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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFI337
Library AF
(Link to library)
Clone ID AFI337
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFI337P
(Link to Original site)
Representative DNA sequence 
>AFI337 (AFI337Q) /CSM/AF/AFI3-B/AFI337Q.Seq.d/
ATTTTTTTTTTATATNGGATTTTTAACACACCAAATATATATTTATATTTATATATTTAT
ATATTTTTTTTTATTTTATTTTCACACCCTATTCTATATAAATTAATTTTTTTTTTTTTT
XXXXXXXXXXACAAGCATTTGCCCGTTTATNTGCTATCTATGGTGGTACATATATGCTTA
ATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTATTAAAGTTACATCTG
AAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAG
TTCAAAAGAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGTCCAATTCCATCTG
CTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAAAACAAGTTAAACGTCAAT
CAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAATACA
TTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGAATTAGCACCAGCTT
ACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGATTTCATTGAACCAA
TTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCATATGATGCTACCTCTCACT
TTGAAACCACTTGTGAAGATGTCATGGATATGTACAAGAGAATCACTGGTAAAGATTTAG
TTACTCACTGTTCATCCAAATATTTCTTAAACAACAAG
sequence update 2001. 6. 2
Translated Amino Acid sequence 
IFFLYXIFNTPNIYLYLYIYIFFFILFSHPILYKLIFFFF---

---QAFARLXAIYGGTYMLNKPIENIVFDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKV
QKKGKIIRSICILNGPIPSADKKFESLQIIIPQKQVKRQSDMYVGVMSSAHCVCPKGKYI
AIVSATVETNEPEKELAPAYALLGPIQEKFVYISDFIEPIADGTADNVFISKSYDATSHF
ETTCEDVMDMYKRITGKDLVTHCSSKYFLNNK
Translated Amino Acid sequence (All Frames) 
Frame A:
IFFLYXIFNTPNIYLYLYIYIFFFILFSHPILYKLIFFFF---

---tsicpfxcylwwyiya**tn*kycfr*rkeny*syi*r*ncnm**ncl*siifpk*s
sker*nysfnlyfewsnsic**ei*itpnhyptkts*tsiryvrwcyvirslclskg*ih
chrfshc*nq*treristslrfirsnsreiclyf*fh*tnc*wycrqcfhlkii*cylsl
*nhl*rchgyvqenhw*rfsyslfiqiflkqq

Frame B:
fffyxgflthqiyiyiyifiyfflfyfhtlfyin*ffff---

---QAFARLXAIYGGTYMLNKPIENIVFDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKV
QKKGKIIRSICILNGPIPSADKKFESLQIIIPQKQVKRQSDMYVGVMSSAHCVCPKGKYI
AIVSATVETNEPEKELAPAYALLGPIQEKFVYISDFIEPIADGTADNVFISKSYDATSHF
ETTCEDVMDMYKRITGKDLVTHCSSKYFLNNK

Frame C:
fffixdf*htkyififiylyiffyfiftpysi*inffff---

---khlpvyxlsmvvhiclinqlkilfsmkkrkllklhlkvkl*hviklfvihhisqikf
krkvklfvqfvf*mvqfhllirnlnhskslshknklnvnqictlvlchplivsvqrvntl
psfqpllkpmnqrkn*hqltly*vqfkrnlsiflislnqllmvlptmfssqnhmmlpltl
kplvkmswictreslvki*lltvhpnis*tt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFI337 (AFI337Q) /CSM/AF/AFI3-B/AFI337Q.Seq.d/                       1239   0.0
AFL838 (AFL838Q) /CSM/AF/AFL8-B/AFL838Q.Seq.d/                       1219   0.0
SFJ795 (SFJ795Q) /CSM/SF/SFJ7-D/SFJ795Q.Seq.d/                       1207   0.0
SFJ449 (SFJ449Q) /CSM/SF/SFJ4-C/SFJ449Q.Seq.d/                       1207   0.0
SFI510 (SFI510Q) /CSM/SF/SFI5-A/SFI510Q.Seq.d/                       1207   0.0
SFE141 (SFE141Q) /CSM/SF/SFE1-B/SFE141Q.Seq.d/                       1207   0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/                       1207   0.0
CHD258 (CHD258Q) /CSM/CH/CHD2-C/CHD258Q.Seq.d/                       1207   0.0
CHB577 (CHB577Q) /CSM/CH/CHB5-D/CHB577Q.Seq.d/                       1207   0.0
CFC760 (CFC760Q) /CSM/CF/CFC7-C/CFC760Q.Seq.d/                       1207   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BW478676|BW478676.1 Ciona intestinalis cDNA, clone:cima018l21, 5'end, single read.    48   2e-08  4
BI315670|BI315670.1 saf75f12.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-2184 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   1e-07  2
AI437629|AI437629.1 sa37e09.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1505 5' similar to TR:O24653 O24653 GDI2. ;, mRNA sequence.    62   1e-07  2
AJ005836|AJ005836.1 Cicer arietinum mRNA for GDP dissociation inhibitor (gdi).    38   9e-06  3
BG790353|BG790353.1 sae68c10.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-3212 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   1e-05  1
BU964562|BU964562.1 sas99a12.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-12311 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   1e-05  1
BE800797|BE800797.1 sq98c12.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-1199 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   1e-05  1
AW397479|AW397479.1 sg79d05.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-2626 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   1e-05  1
BW283320|BW283320.1 Ciona intestinalis cDNA, clone:cigd021j20, 5' end, single read.    48   1e-05  2
CA784798|CA784798.1 sat89e06.y1 Gm-c1062 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1062-5964 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    44   4e-05  3
dna update 2004. 6.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF676817_1(EF676817|pid:none) Picea sitchensis clone WS02753_I09...   234   3e-60
EF085049_1(EF085049|pid:none) Picea sitchensis clone WS0297_P09 ...   234   3e-60
AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ...   229   7e-59
BT071197_1(BT071197|pid:none) Picea sitchensis clone WS0279_A10 ...   229   9e-59
BC095329_1(BC095329|pid:none) Danio rerio GDP dissociation inhib...   228   1e-58
AF130987_1(AF130987|pid:none) Rattus norvegicus RAB GDP dissocia...   228   2e-58
(O97555) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   228   2e-58
(P50398) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   228   2e-58
X74402_1(X74402|pid:none) R.norvegicus rab GDI alpha mRNA.            228   2e-58
(P21856) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   227   3e-58
protein update 2009. 4.23
PSORT 

 psg: 1.01  gvh: 0.63  alm: 0.30  top: 0.60  tms: 0.07  mit: 0.29  mip: 0.08
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.02  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for AFI337 is nuc
5' end seq. ID AFI337F
5' end seq. 
>AFI337F.Seq
ATTTTTTTTTTATATNGGATTTTTAACACACCAAATATATATTTATATTTATATATTTAT
ATATTTTTTTTTATTTTATTTTCACACCCTATTCTATATAAATTAATTTTTTTTTTTTTT
----------
Length of 5' end seq. 120
3' end seq. ID AFI337Z
3' end seq. 
>AFI337Z.Seq
----------ACAAGCATTTGCCCGTTTATNTGCTATCTATGGTGGTACATATATGCTTA
ATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTATTAAAGTTACATCTG
AAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAG
TTCAAAAGAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGTCCAATTCCATCTG
CTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAAAACAAGTTAAACGTCAAT
CAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAATACA
TTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGAATTAGCACCAGCTT
ACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGATTTCATTGAACCAA
TTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCATATGATGCTACCTCTCACT
TTGAAACCACTTGTGAAGATGTCATGGATATGTACAAGAGAATCACTGGTAAAGATTTAG
TTACTCACTGTTCATCCAAATATTTCTTAAACAACAAG
Length of 3' end seq. 628
Connected seq. ID AFI337P
Connected seq. 
>AFI337P.Seq
ATTTTTTTTTTATATNGGATTTTTAACACACCAAATATATATTTATATTTATATATTTAT
ATATTTTTTTTTATTTTATTTTCACACCCTATTCTATATAAATTAATTTTTTTTTTTTTT
----------ACAAGCATTTGCCCGTTTATNTGCTATCTATGGTGGTACATATATGCTTA
ATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTATTAAAGTTACATCTG
AAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAG
TTCAAAAGAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGTCCAATTCCATCTG
CTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAAAACAAGTTAAACGTCAAT
CAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAATACA
TTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGAATTAGCACCAGCTT
ACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGATTTCATTGAACCAA
TTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCATATGATGCTACCTCTCACT
TTGAAACCACTTGTGAAGATGTCATGGATATGTACAAGAGAATCACTGGTAAAGATTTAG
TTACTCACTGTTCATCCAAATATTTCTTAAACAACAAG
Length of connected seq. 748
Full length Seq ID -
Full length Seq. -
Length of full length seq. -