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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFG713
Library SF
(Link to library)
Clone ID SFG713
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12894-1
Original site URL
Representative seq. ID SFG713Z
(Link to Original site)
Representative DNA sequence 
>SFG713 (SFG713Q) /CSM/SF/SFG7-A/SFG713Q.Seq.d/
XXXXXXXXXXCTTGGTAAAAATGATACGTGTTGCTTTGTAAATAAATGTGAAACCATTAA
TAGATGTTTAGAAGCTGACTGTAATGAAGGAACCAATTTCCAATGTGATTACCATATAAA
GAATTGTAGTGATGGTGATATTTGTTCAACTGATGGTTGTGATATTGGTTTTGGATGTAT
TAATTTACCTATAAACTGTGATGATGGAAATTATTGTACTAAAGATTATTGTGATCCAAC
ATATGGATGTTTACATATCGAAACTGCAAATTGCACTGAATGTTTAGAAACAGGTTGTAT
AACTGTTCTCCCATGTTTCCCAGTAACATGTGACAGTTTAAATAGTAGCCACTGTGTTGC
TAGTGCTATGAATTGCTCAGATAACGATCCATGTACATCAACAGAATGCGTTAATGGAGA
ATGTACATATGAGTGGATTTGTGGATCAGAAGATTCATCATCTGGTGTTGTAGATTCATC
ATCTGGTGTTGTAGATTCATCATCTGATGTTATTGATTCTTCAGATATTATTATTGATTC
TTCATCCGATATCCCAATACCAACACTATCACCTTCCCCTCAACCATCACGTTTCCCAAC
TGATACACCAACTAATACACCAATGCCNCCNACCCGNCCTCCACACTCCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---GKNDTCCFVNKCETINRCLEADCNEGTNFQCDYHIKNCSDGDICSTDGCDIGFGCIN
LPINCDDGNYCTKDYCDPTYGCLHIETANCTECLETGCITVLPCFPVTCDSLNSSHCVAS
AMNCSDNDPCTSTECVNGECTYEWICGSEDSSSGVVDSSSGVVDSSSDVIDSSDIIIDSS
SDIPIPTLSPSPQPSRFPTDTPTNTPMPPTRPPHS
Translated Amino Acid sequence (All Frames) 
Frame A:
---lvkmirval*invkplidv*kltvmkepisnviti*rivvmvifvqlmvvilvldvl
iyl*tvmmeiivlkiiviqhmdvyisklqialnv*kqvv*lfshvsq*hvtv*ivatvll
vl*iaqitihvhqqnalmenvhmsgfvdqkihhlvl*ihhlvl*ihhlmllilqilllil
hpisqyqhyhlplnhhvsqlihqlihqcxxpxlhtp


Frame B:
---w*k*yvllck*m*nh**mfrs*l**rnqfpm*lpykel**w*ylfn*wl*ywfwmy*
ftykl**wklly*rll*sniwmftyrncklh*mfrnrlyncspmfpsnm*qfk**plcc*
cyellr*rsmyinrmr*wrmyi*vdlwirrfiiwccrfiiwccrfii*cy*ffryyy*ff
irypntntitfpstitfpn*ytn*ytnaxxpxstl


Frame C:
---GKNDTCCFVNKCETINRCLEADCNEGTNFQCDYHIKNCSDGDICSTDGCDIGFGCIN
LPINCDDGNYCTKDYCDPTYGCLHIETANCTECLETGCITVLPCFPVTCDSLNSSHCVAS
AMNCSDNDPCTSTECVNGECTYEWICGSEDSSSGVVDSSSGVVDSSSDVIDSSDIIIDSS
SDIPIPTLSPSPQPSRFPTDTPTNTPMPPTRPPHS
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFG713 (SFG713Q) /CSM/SF/SFG7-A/SFG713Q.Seq.d/                       1251   0.0
CFK495 (CFK495Q) /CSM/CF/CFK4-D/CFK495Q.Seq.d/                       1237   0.0
CHD187 (CHD187Q) /CSM/CH/CHD1-D/CHD187Q.Seq.d/                       1229   0.0
CFI502 (CFI502Q) /CSM/CF/CFI5-A/CFI502Q.Seq.d/                       1158   0.0
SFJ187 (SFJ187Q) /CSM/SF/SFJ1-D/SFJ187Q.Seq.d/                       1120   0.0
CFH396 (CFH396Q) /CSM/CF/CFH3-D/CFH396Q.Seq.d/                       1120   0.0
CHL684 (CHL684Q) /CSM/CH/CHL6-D/CHL684Q.Seq.d/                       1114   0.0
SFG380 (SFG380Q) /CSM/SF/SFG3-D/SFG380Q.Seq.d/                       1074   0.0
AFK842 (AFK842Q) /CSM/AF/AFK8-B/AFK842Q.Seq.d/                       1063   0.0
CFI858 (CFI858Q) /CSM/CF/CFI8-C/CFI858Q.Seq.d/                       1051   0.0
own update 2002.10. 9
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115935|AC115935.4 Mus musculus clone RP24-545D23, WORKING DRAFT SEQUENCE, 4 ordered pieces.    34   0.19   7
AC116955|AC116955.2 Dictyostelium discoideum chromosome 2 map 5455881-5481449 strain AX4, complete sequence.    46   0.60   1
X78948|X78948.1 D.minutum ecmB gene.                               46   0.60   1
BX284625|BX284625.4 Zebrafish DNA sequence from clone DKEYP-55F12 in linkage group 20.    32   1.2    2
AC027039|AC027039.2 Homo sapiens clone RP11-26N11, WORKING DRAFT SEQUENCE, 17 unordered pieces.    34   1.4    5
AJ537992|AJ537992.1 Timarcha balearica EST, clone Timarcha6A3.     44   2.4    1
AJ537978|AJ537978.1 Timarcha balearica EST, clone Timarcha5G8.     44   2.4    1
AJ537839|AJ537839.1 Timarcha balearica EST, clone Timarcha4C2.     44   2.4    1
AJ537754|AJ537754.1 Timarcha balearica EST, clone Timarcha3A7.     44   2.4    1
AJ537958|AJ537958.1 Timarcha balearica EST, clone Timarcha5E10.    44   2.4    1
dna update 2003.12.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                359   4e-98
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                134   2e-30
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                103   5e-21
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    93   7e-18
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    88   2e-16
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    87   5e-16
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    87   5e-16
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    87   5e-16
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 83   6e-15
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 74   4e-12
protein update 2009. 5.25
PSORT 

 psg: 0.61  gvh: 0.27  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SFG713 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFG713Z
3' end seq. 
>SFG713Z.Seq
----------CTTGGTAAAAATGATACGTGTTGCTTTGTAAATAAATGTGAAACCATTAA
TAGATGTTTAGAAGCTGACTGTAATGAAGGAACCAATTTCCAATGTGATTACCATATAAA
GAATTGTAGTGATGGTGATATTTGTTCAACTGATGGTTGTGATATTGGTTTTGGATGTAT
TAATTTACCTATAAACTGTGATGATGGAAATTATTGTACTAAAGATTATTGTGATCCAAC
ATATGGATGTTTACATATCGAAACTGCAAATTGCACTGAATGTTTAGAAACAGGTTGTAT
AACTGTTCTCCCATGTTTCCCAGTAACATGTGACAGTTTAAATAGTAGCCACTGTGTTGC
TAGTGCTATGAATTGCTCAGATAACGATCCATGTACATCAACAGAATGCGTTAATGGAGA
ATGTACATATGAGTGGATTTGTGGATCAGAAGATTCATCATCTGGTGTTGTAGATTCATC
ATCTGGTGTTGTAGATTCATCATCTGATGTTATTGATTCTTCAGATATTATTATTGATTC
TTCATCCGATATCCCAATACCAACACTATCACCTTCCCCTCAACCATCACGTTTCCCAAC
TGATACACCAACTAATACACCAATGCCNCCNACCCGNCCTCCACACTCCA
Length of 3' end seq. 640
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -