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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFG772
Library SF
(Link to library)
Clone ID SFG772
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16598-1
Original site URL
Representative seq. ID SFG772P
(Link to Original site)
Representative DNA sequence 
>SFG772 (SFG772Q) /CSM/SF/SFG7-C/SFG772Q.Seq.d/
ATATATATAAAAAATGGCATCTATAAATACAGAATCGGATGATTATCATCCAATTGTTAT
TTTAATTGATGAATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAAAAAACT
TCAATCAATTGCAAAAGCATTAGGACCAGAACGTACCCGTACAGAATTAATCCCATATTT
ACAAGACTCTGTTCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGAATTAGG
AAATTTAATCGAGTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACCATTACA
AATTTTAGCAGGTGCTGAGGAATTAGTTGTTAGAGAAAAGGCAGTGGAATCATTATGTAA
AATTGCAAAAGAGATCCCAACATCATCATTCGAAGAATCATTCCTTCCATTATTATTTTC
ATTATCAAAAGCAGATTGGTTTACATCACGTACATCAGCATGTGGACTTTTCACTGTATC
ATATCCAAGAGCAAATGCTGAAATGAAGAAATCTTTAAGAAAAACTTTTGGGGGATTATG
TCACGATGATACACCAATGGTTAAGAGAGCTGCTGCAACTAXXXXXXXXXXGAGCTGCAC
TTGCTCAAGTCATTATGTCATTGGCACCAATTTATGGTAAAGAAGATACATTAACCTCAT
CTTTTAGAATTGTTTTTACATCTCTTAAAAGATGATTTCCCAGATGTTCGTTTAAATATC
ATTTCAAAATTAGATCAAGTAAGTAAAGTAATTGGTATTGAAATGTTATCACAATCTCTA
TTACCAGCTATCGTTGAATTGGCTGAAGATCATCAATGGAGAGTAAGATTAGCAATTATT
GATTATATTCCACTTTTAGCTTCACAATTAGGTGTTGAATTCTTTGATGAAAAACTTGGT
AATTTATGTATGACTTGGTTAGGTGATCCAGTATTTTCAATTCGTGAAGCAGCAACTAAT
AATTTGAAGAAATTAACCGAAGTATTTGGAGTTGATTGGGCAAAGAATAATATTATTCCA
AAAGTTTTATCTTTACACTCTCATCCAAACTATCTCTATCGTATGACCACATTATTTTCA
ATTTCAACCCTTTCAACTGTTGTTGGAGGTGATGTTATCTCTAGTTCAATGGTTCCTTTA
TTGGCCAAAATGGTTTCCGATAAAGTTCCAAATATTAGATTTAATGTAGCTAAAACTTTC
CAAACCATTATTCCATTACTCGATAGCACAATTGTACAATCAAGAGTCAAACCATTACTC
GTAAAACTTCAGAAGATACNATAAAGATGTTAATTCTAGCNAGCCAAGCACTCCAATTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
yi*KMASINTESDDYHPIVILIDELKNEDIQLRLNSIKKLQSIAKALGPERTRTELIPYL
QDSVLEDEDEVLVVLSEELGNLIEFVGGAEHAVCLLPPLQILAGAEELVVREKAVESLCK
IAKEIPTSSFEESFLPLLFSLSKADWFTSRTSACGLFTVSYPRANAEMKKSLRKTFGGLC
HDDTPMVKRAAAT---

---AALAQVIMSLAPIYGKEDTLTSSFRIVFTSLKR*fprcsfkyhfkirssk*snwy*n
vitisitsyr*ig*rssmeskisny*lystfsftirc*il**ktw*fmydlvr*ssifns
*ssn**feeinrsiws*lgke*yysksfiftlssklslsydhiifnfnpfnccwr*cyl*
fngsfigqngfr*ssky*i*cs*nfpnhysitr*hnctiksqtitrktsedtikmlilas
qalql
Translated Amino Acid sequence (All Frames) 
Frame A:
iyikngiykyrig*lssncyfn**ikk*gytt*t*fnkktsincksirtrtypyrinpif
trlcsrr*r*sfsciirrirkfnrvcwwcrtcclfittitnfsrc*gisc*rkgsgiim*
nckrdpniiirriipsiiifiiksrlvyityismwtfhciiskskc*neeifkknfwgim
sr*ytng*esccn---

---elhllkslchwhqfmvkkih*phllelflhllkddfpdvrlniiskldqvskvigie
mlsqsllpaivelaedhqwrvrlaiidyipllasqlgveffdeklgnlcmtwlgdpvfsi
reaatnnlkkltevfgvdwaknniipkvlslhshpnylyrmttlfsistlstvvggdvis
ssmvpllakmvsdkvpnirfnvaktfqtiiplldstivqsrvkpllvklqkix*rc*f*x
akhsn

Frame B:
yi*KMASINTESDDYHPIVILIDELKNEDIQLRLNSIKKLQSIAKALGPERTRTELIPYL
QDSVLEDEDEVLVVLSEELGNLIEFVGGAEHAVCLLPPLQILAGAEELVVREKAVESLCK
IAKEIPTSSFEESFLPLLFSLSKADWFTSRTSACGLFTVSYPRANAEMKKSLRKTFGGLC
HDDTPMVKRAAAT---

---sctcsshyvigtnlw*rryinlif*ncfyis*kmisqmfv*isfqn*ik*vk*lvlk
cyhnlyyqlslnwlkiinge*d*qlliifhf*lhn*vlnslmknlviyv*lg*viqyfqf
vkqqlii*rn*pkyleligqriilfqkfylytliqtisiv*phyfqfqpfqlllevmlsl
vqwflywpkwfpikfqildlm*lklskplfhysiaqlynqesnhys*nfrryxkdvnssx
pstpi

Frame C:
iykkwhl*iqnrmiiiqllf*lmn*kmriynldliq*knfnqlqkh*dqnvpvqn*shiy
ktlfskmkmkf*lyyqkn*ei*ssllvvqnmlfvyyhhykf*qvlrn*llekrqwnhyvk
lqkrsqhhhsknhsfhyyfhyqkqiglhhvhqhvdfslyhiqeqmlk*rnl*ekllgdyv
tmihqwlrellql---

---AALAQVIMSLAPIYGKEDTLTSSFRIVFTSLKR*fprcsfkyhfkirssk*snwy*n
vitisitsyr*ig*rssmeskisny*lystfsftirc*il**ktw*fmydlvr*ssifns
*ssn**feeinrsiws*lgke*yysksfiftlssklslsydhiifnfnpfnccwr*cyl*
fngsfigqngfr*ssky*i*cs*nfpnhysitr*hnctiksqtitrktsedtikmlilas
qalql
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFG772 (SFG772Q) /CSM/SF/SFG7-C/SFG772Q.Seq.d/                       2502   0.0
AFL883 (AFL883Q) /CSM/AF/AFL8-D/AFL883Q.Seq.d/                       2416   0.0
AFO390 (AFO390Q) /CSM/AF/AFO3-D/AFO390Q.Seq.d/                       1405   0.0
SFF891 (SFF891Q) /CSM/SF/SFF8-D/SFF891Q.Seq.d/                       1374   0.0
AFK893 (AFK893Q) /CSM/AF/AFK8-D/AFK893Q.Seq.d/                       1360   0.0
SFF850 (SFF850Q) /CSM/SF/SFF8-C/SFF850Q.Seq.d/                       1358   0.0
SFD371 (SFD371Q) /CSM/SF/SFD3-C/SFD371Q.Seq.d/                       1358   0.0
SFJ287 (SFJ287Q) /CSM/SF/SFJ2-D/SFJ287Q.Seq.d/                       1352   0.0
SFJ265 (SFJ265Q) /CSM/SF/SFJ2-C/SFJ265Q.Seq.d/                       1350   0.0
CFJ329 (CFJ329Q) /CSM/CF/CFJ3-B/CFJ329Q.Seq.d/                       1338   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U61987|U61987.1 Dictyostelium discoideum phosphoprotein phosphatase A (pppA) mRNA,complete cds.  1205   0.0    3
AL428358|AL428358.1 clone BA0AB025C09 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    48   2e-11  3
BU276111|BU276111.1 Cr_Emb_06C12_TEXF1 Convoluta roscoffensis embryos from Eva Jiminez Convoluta roscoffensis cDNA clone Cr_Emb_06C12 5' similar to Q23922 PHOSPHOPROTEIN PHOSPHATASE A. Dictyostelium discoideum, mRNA sequence.    58   2e-09  4
BI516804|BI516804.1 BB160023B10E05 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160023B10E05 5', mRNA sequence.    44   1e-06  3
AX829534|AX829534.1 Sequence 254 from Patent WO03072602.           44   4e-05  3
AX818504|AX818504.1 Sequence 254 from Patent EP1338608.            44   4e-05  3
AX596522|AX596522.1 Sequence 2176 from Patent EP1258494.           44   4e-05  3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   6e-05  19
L05146|L05146.3 Saccharomyces cerevisiae chromosome I left arm sequence.    44   9e-05  4
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    38   9e-05  13
dna update 2003.12.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61987_1(U61987|pid:none) Dictyostelium discoideum phosphoprotei...   375   e-110
AM920433_216(AM920433|pid:none) Penicillium chrysogenum Wisconsi...   269   2e-72
AM270402_10(AM270402|pid:none) Aspergillus niger contig An18c010...   262   7e-71
AJ131045_1(AJ131045|pid:none) Cicer arietinum mRNA for protein p...   259   9e-71
AF196287_1(AF196287|pid:none) Medicago sativa subsp. x varia Ser...   256   8e-70
EU965946_1(EU965946|pid:none) Zea mays clone 290216 serine/threo...   256   8e-70
AJ243828_1(AJ243828|pid:none) Oryza sativa mRNA for protein phos...   255   8e-70
(Q38951) RecName: Full=Serine/threonine-protein phosphatase 2A 6...   253   1e-68
T03684(T03684) phosphoprotein phosphatase (EC 3.1.3.16) 2A regul...   253   1e-68
AF196286_1(AF196286|pid:none) Medicago sativa subsp. x varia Ser...   251   1e-68
protein update 2009. 5.25
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SFG772 is cyt
5' end seq. ID SFG772F
5' end seq. 
>SFG772F.Seq
ATATATATAAAAAATGGCATCTATAAATACAGAATCGGATGATTATCATCCAATTGTTAT
TTTAATTGATGAATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAAAAAACT
TCAATCAATTGCAAAAGCATTAGGACCAGAACGTACCCGTACAGAATTAATCCCATATTT
ACAAGACTCTGTTCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGAATTAGG
AAATTTAATCGAGTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACCATTACA
AATTTTAGCAGGTGCTGAGGAATTAGTTGTTAGAGAAAAGGCAGTGGAATCATTATGTAA
AATTGCAAAAGAGATCCCAACATCATCATTCGAAGAATCATTCCTTCCATTATTATTTTC
ATTATCAAAAGCAGATTGGTTTACATCACGTACATCAGCATGTGGACTTTTCACTGTATC
ATATCCAAGAGCAAATGCTGAAATGAAGAAATCTTTAAGAAAAACTTTTGGGGGATTATG
TCACGATGATACACCAATGGTTAAGAGAGCTGCTGCAACTA----------
Length of 5' end seq. 581
3' end seq. ID SFG772Z
3' end seq. 
