTVQCPKGYKCKLYADGPTCVKIEKPKCLTCKDMHCESNGLLC
VLTPQKKTDEECCPIIPICINPSTIAASTIATTTASTRHSTASTIASLVTGTTSGGGGMG
SFGGRSDEESSDPNAILGLFEDDIFWGDNDEYFSDNYRYVDEEDIDEDXXGNDXFEIDVE
GDFQEDDXEEEXAFX*ipffsxkxnnnnli


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFG806 (SFG806Q) /CSM/SF/SFG8-A/SFG806Q.Seq.d/ 1118 0.0
CFI871 (CFI871Q) /CSM/CF/CFI8-C/CFI871Q.Seq.d/ 1116 0.0
SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/ 1112 0.0
SSJ101 (SSJ101Q) /CSM/SS/SSJ1-A/SSJ101Q.Seq.d/ 1112 0.0
SSC714 (SSC714Q) /CSM/SS/SSC7-A/SSC714Q.Seq.d/ 1112 0.0
SLE689 (SLE689Q) /CSM/SL/SLE6-D/SLE689Q.Seq.d/ 1112 0.0
SLA758 (SLA758Q) /CSM/SL/SLA7-C/SLA758Q.Seq.d/ 1112 0.0
SHB188 (SHB188Q) /CSM/SH/SHB1-D/SHB188Q.Seq.d/ 1112 0.0
SFJ658 (SFJ658Q) /CSM/SF/SFJ6-C/SFJ658Q.Seq.d/ 1112 0.0
SFH118 (SFH118Q) /CSM/SF/SFH1-A/SFH118Q.Seq.d/ 1112 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds. 1112 0.0 1
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence. 1112 0.0 7
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 38 0.005 10
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 50 0.038 1
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence. 50 0.038 1
CA855068|CA855068.1 PfESToac46b06.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence. 50 0.038 1
AC099694|AC099694.12 Mus musculus, clone RP23-195D9, complete sequence. 48 0.15 1
BE217634|BE217634.1 MD0264 Meloidogyne incognita J2 (#MD99-1) Meloidogyne incognita cDNA clone 2993 5' similar to unknown Meloidogyne incognita cDNA, mRNA sequence. 48 0.15 1
CD017930|CD017930.1 NXCI_150_D11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda cDNA clone NXCI_150_D11 5', mRNA sequence. 34 0.19 2
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5. 36 0.32 5
dna update 2003.12.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 235 7e-61
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 59 1e-07
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 59 1e-07
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 50 5e-05
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 49 1e-04
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 49 1e-04
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 44 0.005
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 40 0.054
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 39 0.12
AY142138_1(AY142138|pid:none) Giardia intestinalis isolate WB cl... 39 0.16
protein update 2009. 1.10
PSORT

psg: 0.72 gvh: 0.35 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for SFG806 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFG806Z
3' end seq.
>SFG806Z.Seq
----------AATAAGATTAAAGTCATCTGTGTTCCATCACCAAAAGGTACTTGCAAGAC
TGTTCAATGTCCAAAAGGTTACAAATGCAAACTCTATGCTGATGGTCCAACATGTGTAAA
GATTGAAAAACCAAAATGTCTCACTTGTAAAGATATGCATTGTGAGTCAAATGGATTACT
CTGTGTCTTGACTCCACAAAAGAAGACTGATGAAGAATGTTGTCCAATTATTCCAATCTG
TATCAATCCATCAACTATTGCCGCATCCACTATTGCCACTACAACTGCATCAACTCGTCA
CTCAACTGCCTCAACAATTGCCTCATTAGTCACTGGTACCACAAGTGGTGGTGGTGGTAT
GGGTTCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAATGCTATACTTGGTCT
CTTTGAAGACGATATTTTCTGGGGTGATAATGATGAATACTTTAGTGATAACTACCGTTA
TGTTGATGAAGAAGATATTGATGAAGATNTCNATGGTAATGATGNATTTGAAATTGATGT
TGAAGGTGATTTCCAAGAAGATGATTNNGAAGAAGAATANGCATTTNANTAAATTCCCTT
TTTTTCANAAAAANATAATAATAATAATTTAATAAC
Length of 3' end seq. 626
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -