SFG704 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFG704
Library	SF (Link to library)
Clone ID	SFG704 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13922-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFG7-A/SFG704Q.Seq.d/
Representative seq. ID	SFG704E (Link to Original site)
Representative DNA sequence	>SFG704 (SFG704Q) /CSM/SF/SFG7-A/SFG704Q.Seq.d/ TTTTATTTTTTATACAACCAAAACTATATAAATAAATATATATAAATATAATTACAATTT AAAATGTACTCACCAGAAGATTTAGAATATAGAGAACAACAACGTTTAAGTAAAGCATTA CAAGGTAAATTAGGTGGTGCAAGCTCAAGAAAATCATGGGCACCAGTTGTAACAGGTAAA CCACAAACACATAGTGCACCAGTTAATAGTTCATTTGCATCAATTTCAATTTCAGATAAG CACCACGAATCACCATCAACAACAACATCATCACCATCAACATCATCAGGTGTTGATAAT AGTTCAATCTATCCAGGTGCAATCGTTGAGGATAAAGTTAAATCACAAGAAGCACACCGT TTGAAAAAGATGGGTCTTTCAACTGAAGAAGATGAATCAACCGCTCATATTCCAGCATAT ACTTCATTAAATTCATCATCCTCATCCACCATCTCAAAGAGTAATAGCAATCAAAGCCTT GCAAAGGAAACCAGTAGTAACAACCTCTTGCAATATCAATCACCAGTTAGAGTAGCCAGC TCAACATCATCTGAGAATTTAGTCGATAGTGCTTCCATTATGAACAACGTTGATTCTCAT ACCTCTGAAGAGAAAATGAAGCAAGAGGCAAAGAGATTAGAAAGATGGGGTTTAAAGATT AACTCACCAACTGCTACCTCANCAAGCACTACCTCACCACCAGTCTCTAGTACCACTCCG GTTGCACCAGTGACTCCAACCGAACAATCTGTACCACAATCTCCATTCTCAACTGGTGCT GCCGTCTCTGTCAATCAAAGTCATAGCAATCTCCCAATCGCTACTACCCAACAATTCCTT GATCGTATCGTTCTCTCTGCTAAATCCGTTAAACAAATCATTCAAAAGAAAACCTCTAAT CGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAAGGAATCTGCAAACTTTGGTATG ACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTCTCAAAATGCTGGTAAACTCGCT GGTGCTGTCAATGAATTAGTTAAAGACNCTGCTCACGAAAATAATAAAAT
sequence update	2001. 6. 9
Translated Amino Acid sequence	fyflynqnyinkyiiLQFKMYSPEDLEYREQQRLSKALQGKLGGASSRKSWAPVVTGK PQTHSAPVNSSFASISISDKHHESPSTTTSSPSTSSGVDNSSIYPGAIVEDKVKSQEAHR LKKMGLSTEEDESTAHIPAYTSLNSSSSSTISKSNSNQSLAKETSSNNLLQYQSPVRVAS STSSENLVDSASIMNNVDSHTSEEKMKQEAKRLERWGLKINSPTATSXSTTSPPVSSTTP VAPVTPTEQSVPQSPFSTGAAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTSN RDIVISILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNELVKDXAHENNK
Translated Amino Acid sequence (All Frames)	Frame A: fyflynqnyinkyiiLQFKMYSPEDLEYREQQRLSKALQGKLGGASSRKSWAPVVTGK PQTHSAPVNSSFASISISDKHHESPSTTTSSPSTSSGVDNSSIYPGAIVEDKVKSQEAHR LKKMGLSTEEDESTAHIPAYTSLNSSSSSTISKSNSNQSLAKETSSNNLLQYQSPVRVAS STSSENLVDSASIMNNVDSHTSEEKMKQEAKRLERWGLKINSPTATSXSTTSPPVSSTTP VAPVTPTEQSVPQSPFSTGAAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTSN RDIVISILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNELVKDXAHENNK Frame B: fifyttktiiniykynynlkcthqkiniennnvvkhykvnvvqaqenhghqlqvn hkhivhqlivhlhqfqfqisttnhhqqqhhhhqhhqvliivqsiqvqslriklnhkkhtv krwvfqlkkmnqplifqhilhihhphppsqrviaikalqrkpvvttscninhqlepa qhhlrisivlplttliliplkrkskrqrdkdgvrlthqllpxqalphhqslvplr lhqlqpnnlyhnlhsqlvlpslsikviaisqsllpnnslivsfsllnplnksfkrkpli vilsslfswi*rnlqtlvlslqlpqclsislkmlvnslvlsmnlktlltkiik Frame C: lffiqpklykiyiniitinvltrrfrirtttfksitrirwcklkkimgtscnrt tntcts*ficinfnfrapritinnniitiniirc**fnlsrcnrgsitrstpf ekdgsfnrrinrsyssiyfikfiilihhlkeqskpckgnqqplaisitsssql niiefsrcfhyeqrfsylreneargkeirkmgfkdltncylxkhylttslyhsg ctsdsnrticttisilnwccrlcqsksqspnryyptipsyrslcirtnhskenls ychlyshgfskgicklwydslfnypnvfrylskcwtrwccqisrxcsrk**n
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFG704 (SFG704Q) /CSM/SF/SFG7-A/SFG704Q.Seq.d/ 1538 0.0 CFA872 (CFA872Q) /CSM/CF/CFA8-C/CFA872Q.Seq.d/ 1532 0.0 SFC268 (SFC268Q) /CSM/SF/SFC2-C/SFC268Q.Seq.d/ 1530 0.0 SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/ 1267 0.0 SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/ 1267 0.0 AFO548 (AFO548Q) /CSM/AF/AFO5-B/AFO548Q.Seq.d/ 1207 0.0 CHD103 (CHD103Q) /CSM/CH/CHD1-A/CHD103Q.Seq.d/ 1183 0.0 VFL163 (VFL163Q) /CSM/VF/VFL1-C/VFL163Q.Seq.d/ 1154 0.0 SLA529 (SLA529Q) /CSM/SL/SLA5-B/SLA529Q.Seq.d/ 1138 0.0 VFM511 (VFM511Q) /CSM/VF/VFM5-A/VFM511Q.Seq.d/ 1136 0.0
own update	2002.10. 9
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AF222688\|AF222688.1 Dictyostelium discoideum dynacortin (dct) mRNA, complete cds. 1538 0.0 3 AC115592\|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence. 36 0.37 10 AC122688\|AC122688.5 Homo sapiens 12 BAC RP11-158L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 46 1.0 1 AC116960\|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 36 1.2 11 AP006101\|AP006101.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181. 36 1.3 11 AL161564\|AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64. 36 2.6 5 AP003189\|AP003189.2 Clostridium perfringens str. 13 DNA, complete genome, section 5/10. 36 3.1 7 BD193635\|BD193635.1 Enterococcus faecialis polynucleotides and polypeptides. 38 4.0 2 BX119902\|BX119902.4 Zebrafish DNA sequence from clone CH211-137I24 in linkage group 5. 44 4.1 1 BX927172\|BX927172.2 Zebrafish DNA sequence * SEQUENCING IN PROGRESS * from clone DKEY-158J20. 44 4.1 1
dna update	2004. 2.21
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AF222688_1(AF222688\|pid:none) Dictyostelium discoideum dynacorti... 513 e-144 FM992688_1247(FM992688\|pid:none) Candida dubliniensis CD36 chrom... 35 5.9 EU565733_1(EU565733\|pid:none) Uncultured soil bacterium clone gl... 35 5.9 CP000090_1303(CP000090\|pid:none) Ralstonia eutropha JMP134 chrom... 34 7.6
protein update	2009. 7. 3
PSORT	psg: 0.75 gvh: 0.47 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 28.0 %: nuclear 8.0 %: cytoskeletal 8.0 %: Golgi 4.0 %: vacuolar 4.0 %: vesicles of secretory system >> prediction for SFG704 is cyt
5' end seq. ID	SFG704F
5' end seq.	>SFG704F.Seq TTTTATTTTTTATACAACCAAAACTATATAAATAAATATATATAAATATAATTACAATTT AAAATGTACTCACCAGAAGATTTAGAATATAGAGAACAACAACGTTTAAGTAAAGCATTA CAAGGTAAATTAGGTGGTGCAAGCTCAAGAAAATCATGGGCACCAGTTGTAACAGGTAAA CCACAAACACATAGTGCACCAGTTAATAGTTCATTTGCATCAATTTCAATTTCAGATAAG CACCACGAATCACCATCAACAACAACATCATCACCATCAACATCATCAGGTGTTGATAAT AGTTCAATCTATCCAGGTGCAATCGTTGAGGATAAAGTTAAATCACAAGAAGCACACCGT TTGAAAAAGATGGGTCTTTCAACTGAAGAAGATGAATCAACCGCTCATATTCCAGCATAT ACTTCATTAAATTCATCATCCTCATCCACCATCTCAAAGAGTAATAGCAATCAAAGCCTT GCAAAGGAAACCAGTAGTAACAACCTCTTGCAATATCAATCACCAGTTAGAGTAGCCAGC TCAACATCATCTGAGAATTTAGTCGATAGTGCTTCCATTATGAACAACGTTGATTCTCAT ACCTCT----------
Length of 5' end seq.	606
3' end seq. ID	SFG704Z
3' end seq.	>SFG704Z.Seq ----------TAGCAATCAAAGCCTTGCAAAGGAAACCAGTAGTANCANCCTCTTGCAAT ATCAATCACCAGTTAGAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATAGTGCTT CCATTATGAACAACGTTGATTCTCATACCTCTGAAGAGAAAATGAAGCAAGAGGCAAAGA GATTAGAAAGATGGGGTTTAAAGATTAACTCACCAACTGCTACCTCANCAAGCACTACCT CACCACCAGTCTCTAGTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAATCTGTAC CACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAATCTCC CAATCGCTACTACCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCGTTAAAC AAATCATTCAAAAGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAG TAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATA TCTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGACNCTGCTC ACGAAAATAATAAAAT
Length of 3' end seq.	606
Connected seq. ID	SFG704P
Connected seq.	>SFG704P.Seq TTTTATTTTTTATACAACCAAAACTATATAAATAAATATATATAAATATAATTACAATTT AAAATGTACTCACCAGAAGATTTAGAATATAGAGAACAACAACGTTTAAGTAAAGCATTA CAAGGTAAATTAGGTGGTGCAAGCTCAAGAAAATCATGGGCACCAGTTGTAACAGGTAAA CCACAAACACATAGTGCACCAGTTAATAGTTCATTTGCATCAATTTCAATTTCAGATAAG CACCACGAATCACCATCAACAACAACATCATCACCATCAACATCATCAGGTGTTGATAAT AGTTCAATCTATCCAGGTGCAATCGTTGAGGATAAAGTTAAATCACAAGAAGCACACCGT TTGAAAAAGATGGGTCTTTCAACTGAAGAAGATGAATCAACCGCTCATATTCCAGCATAT ACTTCATTAAATTCATCATCCTCATCCACCATCTCAAAGAGTAATAGCAATCAAAGCCTT GCAAAGGAAACCAGTAGTAACAACCTCTTGCAATATCAATCACCAGTTAGAGTAGCCAGC TCAACATCATCTGAGAATTTAGTCGATAGTGCTTCCATTATGAACAACGTTGATTCTCAT ACCTCT----------TAGCAATCAAAGCCTTGCAAAGGAAACCAGTAGTANCANCCTCT TGCAATATCAATCACCAGTTAGAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATA GTGCTTCCATTATGAACAACGTTGATTCTCATACCTCTGAAGAGAAAATGAAGCAAGAGG CAAAGAGATTAGAAAGATGGGGTTTAAAGATTAACTCACCAACTGCTACCTCANCAAGCA CTACCTCACCACCAGTCTCTAGTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAAT CTGTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCA ATCTCCCAATCGCTACTACCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCG TTAAACAAATCATTCAAAAGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGG ATTTAGTAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTT TCGATATCTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGACN CTGCTCACGAAAATAATAAAAT
Length of connected seq.	1212
Full length Seq ID	SFG704E
Full length Seq.	>SFG704E.Seq TTTTATTTTTTATACAACCAAAACTATATAAATAAATATATATAAATATAATTACAATTT AAAATGTACTCACCAGAAGATTTAGAATATAGAGAACAACAACGTTTAAGTAAAGCATTA CAAGGTAAATTAGGTGGTGCAAGCTCAAGAAAATCATGGGCACCAGTTGTAACAGGTAAA CCACAAACACATAGTGCACCAGTTAATAGTTCATTTGCATCAATTTCAATTTCAGATAAG CACCACGAATCACCATCAACAACAACATCATCACCATCAACATCATCAGGTGTTGATAAT AGTTCAATCTATCCAGGTGCAATCGTTGAGGATAAAGTTAAATCACAAGAAGCACACCGT TTGAAAAAGATGGGTCTTTCAACTGAAGAAGATGAATCAACCGCTCATATTCCAGCATAT ACTTCATTAAATTCATCATCCTCATCCACCATCTCAAAGAGTAATAGCAATCAAAGCCTT GCAAAGGAAACCAGTAGTAACAACCTCTTGCAATATCAATCACCAGTTAGAGTAGCCAGC TCAACATCATCTGAGAATTTAGTCGATAGTGCTTCCATTATGAACAACGTTGATTCTCAT ACCTCTGAAGAGAAAATGAAGCAAGAGGCAAAGAGATTAGAAAGATGGGGTTTAAAGATT AACTCACCAACTGCTACCTCANCAAGCACTACCTCACCACCAGTCTCTAGTACCACTCCG GTTGCACCAGTGACTCCAACCGAACAATCTGTACCACAATCTCCATTCTCAACTGGTGCT GCCGTCTCTGTCAATCAAAGTCATAGCAATCTCCCAATCGCTACTACCCAACAATTCCTT GATCGTATCGTTCTCTCTGCTAAATCCGTTAAACAAATCATTCAAAAGAAAACCTCTAAT CGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAAGGAATCTGCAAACTTTGGTATG ACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTCTCAAAATGCTGGTAAACTCGCT GGTGCTGTCAATGAATTAGTTAAAGACNCTGCTCACGAAAATAATAAAAT
Length of full length seq.	1070

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas