SFG756
Library SF
(Link to library)
Clone ID SFG756
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15579-1
Original site URL
Representative seq. ID SFG756P
(Link to Original site)
Representative DNA sequence
>SFG756 (SFG756Q) /CSM/SF/SFG7-C/SFG756Q.Seq.d/
ATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTA
ACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAA
AAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAAXXXXXXXXXXTNNTNTNNAATA
GNNNTNGGNTNTNNNNCNATTNNNAANNANNGTAATNATAATNANNCATGNNNCNNTNAT
NNNTGTNATNNANNNATAGGNTGNTANTATNATAAGTTTNATNANTGTNANGCATGTAAN
NCTGTANANNNNTGTATNNNAAATNATNTATGCTTNNCAANGNAATGTAATCCAANANGN
ANNNCNCCNTGTTTAATAANCCNTATTAATTGNNCAAGCNNTNATCCATGCATTTTTTCA
TANTGTNANAATGGTGTATGTATTNCNACANACATTTGTACTNNAACTCCATCTGTAACT
NCANCTGTTACNNCANCTGTTACTNCANCTGTTACCCCAACTGTTACACCAACCGTTACT
CCAACCGTTACCCCAACTCCAACTACAACTCCAACTCCAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
yehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---XXXIXXGXXXIXXXXNXNXXXXXXXCXXXIGXXYXKFXXCXACXXVXXCXXNXXCXX
XXCNPXXXXPCLIXXINXXSXXPCIFSXCXNGVCIXTXICTXTPSVTXXVTXXVTXXVTP
TVTPTVTPTVTPTPTTTPTP


Translated Amino Acid sequence (All Frames)
Frame A:
i*tfnk*ntikiniiyifivtlyeylkigkhflkigkhy*kkk*idf*l*kk---

---XXXIXXGXXXIXXXXNXNXXXXXXXCXXXIGXXYXKFXXCXACXXVXXCXXNXXCXX
XXCNPXXXXPCLIXXINXXSXXPCIFSXCXNGVCIXTXICTXTPSVTXXVTXXVTXXVTP
TVTPTVTPTVTPTPTTTPTP

Frame B:
yehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---xxx*xxxxxxxxxxvxixxhxxxxxvxxx*xxxxisxxxvxhvxlxxxvxxxxyaxq
xnviqxxxxxv**xxlixqaxihaffhxvxmvyvxxxtfvlxlhl*lxllxxlllxllpq
llhqpllqplpqlqlqlqlh

Frame C:
mni**ikhnknqyylyiysnii*ifknwktffknwktllkkein*fliikkk---

---xxnxxxxxxxxxxx*x*xxmxxxxxxxxxrxxxx*vxxxxxm*xcxxxyxkxxmlxx
xm*sxxxxxxfnxpy*lxkxxsmhffixxxwcmyxxxhlyxnsicnxxcyxxcyxxcypn
cytnrysnrypnsnynsns

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH875 (SSH875Q) /CSM/SS/SSH8-D/SSH875Q.Seq.d/ 317 1e-85
SLH793 (SLH793Q) /CSM/SL/SLH7-D/SLH793Q.Seq.d/ 317 1e-85
SLA680 (SLA680Q) /CSM/SL/SLA6-D/SLA680Q.Seq.d/ 317 1e-85
SFI265 (SFI265Q) /CSM/SF/SFI2-C/SFI265Q.Seq.d/ 317 1e-85
SFG756 (SFG756Q) /CSM/SF/SFG7-C/SFG756Q.Seq.d/ 317 1e-85
CHH341 (CHH341Q) /CSM/CH/CHH3-B/CHH341Q.Seq.d/ 317 1e-85
CHD753 (CHD753Q) /CSM/CH/CHD7-C/CHD753Q.Seq.d/ 317 1e-85
CHC630 (CHC630Q) /CSM/CH/CHC6-B/CHC630Q.Seq.d/ 317 1e-85
CHC347 (CHC347Q) /CSM/CH/CHC3-B/CHC347Q.Seq.d/ 317 1e-85
CHB865 (CHB865Q) /CSM/CH/CHB8-C/CHB865Q.Seq.d/ 317 1e-85

own update 2004. 5.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strainAX4, complete sequence. 40 1e-04 8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 4e-04 10
CE707845|CE707845.1 tigr-gss-dog-17000369256437 Dog Library Canis familiaris genomic, genomic survey sequence. 40 5e-04 2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 54 0.002 9
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence. 42 0.018 8
AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 44 0.021 10
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence. 46 0.028 6
AC145551|AC145551.3 Mus musculus chromosome UNK clone RP23-73O14, WORKING DRAFT SEQUENCE, 16 unordered pieces. 40 0.030 4
AC102666|AC102666.12 Mus musculus chromosome 1, clone RP23-444A8, complete sequence. 50 0.034 1
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 42 0.035 8
dna update 2003.12.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 98 1e-19
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 34 2.4

protein update 2009. 1.10
PSORT

psg: 0.52 gvh: 0.50 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.58 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

84.0 %: mitochondrial
8.0 %: nuclear
4.0 %: cytoplasmic
4.0 %: vesicles of secretory system

>> prediction for SFG756 is mit

5' end seq. ID SFG756F
5' end seq.
>SFG756F.Seq
ATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTA
ACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAA
AAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAA----------
Length of 5' end seq. 158
3' end seq. ID SFG756Z
3' end seq.
>SFG756Z.Seq
----------TNNTNTNNAATAGNNNTNGGNTNTNNNNCNATTNNNAANNANNGTAATNA
TAATNANNCATGNNNCNNTNATNNNTGTNATNNANNNATAGGNTGNTANTATNATAAGTT
TNATNANTGTNANGCATGTAANNCTGTANANNNNTGTATNNNAAATNATNTATGCTTNNC
AANGNAATGTAATCCAANANGNANNNCNCCNTGTTTAATAANCCNTATTAATTGNNCAAG
CNNTNATCCATGCATTTTTTCATANTGTNANAATGGTGTATGTATTNCNACANACATTTG
TACTNNAACTCCATCTGTAACTNCANCTGTTACNNCANCTGTTACTNCANCTGTTACCCC
AACTGTTACACCAACCGTTACTCCAACCGTTACCCCAACTCCAACTACAACTCCAACTCC
AT
Length of 3' end seq. 412
Connected seq. ID SFG756P
Connected seq.
>SFG756P.Seq
ATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTA
ACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAA
AAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAA----------TNNTNTNNAATA
GNNNTNGGNTNTNNNNCNATTNNNAANNANNGTAATNATAATNANNCATGNNNCNNTNAT
NNNTGTNATNNANNNATAGGNTGNTANTATNATAAGTTTNATNANTGTNANGCATGTAAN
NCTGTANANNNNTGTATNNNAAATNATNTATGCTTNNCAANGNAATGTAATCCAANANGN
ANNNCNCCNTGTTTAATAANCCNTATTAATTGNNCAAGCNNTNATCCATGCATTTTTTCA
TANTGTNANAATGGTGTATGTATTNCNACANACATTTGTACTNNAACTCCATCTGTAACT
NCANCTGTTACNNCANCTGTTACTNCANCTGTTACCCCAACTGTTACACCAACCGTTACT
CCAACCGTTACCCCAACTCCAACTACAACTCCAACTCCAT
Length of connected seq. 570
Full length Seq ID -
Full length Seq. -
Length of full length seq. -