>SFG772Z.Seq
----------GAGCTGCACTTGCTCAAGTCATTATGTCATTGGCACCAATTTATGGTAAA
GAAGATACATTAACCTCATCTTTTAGAATTGTTTTTACATCTCTTAAAAGATGATTTCCC
AGATGTTCGTTTAAATATCATTTCAAAATTAGATCAAGTAAGTAAAGTAATTGGTATTGA
AATGTTATCACAATCTCTATTACCAGCTATCGTTGAATTGGCTGAAGATCATCAATGGAG
AGTAAGATTAGCAATTATTGATTATATTCCACTTTTAGCTTCACAATTAGGTGTTGAATT
CTTTGATGAAAAACTTGGTAATTTATGTATGACTTGGTTAGGTGATCCAGTATTTTCAAT
TCGTGAAGCAGCAACTAATAATTTGAAGAAATTAACCGAAGTATTTGGAGTTGATTGGGC
AAAGAATAATATTATTCCAAAAGTTTTATCTTTACACTCTCATCCAAACTATCTCTATCG
TATGACCACATTATTTTCAATTTCAACCCTTTCAACTGTTGTTGGAGGTGATGTTATCTC
TAGTTCAATGGTTCCTTTATTGGCCAAAATGGTTTCCGATAAAGTTCCAAATATTAGATT
TAATGTAGCTAAAACTTTCCAAACCATTATTCCATTACTCGATAGCACAATTGTACAATC
AAGAGTCAAACCATTACTCGTAAAACTTCAGAAGATACNATAAAGATGTTAATTCTAGCN
AGCCAAGCACTCCAATTA
Length of 3' end seq. 728
Connected seq. ID SFG772P
Connected seq. 
>SFG772P.Seq
ATATATATAAAAAATGGCATCTATAAATACAGAATCGGATGATTATCATCCAATTGTTAT
TTTAATTGATGAATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAAAAAACT
TCAATCAATTGCAAAAGCATTAGGACCAGAACGTACCCGTACAGAATTAATCCCATATTT
ACAAGACTCTGTTCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGAATTAGG
AAATTTAATCGAGTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACCATTACA
AATTTTAGCAGGTGCTGAGGAATTAGTTGTTAGAGAAAAGGCAGTGGAATCATTATGTAA
AATTGCAAAAGAGATCCCAACATCATCATTCGAAGAATCATTCCTTCCATTATTATTTTC
ATTATCAAAAGCAGATTGGTTTACATCACGTACATCAGCATGTGGACTTTTCACTGTATC
ATATCCAAGAGCAAATGCTGAAATGAAGAAATCTTTAAGAAAAACTTTTGGGGGATTATG
TCACGATGATACACCAATGGTTAAGAGAGCTGCTGCAACTA----------GAGCTGCAC
TTGCTCAAGTCATTATGTCATTGGCACCAATTTATGGTAAAGAAGATACATTAACCTCAT
CTTTTAGAATTGTTTTTACATCTCTTAAAAGATGATTTCCCAGATGTTCGTTTAAATATC
ATTTCAAAATTAGATCAAGTAAGTAAAGTAATTGGTATTGAAATGTTATCACAATCTCTA
TTACCAGCTATCGTTGAATTGGCTGAAGATCATCAATGGAGAGTAAGATTAGCAATTATT
GATTATATTCCACTTTTAGCTTCACAATTAGGTGTTGAATTCTTTGATGAAAAACTTGGT
AATTTATGTATGACTTGGTTAGGTGATCCAGTATTTTCAATTCGTGAAGCAGCAACTAAT
AATTTGAAGAAATTAACCGAAGTATTTGGAGTTGATTGGGCAAAGAATAATATTATTCCA
AAAGTTTTATCTTTACACTCTCATCCAAACTATCTCTATCGTATGACCACATTATTTTCA
ATTTCAACCCTTTCAACTGTTGTTGGAGGTGATGTTATCTCTAGTTCAATGGTTCCTTTA
TTGGCCAAAATGGTTTCCGATAAAGTTCCAAATATTAGATTTAATGTAGCTAAAACTTTC
CAAACCATTATTCCATTACTCGATAGCACAATTGTACAATCAAGAGTCAAACCATTACTC
GTAAAACTTCAGAAGATACNATAAAGATGTTAATTCTAGCNAGCCAAGCACTCCAATTA
Length of connected seq. 1309
Full length Seq ID -
Full length Seq. -
Length of full length seq. -