>SFG479 (SFG479Q) /CSM/SF/SFG4-D/SFG479Q.Seq.d/
TATAAGTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGGGGNCNTTT
TTTTTNTTAAAAAAAAAAAAANNAANGGGTTTTNNNANTTTTTNNCCCCCCCCCCCNNNN
NAAAAAXXXXXXXXXXTACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCC
TTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGC
TCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAA
AATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACA
TTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTG
CGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTC
ATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCA
CTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGAC
CTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTA
CCAGATATTGTAGTTCAAAGAGTATTAATTAGACATGGTTTCAGTCATGATA

YKFGKKKKKKKKKKKKXGXFFXLKKKKXXGFXXFXPPPPXXK---

---PIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDI
HKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISK
QVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNLPDI
VVQRVLIRHGFSHD

Frame A:
YKFGKKKKKKKKKKKKXGXFFXLKKKKXXGFXXFXPPPPXXK---

---yqfmsmqqvvvslhpffnqklfgildyhvlnqlmalvinlvylhwelagsygevkmt
ftriwysmstilvaicqhfh*ishvqvvk*yastitfcamvvvdipqfiklv*imvfsfp
sklkntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqie*eievgklhpilyqtyqi
l*fkey*ldmvsvmi

Frame B:
islekkkkkkkkkkkkxgxffx*kkkxxxvxxxfxpppxxk---

---tnscrcskwwfrctlsstrnclgf*tttc*in*wlws*iwsisigswlgrmer*k*h
sqgfgircqlswwqyanifiefltsrwsnsmpvl*lfapws*wiyrsssslsrswyfhfq
as*ktryf*ycl*wywctsrcmleiekrckskiqsl*pfr*nek*rlancilystkltry
cssksin*twfqs*

Frame C:
*vwkkkkkkkkkkkkxgxxffxkkkkxxgfxxfxxpppxxk---

---PIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDI
HKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISK
QVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNLPDI
VVQRVLIRHGFSHD

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB722 (SLB722Q) /CSM/SL/SLB7-A/SLB722Q.Seq.d/                       1142   0.0
SFL288 (SFL288Q) /CSM/SF/SFL2-D/SFL288Q.Seq.d/                       1142   0.0
SFK622 (SFK622Q) /CSM/SF/SFK6-A/SFK622Q.Seq.d/                       1142   0.0
SFH461 (SFH461Q) /CSM/SF/SFH4-C/SFH461Q.Seq.d/                       1142   0.0
SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/                       1142   0.0
SFG479 (SFG479Q) /CSM/SF/SFG4-D/SFG479Q.Seq.d/                       1142   0.0
SFE561 (SFE561Q) /CSM/SF/SFE5-C/SFE561Q.Seq.d/                       1142   0.0
SFD593 (SFD593Q) /CSM/SF/SFD5-D/SFD593Q.Seq.d/                       1142   0.0
SFD334 (SFD334Q) /CSM/SF/SFD3-B/SFD334Q.Seq.d/                       1142   0.0
SFC714 (SFC714Q) /CSM/SF/SFC7-A/SFC714Q.Seq.d/                       1142   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP11A1 5' sequence, mRNA sequence.    66   1e-09  2
CF811515|CF811515.1 NA716 cDNA non acclimated Bluecrop library Vaccinium corymbosum cDNA 5', mRNA sequence.    68   3e-08  2
AF352732|AF352732.1 Nicotiana tabacum glutamate decarboxylase isozyme 3 mRNA, complete cds.    58   2e-07  2
CD008053|CD008053.1 VVB082D05_335234 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB082D05 5, mRNA sequence.    64   5e-07  2
CD006712|CD006712.1 VVB066D06_332552 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB066D06 5, mRNA sequence.    64   5e-07  2
CD719214|CD719214.1 VVB158G03_410335 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB158G03 5, mRNA sequence.    64   6e-07  2
CA813481|CA813481.1 CA48LN10IF-E8 Cabernet Sauvignon Leaf - CA48LN Vitis vinifera cDNA clone CA48LN10IF-E8 5', mRNA sequence.    64   7e-07  2
CB341828|CB341828.2 CA32EN0002_IIIbF_E01 Cabernet Sauvignon Leaf - CA32EN Vitis vinifera cDNA clone CA32EN0002_IIIbF_E01 5', mRNA sequence.    64   7e-07  2
AW622257|AW622257.1 EST313055 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX14P1 5', mRNA sequence.    66   7e-07  1
CF517073|CF517073.1 CAP0004_IIIF_E05 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0004_IIIF_E05 5', mRNA sequence.    64   3e-06  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...   289   5e-77
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom...   286   4e-76
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp...   283   5e-75
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   282   6e-75
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345...   280   4e-74
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...   271   1e-71
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n...   264   2e-69
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul...   261   1e-68
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320...   261   1e-68
AJ749949_1722(AJ749949|pid:none) Francisella tularensis subsp. t...   258   1e-67

 psg: 0.31  gvh: 0.40  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.70  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for SFG479 is nuc

>SFG479F.Seq
TATAAGTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGGGGNCNTTT
TTTTTNTTAAAAAAAAAAAAANNAANGGGTTTTNNNANTTTTTNNCCCCCCCCCCCNNNN
NAAAAANNNNNNNNNN

>SFG479Z.Seq
----------TACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCCTTTCTT
CAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGT
CATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGAC
ATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCA
TTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCAT
GGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCC
AAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCA
GGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCA
GATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGAT
ATTGTAGTTCAAAGAGTATTAATTAGACATGGTTTCAGTCATGATA

>SFG479P.Seq
TATAAGTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGGGGNCNTTT
TTTTTNTTAAAAAAAAAAAAANNAANGGGTTTTNNNANTTTTTNNCCCCCCCCCCCNNNN
NAAAAA----------TACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCC
TTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGC
TCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAA
AATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACA
TTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTG
CGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTC
ATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCA
CTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGAC
CTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTA
CCAGATATTGTAGTTCAAAGAGTATTAATTAGACATGGTTTCAGTCATGATA