SFG464
Library SF
(Link to library)
Clone ID SFG464
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15632-1
Original site URL
Representative seq. ID SFG464Z
(Link to Original site)
Representative DNA sequence
>SFG464 (SFG464Q) /CSM/SF/SFG4-C/SFG464Q.Seq.d/
XXXXXXXXXXTTCTTTTTGGCAGGCGGTGTATTAATCATTTGTTTACTATGTTTCTTGGT
TTTATTGCAGTTACCAATTACAAAGTACTATTTAGCAAATTTCGAAGCTTCAAAATTGAA
GGAGAATGGTAGTGTCAACGGCATCGAAAGTGGTGATGGTGATGCCAAACCAAAGAAATC
TGCACGTCAATGGATGGGCGAGCTTTTAAATATCCTCAAAAAGGTTTGGAGAGAGGCATT
GGTTGTTTTCACAGTTTTCTTTACTACACTCTCAATTTTCCCTGGCTTAACTCAACTTAT
TCAAACAAGTAATGAACATCAGTTATCATCCGATTGGTTTATCATTGTTTTCTTTTCAAT
CTTTATGGTTGGTGATTTCATTGGAAGAACCGTTCCAAAATGGTTTATCATTTTCACTCC
TTCAAATCTTTGGATTCCAACTTTCCTTCGTCTTGCCTTCTTCCCATTATTTGCACTTTG
TATTAAACCTTTAGTATTTAATAATAATGCTTGGTATTTCGTTTTTATGTTTATTTTTTC
AATTTCAAATGGTTATTGTGGAACACTTGCAATGATTTTTGGTCCAACAAAAGCTGAAGA
ACATGAAAAAGAATATGCAGGAATTACTTATGTCATTCTTTTTAAATTTTGGTATTTGGG
TATCAACTCATTTGCATTTTTATTAAG
sequence update 2001. 6. 1
Translated Amino Acid sequence
---FLAGGVLIICLLCFLVLLQLPITKYYLANFEASKLKENGSVNGIESGDGDAKPKKSA
RQWMGELLNILKKVWREALVVFTVFFTTLSIFPGLTQLIQTSNEHQLSSDWFIIVFFSIF
MVGDFIGRTVPKWFIIFTPSNLWIPTFLRLAFFPLFALCIKPLVFNNNAWYFVFMFIFSI
SNGYCGTLAMIFGPTKAEEHEKEYAGITYVILFKFWYLGINSFAFLL


Translated Amino Acid sequence (All Frames)
Frame A:
---sfwqavy*sfvyyvswfycsyqlqsti*qisklqn*rrmvvstaskvvmvmpnqrnl
hvngwasf*isskrfgerhwlfsqfsllhsqfsla*lnlfkqvmnisyhpiglslfsfqs
lwlvisleepfqnglsfsllqifgfqlsfvlpsshylhfvlnl*yliimlgisflclffq
fqmvivehlq*flvqqklknmkknmqellmsfflnfgiwvsthlhfy*


Frame B:
---lfgrrcinhlftmflgfiavtnykvlfskfrsfkiegew*cqrhrkw*w*cqtkeic
tsmdgrafkypqkglergigcfhsflyytlnfpwlnstysnk**tsviirlvyhcflfnl
ygw*fhwknrskmvyhfhsfksldsnfpsscllpiictly*tfsi***clvfrfyvyffn
fkwllwntcndfwsnks*rt*kricrnylchsf*ilvfgyqlicifik


Frame C:
---FLAGGVLIICLLCFLVLLQLPITKYYLANFEASKLKENGSVNGIESGDGDAKPKKSA
RQWMGELLNILKKVWREALVVFTVFFTTLSIFPGLTQLIQTSNEHQLSSDWFIIVFFSIF
MVGDFIGRTVPKWFIIFTPSNLWIPTFLRLAFFPLFALCIKPLVFNNNAWYFVFMFIFSI
SNGYCGTLAMIFGPTKAEEHEKEYAGITYVILFKFWYLGINSFAFLL


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFG464 (SFG464Q) /CSM/SF/SFG4-C/SFG464Q.Seq.d/ 1342 0.0
CHD286 (CHD286Q) /CSM/CH/CHD2-D/CHD286Q.Seq.d/ 1227 0.0
AFL111 (AFL111Q) /CSM/AF/AFL1-A/AFL111Q.Seq.d/ 1189 0.0
SFD805 (SFD805Q) /CSM/SF/SFD8-A/SFD805Q.Seq.d/ 1051 0.0
SFB128 (SFB128Q) /CSM/SF/SFB1-B/SFB128Q.Seq.d/ 1039 0.0
AFJ564 (AFJ564Q) /CSM/AF/AFJ5-C/AFJ564Q.Seq.d/ 835 0.0
SFB328 (SFB328Q) /CSM/SF/SFB3-B/SFB328Q.Seq.d/ 486 e-136
SSI319 (SSI319Q) /CSM/SS/SSI3-A/SSI319Q.Seq.d/ 410 e-113
SSH183 (SSH183Q) /CSM/SS/SSH1-D/SSH183Q.Seq.d/ 202 5e-51
SLK285 (SLK285Q) /CSM/SL/SLK2-D/SLK285Q.Seq.d/ 155 1e-36

own update 2002.10. 9
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 36 9e-05 19
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 32 0.002 14
AL960738|AL960738.2 Xenopus tropicalis EST, clone TGas122i12 3'. 40 0.006 2
Z72501|Z72501.1 Caenorhabditis elegans cosmid C04C11. 34 0.007 5
AC006844|AC006844.1 Caenorhabditis elegans clone Y108G3Y, WORKING DRAFT SEQUENCE, 4 unordered pieces. 38 0.019 10
AC092593|AC092593.2 Homo sapiens BAC clone RP11-68D16 from 4, complete sequence. 38 0.024 9
AL590613|AL590613.6 Human DNA sequence from clone RP11-164G6 on chromosome 6. 32 0.027 9
AP001331|AP001331.1 Homo sapiens genomic DNA, chromosome 8q23, clone:KB1153C10. 36 0.031 6
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence. 34 0.049 10
AP004183|AP004183.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1221_H04. 44 0.10 5
dna update 2003.12.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC161579_1(BC161579|pid:none) Xenopus tropicalis solute carrier ... 79 2e-13
AF029358_1(AF029358|pid:none) Homo sapiens equilibrative nucleos... 77 4e-13
AF183397_1(AF183397|pid:none) Mus musculus equilibrative nitrobe... 75 2e-12
(O54699) RecName: Full=Equilibrative nucleoside transporter 2; A... 75 2e-12
CR388420_4(CR388420|pid:none) Zebrafish DNA sequence from clone ... 71 3e-11
AK092242_1(AK092242|pid:none) Homo sapiens cDNA FLJ34923 fis, cl... 67 6e-10
AK075422_1(AK075422|pid:none) Homo sapiens cDNA PSEC0113 fis, cl... 67 6e-10
BC025325_1(BC025325|pid:none) Homo sapiens solute carrier family... 67 6e-10
BC090184_1(BC090184|pid:none) Danio rerio zgc:110527, mRNA (cDNA... 66 8e-10
AE017342_119(AE017342|pid:none) Cryptococcus neoformans var. neo... 66 1e-09
protein update 2009. 5.24
PSORT

psg: 0.99 gvh: 0.71 alm: 0.27 top: 0.53 tms: 0.27 mit: 0.21 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
24.0 %: mitochondrial
20.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: cytoplasmic

>> prediction for SFG464 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFG464Z
3' end seq.
>SFG464Z.Seq
----------TTCTTTTTGGCAGGCGGTGTATTAATCATTTGTTTACTATGTTTCTTGGT
TTTATTGCAGTTACCAATTACAAAGTACTATTTAGCAAATTTCGAAGCTTCAAAATTGAA
GGAGAATGGTAGTGTCAACGGCATCGAAAGTGGTGATGGTGATGCCAAACCAAAGAAATC
TGCACGTCAATGGATGGGCGAGCTTTTAAATATCCTCAAAAAGGTTTGGAGAGAGGCATT
GGTTGTTTTCACAGTTTTCTTTACTACACTCTCAATTTTCCCTGGCTTAACTCAACTTAT
TCAAACAAGTAATGAACATCAGTTATCATCCGATTGGTTTATCATTGTTTTCTTTTCAAT
CTTTATGGTTGGTGATTTCATTGGAAGAACCGTTCCAAAATGGTTTATCATTTTCACTCC
TTCAAATCTTTGGATTCCAACTTTCCTTCGTCTTGCCTTCTTCCCATTATTTGCACTTTG
TATTAAACCTTTAGTATTTAATAATAATGCTTGGTATTTCGTTTTTATGTTTATTTTTTC
AATTTCAAATGGTTATTGTGGAACACTTGCAATGATTTTTGGTCCAACAAAAGCTGAAGA
ACATGAAAAAGAATATGCAGGAATTACTTATGTCATTCTTTTTAAATTTTGGTATTTGGG
TATCAACTCATTTGCATTTTTATTAAG
Length of 3' end seq. 677
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -