SFG429
Library SF
(Link to library)
Clone ID SFG429
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID SFG429P
(Link to Original site)
Representative DNA sequence
>SFG429 (SFG429Q) /CSM/SF/SFG4-B/SFG429Q.Seq.d/
CTGTTGGCCTACTGGATTTTTTCAAATTCATTTTTATTATACAAATATTAAATTCATATT
TTATTTTTTTATATATTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAATTTAAAAAN
TCNCNTTTTTTGAAAAAAAAAAXXXXXXXXXXTTGANAATGTAAANNNAANGATTNAANA
TAANNAGGTNTTNCCNNCANNNNNAACAANGTNTNANTTTTNGNTGGTAAANAATTAANA
ANATGGTNGNNCTNTTTNTNGANTTNCAAATATNCAAAAAANAATNAATTNTCCCACTTG
GTCNTCANNATTAANAAGGGTGGTANGCAAATNTTTGTCANAAACATTAACTGGTAAGAC
CATCNCTCTTGAAAGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAG
ACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAG
ATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCA
GATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCG
AAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTA
TTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTC
TCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTG
GTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTA
GTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAATAA
sequence update 2001.11.22
Translated Amino Acid sequence
llaywifsnsfllyky*ihilffyil*HFIKKKKKKKFKXSXFLKKK---

---XNVXXXIXXXXVXPXXXTXXXFXXVXN*xxgxxxxxxxnxqkxxnxptwssxlxrvv
xkxlsxtltgktixles*glr*y*kc*nkdsrqrryptrptkinfrw*tirrwsysl*lq
hskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttsh
frr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*eckn
knsrqi


Translated Amino Acid sequence (All Frames)
Frame A:
llaywifsnsfllyky*ihilffyil*HFIKKKKKKKFKXSXFLKKK---

---lxm*xxxxxixrxxxxxxqxxxfxw*xixxmvxlfxxxqixkkxxixplgxxx*xgw
xanxcxkh*lvrpsllkvegsdnienvktkiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrl
ifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvk
tkiqdk*

Frame B:
cwptgffqihfyytnikfifyffiycnis*kkkkkknlkxxxf*kkk---

---*xckxxdxx*xgxxxxxnxvxxxxgkxlxxwxxxxxxxkyxkxnxxshlvxxixkgg
xqxfvxninw*dhxs*klraqiilkmlkqrfktkkvshqtnkd*fslvnn*kmvvlslit
tfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvfhqinnvs
fspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*k
qkfktn

Frame C:
vglldffkfifiiqilnsyfiflyivtfhkkkkkkki*kxxffekk---

---XNVXXXIXXXXVXPXXXTXXXFXXVXN*xxgxxxxxxxnxqkxxnxptwssxlxrvv
xkxlsxtltgktixles*glr*y*kc*nkdsrqrryptrptkinfrw*tirrwsysl*lq
hskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttsh
frr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*eckn
knsrqi

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFG429 (SFG429Q) /CSM/SF/SFG4-B/SFG429Q.Seq.d/ 1176 0.0
SFL419 (SFL419Q) /CSM/SF/SFL4-A/SFL419Q.Seq.d/ 1080 0.0
VFI713 (VFI713Q) /CSM/VF/VFI7-A/VFI713Q.Seq.d/ 1078 0.0
CFI465 (CFI465Q) /CSM/CF/CFI4-C/CFI465Q.Seq.d/ 1078 0.0
SFJ202 (SFJ202Q) /CSM/SF/SFJ2-A/SFJ202Q.Seq.d/ 1076 0.0
SFI270 (SFI270Q) /CSM/SF/SFI2-C/SFI270Q.Seq.d/ 1076 0.0
CFF113 (CFF113Q) /CSM/CF/CFF1-A/CFF113Q.Seq.d/ 1076 0.0
AFL334 (AFL334Q) /CSM/AF/AFL3-B/AFL334Q.Seq.d/ 1076 0.0
AFD894 (AFD894Q) /CSM/AF/AFD8-D/AFD894Q.Seq.d/ 1076 0.0
AFB143 (AFB143Q) /CSM/AF/AFB1-B/AFB143Q.Seq.d/ 1076 0.0

own update 2003. 5.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 1001 0.0 2
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 993 0.0 3
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 993 0.0 2
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 597 e-174 2
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 617 e-172 2
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 585 e-170 3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 472 e-129 2
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 472 e-129 2
BJ528884|BJ528884.1 Oryzias latipes cDNA clone:MF01SSB034A18, 5' end single read. 192 2e-84 4
CF181901|CF181901.1 ISO3B1F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to PfpUB polyubiquitin 3D7, mRNA sequence. 96 3e-79 5
dna update 2003.12.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 333 6e-90
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 333 6e-90
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 333 6e-90
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos... 329 8e-89
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 329 8e-89
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar... 317 2e-85
AF517848_1(AF517848|pid:none) Griffithsia japonica isolate Gj526... 317 2e-85
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu... 317 2e-85
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 315 1e-84
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 315 1e-84
protein update 2009. 5.24
PSORT

psg: 0.68 gvh: 0.49 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.00
nuc: 0.47 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: cytoplasmic

>> prediction for SFG429 is nuc

5' end seq. ID SFG429F
5' end seq.
>SFG429F.Seq
CTGTTGGCCTACTGGATTTTTTCAAATTCATTTTTATTATACAAATATTAAATTCATATT
TTATTTTTTTATATATTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAATTTAAAAAN
TCNCNTTTTTTGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 152
3' end seq. ID SFG429Z
3' end seq.
>SFG429Z.Seq
----------TTGANAATGTAAANNNAANGATTNAANATAANNAGGTNTTNCCNNCANNN
NNAACAANGTNTNANTTTTNGNTGGTAAANAATTAANAANATGGTNGNNCTNTTTNTNGA
NTTNCAAATATNCAAAAAANAATNAATTNTCCCACTTGGTCNTCANNATTAANAAGGGTG
GTANGCAAATNTTTGTCANAAACATTAACTGGTAAGACCATCNCTCTTGAAAGTTGAGGG
CTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGA
CCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTA
CAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAAT
TTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACAT
TGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCT
CATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAA
GGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAAC
TCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAA
AACAAAAATTCAAGACAAATAA
Length of 3' end seq. 732
Connected seq. ID SFG429P
Connected seq.
>SFG429P.Seq
CTGTTGGCCTACTGGATTTTTTCAAATTCATTTTTATTATACAAATATTAAATTCATATT
TTATTTTTTTATATATTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAATTTAAAAAN
TCNCNTTTTTTGAAAAAAAAAA----------TTGANAATGTAAANNNAANGATTNAANA
TAANNAGGTNTTNCCNNCANNNNNAACAANGTNTNANTTTTNGNTGGTAAANAATTAANA
ANATGGTNGNNCTNTTTNTNGANTTNCAAATATNCAAAAAANAATNAATTNTCCCACTTG
GTCNTCANNATTAANAAGGGTGGTANGCAAATNTTTGTCANAAACATTAACTGGTAAGAC
CATCNCTCTTGAAAGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAG
ACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAG
ATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCA
GATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCG
AAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTA
TTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTC
TCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTG
GTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTA
GTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAATAA
Length of connected seq. 874
Full length Seq ID -
Full length Seq. -
Length of full length seq. -