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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFG565
Library SF
(Link to library)
Clone ID SFG565
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13443-1
Original site URL
Representative seq. ID SFG565P
(Link to Original site)
Representative DNA sequence 
>SFG565 (SFG565Q) /CSM/SF/SFG5-C/SFG565Q.Seq.d/
GTTTTCGATTTAAAGGCCAACTACAGAATCATTTTTGAACAAGAAATTTATGACACTTTT
GAATTTCAAAAACAAAGAGATTTCTTTTTTTGCATTTGAAGGTGATTCCTGTGTTTATGG
CTTATCATTTGCTGATGTAACTGAAGCAGCTGAATTCTATGGCCAACTTTTAAATTGTAA
ACAAGGAAATATTGGTAAAACTGCTGCAATTAATCCAAATACTTCTTCAACCAAAATTAC
TGCATCAACACCAGCACCAAAAGTTGAAAAGAAAAAAGAAAAGAAAGGTTTTATGTCTAA
ATTCTTTTCATCGGAAGAGAAAGATTTGGAAATTTCAGCTCCAACCAACTTTAAACATGA
AAGTCATATTGGTTGGGATCCAGAGAATGGTTTTGATATTAAGAATATCCCACCAGATTG
GAGAAAACTTTTCCAATCTGCTGGTATTAAGAAGAGTGAATTAAAGAATGCAGAAACTGC
TCAATTCATTGTCAATATCATTGGTGAACAAATGGTTGGTGGTTCAGCTCCACCACCAAC
TCAACCAGGTAGATCAGCTCCACCAGCTCCACCATCTTCAAACCAACCAGGTAGATCAGC
TCCACCACCACCACCATCTXXXXXXXXXXCACCACCACCACCTCCACCACCACCTTCTAG
TGGTCCACCACCTCCACCACCACCAATGGCCAGTGCTCCCCCATCATCAGGAGGTGGTGG
TGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAA
GGCTGTTGATAAAACCAATCCACTCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACG
TTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGA
TGATGAAGAAGATGATGATGACGATGATGAATGGTCAGATTATTAAATTATTCTTTAACA
AAATTCAAATTCAAAAAAATCATTAAATAAAGATTTCT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
fsi*RPTTESFLNKKFMTLLNFKNKEISFFAFEGDSCVYGLSFADVTEAAEFYGQLLNCK
QGNIGKTAAINPNTSSTKITASTPAPKVEKKKEKKGFMSKFFSSEEKDLEISAPTNFKHE
SHIGWDPENGFDIKNIPPDWRKLFQSAGIKKSELKNAETAQFIVNIIGEQMVGGSAPPPT
QPGRSAPPAPPSSNQPGRSAPPPPPS---

---PPPPPPPPSSGPPPPPPPMASAPPSSGGGGASGGGRNDLLASIRSGASLKAVDKTNP
LPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDDDDEWSDY*iil*qnsnskks
lnkdf
Translated Amino Acid sequence (All Frames) 
Frame A:
vfdlkanyriifeqeiydtfefqkqrdfffci*r*flclwliic*cn*ss*ilwptfkl*
trkyw*nccn*skyffnqnycintstks*kekrkerfyv*ilfigrerfgnfssnql*t*
ksywlgsrewf*y*eyptrlektfpicwy*ee*ikecrncsihcqyhw*tngwwfssttn
str*isstsstifkptr*isstttti---

---hhhhlhhhllvvhhlhhhqwpvlphhqevvvpaaveemifwlpfvvvqvlrllikpi
hsqifkvlvmkvhvl*lil*lqlwlivevv*ekmmkkmmmtmmngqiiklffnkiqiqkn
h*ikis

Frame B:
fsi*RPTTESFLNKKFMTLLNFKNKEISFFAFEGDSCVYGLSFADVTEAAEFYGQLLNCK
QGNIGKTAAINPNTSSTKITASTPAPKVEKKKEKKGFMSKFFSSEEKDLEISAPTNFKHE
SHIGWDPENGFDIKNIPPDWRKLFQSAGIKKSELKNAETAQFIVNIIGEQMVGGSAPPPT
QPGRSAPPAPPSSNQPGRSAPPPPPS---

---ttttstttf*wsttstttngqcspiirrwwcqrrwkk*sfgfhs*wcks*gc**nqs
tprysksw**rftffs*yfscsyg*s*rwyerr**rr***r**mvrllnysltkfkfkki
ik*rf

Frame C:
frfkgqlqnhf*trnl*hf*isktkrflflhlkvipvfmayhllm*lkqlnsmanf*ivn
keilvkllqliqillqpkllhqhqhqklkrkkkrkvlclnsfhrkrkiwkfqlqptlnmk
vilvgiqrmvlilrishqigenfsnllvlrrvn*rmqkllnslsislvnkwlvvqlhhql
nqvdqlhqlhhlqtnqvdqlhhhhh---

---PPPPPPPPSSGPPPPPPPMASAPPSSGGGGASGGGRNDLLASIRSGASLKAVDKTNP
LPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDDDDEWSDY*iil*qnsnskks
lnkdf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC304 (VSC304Q) /CSM/VS/VSC3-A/VSC304Q.Seq.d/                        626   e-178
SFG565 (SFG565Q) /CSM/SF/SFG5-C/SFG565Q.Seq.d/                        626   e-178
AFG687 (AFG687Q) /CSM/AF/AFG6-D/AFG687Q.Seq.d/                        442   e-123
VFN644 (VFN644Q) /CSM/VF/VFN6-B/VFN644Q.Seq.d/                        406   e-112
CFG349 (CFG349Q) /CSM/CF/CFG3-C/CFG349Q.Seq.d/                        402   e-111
VFD730 (VFD730Q) /CSM/VF/VFD7-B/VFD730Q.Seq.d/                        398   e-110
VFA863 (VFA863Q) /CSM/VF/VFA8-C/VFA863Q.Seq.d/                        398   e-110
SSG705 (SSG705Q) /CSM/SS/SSG7-A/SSG705Q.Seq.d/                        398   e-110
SLH341 (SLH341Q) /CSM/SL/SLH3-B/SLH341Q.Seq.d/                        398   e-110
SLH135 (SLH135Q) /CSM/SL/SLH1-B/SLH135Q.Seq.d/                        398   e-110
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF305060|AF305060.1 Dictyostelium discoideum Wiscott-Aldrich syndrome protein (wasA) gene, complete cds.   626   0.0    8
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    70   6e-08  1
Z99161|Z99161.1 S.pombe chromosome I cosmid c11G7.                 44   0.010  4
AC023415|AC023415.3 Homo sapiens chromosome 3 clone RP11-200I19 map 3, WORKING DRAFT SEQUENCE, 27 unordered pieces.    50   0.060  1
BQ258443|BQ258443.1 fz79g06.y1 Sugano SJD adult male Danio rerio cDNA clone 5914930 5' similar to SW:ROA1_HUMAN P09651 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 ;, mRNA sequence.    50   0.060  1
AC131148|AC131148.2 Homo sapiens clone RP11-622J3, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    50   0.060  1
AC092933|AC092933.21 Homo sapiens 3 BAC RP11-200I19 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    50   0.060  1
AC104134|AC104134.4 Homo sapiens BAC clone RP11-525L16 from 2, complete sequence.    46   0.088  3
BZ698223|BZ698223.1 PUCDB83TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa118N22, DNA sequence.    48   0.24   1
AL260282|AL260282.1 Tetraodon nigroviridis genome survey sequence PUC-Ori end of clone  057L17 of library G from Tetraodon nigroviridis.    48   0.24   1
dna update 2003.12.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A...   254   4e-77
AC117076_18(AC117076|pid:none) Dictyostelium discoideum chromoso...   107   5e-22
BC066424_1(BC066424|pid:none) Danio rerio Wiskott-Aldrich syndro...    78   2e-13
(P42768) RecName: Full=Wiskott-Aldrich syndrome protein;        ...    79   3e-13
AX167535_1(AX167535|pid:none) Sequence 35 from Patent WO0144292....    79   3e-13
AF115549_1(AF115549|pid:none) Homo sapiens Wiskott-Aldrich Syndr...    79   3e-13
BC158677_1(BC158677|pid:none) Rattus norvegicus Wiskott-Aldrich ...    79   3e-13
(P70315) RecName: Full=Wiskott-Aldrich syndrome protein homolog;...    79   3e-13
BC087802_1(BC087802|pid:none) Xenopus tropicalis Wiskott-Aldrich...    75   4e-12
BC129739_1(BC129739|pid:none) Xenopus laevis hypothetical protei...    75   4e-12
protein update 2009. 5.24
PSORT 

 psg: 0.80  gvh: 0.61  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for SFG565 is nuc
5' end seq. ID SFG565F
5' end seq. 
>SFG565F.Seq
GTTTTCGATTTAAAGGCCAACTACAGAATCATTTTTGAACAAGAAATTTATGACACTTTT
GAATTTCAAAAACAAAGAGATTTCTTTTTTTGCATTTGAAGGTGATTCCTGTGTTTATGG
CTTATCATTTGCTGATGTAACTGAAGCAGCTGAATTCTATGGCCAACTTTTAAATTGTAA
ACAAGGAAATATTGGTAAAACTGCTGCAATTAATCCAAATACTTCTTCAACCAAAATTAC
TGCATCAACACCAGCACCAAAAGTTGAAAAGAAAAAAGAAAAGAAAGGTTTTATGTCTAA
ATTCTTTTCATCGGAAGAGAAAGATTTGGAAATTTCAGCTCCAACCAACTTTAAACATGA
AAGTCATATTGGTTGGGATCCAGAGAATGGTTTTGATATTAAGAATATCCCACCAGATTG
GAGAAAACTTTTCCAATCTGCTGGTATTAAGAAGAGTGAATTAAAGAATGCAGAAACTGC
TCAATTCATTGTCAATATCATTGGTGAACAAATGGTTGGTGGTTCAGCTCCACCACCAAC
TCAACCAGGTAGATCAGCTCCACCAGCTCCACCATCTTCAAACCAACCAGGTAGATCAGC
TCCACCACCACCACCATCT----------
Length of 5' end seq. 619
3' end seq. ID SFG565Z
3' end seq. 
>SFG565Z.Seq
----------CACCACCACCACCTCCACCACCACCTTCTAGTGGTCCACCACCTCCACCA
CCACCAATGGCCAGTGCTCCCCCATCATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGA
AATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAAT
CCACTCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTA
GCTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAGATGATGAT
GACGATGATGAATGGTCAGATTATTAAATTATTCTTTAACAAAATTCAAATTCAAAAAAA
TCATTAAATAAAGATTTCT
Length of 3' end seq. 369
Connected seq. ID SFG565P
Connected seq. 
>SFG565P.Seq
GTTTTCGATTTAAAGGCCAACTACAGAATCATTTTTGAACAAGAAATTTATGACACTTTT
GAATTTCAAAAACAAAGAGATTTCTTTTTTTGCATTTGAAGGTGATTCCTGTGTTTATGG
CTTATCATTTGCTGATGTAACTGAAGCAGCTGAATTCTATGGCCAACTTTTAAATTGTAA
ACAAGGAAATATTGGTAAAACTGCTGCAATTAATCCAAATACTTCTTCAACCAAAATTAC
TGCATCAACACCAGCACCAAAAGTTGAAAAGAAAAAAGAAAAGAAAGGTTTTATGTCTAA
ATTCTTTTCATCGGAAGAGAAAGATTTGGAAATTTCAGCTCCAACCAACTTTAAACATGA
AAGTCATATTGGTTGGGATCCAGAGAATGGTTTTGATATTAAGAATATCCCACCAGATTG
GAGAAAACTTTTCCAATCTGCTGGTATTAAGAAGAGTGAATTAAAGAATGCAGAAACTGC
TCAATTCATTGTCAATATCATTGGTGAACAAATGGTTGGTGGTTCAGCTCCACCACCAAC
TCAACCAGGTAGATCAGCTCCACCAGCTCCACCATCTTCAAACCAACCAGGTAGATCAGC
TCCACCACCACCACCATCT----------CACCACCACCACCTCCACCACCACCTTCTAG
TGGTCCACCACCTCCACCACCACCAATGGCCAGTGCTCCCCCATCATCAGGAGGTGGTGG
TGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAA
GGCTGTTGATAAAACCAATCCACTCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACG
TTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGA
TGATGAAGAAGATGATGATGACGATGATGAATGGTCAGATTATTAAATTATTCTTTAACA
AAATTCAAATTCAAAAAAATCATTAAATAAAGATTTCT
Length of connected seq. 988
Full length Seq ID -
Full length Seq. -
Length of full length seq. -