NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFG337
Library SF
(Link to library)
Clone ID SFG337
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID SFG337Z
(Link to Original site)
Representative DNA sequence 
>SFG337 (SFG337Q) /CSM/SF/SFG3-B/SFG337Q.Seq.d/
XXXXXXXXXXAAGTNGAAGGTTTTTGAAAACCATTGAAAATNTTAAAGCCAANNATCCAA
AAAAAANAAGGTTTTCCCCCAAGATCCACCAACGTNTTATTTTCGCTGGTAAACCAATTA
AAANATGGTGGTACTCTTTCCGGACTATAACATCAAAAGGAATCCNCTCTCCACTTAGTT
TTAAGATTAANAGGTGGTATGCAAAATCTTTGTTAAAACTCTCACTGGTAAAACAATCCC
TTTAGAAGTTGAAGGTTCTGATAACATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGA
AGGTATTCCACCAGATCAACAACGTCTCATTTTTGCTGGTAAACAATTGGAAGATGGTCG
TACTCTCTCTGACTATAACATTCAAAAGGAATCAACTCTTCACTTAGTTTTAAGATTAAN
AGGTGGTATGCAAATNTTTGTTAAAACTCTCACTGGTAAAACTATCACTTTGGAAGTTGA
AGGTTCTGATAATATTGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCACC
AGATCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGA
CTACAATATTCAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAANAGGTGGTATGCA
AATCTTTGTTAAAACTCTCACTGGTAAAACAATCACTTTAGAAGTTGAAGGTTCTGATAA
CATTGAAAATGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCACCAGATCAACAAAG
ATTAATCT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---xkvfenh*kx*sqxskkxkvfpqdpptxyfrw*tn*xmvvlfpdynikrnplst*f*
d*XVVCKIFVKTLTGKTIPLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT
LSDYNIQKESTLHLVLRLXGGMQXFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPD
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLXGGMQIFVKTLTGKTITLEVEGSDNI
ENVKAKIQDKEGIPPDQQRLI
Translated Amino Acid sequence (All Frames) 
Frame A:
---sxrflktienxkaxxpkkxrfspkihqrxifagkpikxwwysfrtitskgixsplsf
kixrwyaksllklslvkqsl*klkvlitlkm*rlkfkikkvfhqinnvsfllvnnwkmvv
lsltitfkrnqlft*f*d*xvvckxllklslvklslwklkvliilkm*rlkskikkvfhq
inkd*slpvnn*kmvvlflttifkknplsi*f*d*xvvcksllklslvkqsl*klkvlit
lkmlkprskikkvfhqinkd*s


Frame B:
---vegf*kplkxlkpxiqkkxgfpprstnvlfslvnqlkxggtlsgl*hqkesxlhlvl
rlxggmqnlc*nshw*nnpfrs*rf**h*kckg*nsr*rrystrsttshfcw*tigrwsy
sl*l*hskginsslsfkixrwyanxc*nshw*nyhfgs*rf**y*kckg*npr*rrystr
stkinlcr*tirrwsysf*lqyskrihspfsfkixrwyanlc*nshw*nnhfrs*rf**h
*kc*sqdpr*rrystrstkin


Frame C:
---xkvfenh*kx*sqxskkxkvfpqdpptxyfrw*tn*xmvvlfpdynikrnplst*f*
d*XVVCKIFVKTLTGKTIPLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT
LSDYNIQKESTLHLVLRLXGGMQXFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPD
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLXGGMQIFVKTLTGKTITLEVEGSDNI
ENVKAKIQDKEGIPPDQQRLI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFG337 (SFG337Q) /CSM/SF/SFG3-B/SFG337Q.Seq.d/                       1423   0.0
SFD485 (SFD485Q) /CSM/SF/SFD4-D/SFD485Q.Seq.d/                       1265   0.0
AFK605 (AFK605Q) /CSM/AF/AFK6-A/AFK605Q.Seq.d/                       1249   0.0
SFH395 (SFH395Q) /CSM/SF/SFH3-D/SFH395Q.Seq.d/                       1245   0.0
AFB812 (AFB812Q) /CSM/AF/AFB8-A/AFB812Q.Seq.d/                       1239   0.0
CFF694 (CFF694Q) /CSM/CF/CFF6-D/CFF694Q.Seq.d/                       1237   0.0
VFK831 (VFK831Q) /CSM/VF/VFK8-B/VFK831Q.Seq.d/                       1235   0.0
SFE570 (SFE570Q) /CSM/SF/SFE5-C/SFE570Q.Seq.d/                       1235   0.0
AFH836 (AFH836Q) /CSM/AF/AFH8-B/AFH836Q.Seq.d/                       1233   0.0
AFK196 (AFK196Q) /CSM/AF/AFK1-D/AFK196Q.Seq.d/                       1231   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.  1134   0.0    4
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   916   0.0    2
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   916   0.0    2
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   632   0.0    4
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   726   0.0    4
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   541   e-162  5
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   541   e-162  5
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   541   e-162  5
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   430   e-148  5
CF181994|CF181994.1 ISO4G8F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   430   e-148  5
dna update 2003.12.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   370   e-107
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   367   e-106
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   367   e-106
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   367   e-106
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   356   e-103
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   356   e-103
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   356   e-103
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   356   e-103
AY118702_1(AY118702|pid:none) Drosophila melanogaster AT20865 fu...   353   e-102
AB003731_1(AB003731|pid:none) Cricetulus griseus gene for polyub...   353   e-102
protein update 2009. 5.24
PSORT 

 psg: 0.77  gvh: 0.37  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 1.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SFG337 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFG337Z
3' end seq. 
>SFG337Z.Seq
----------AAGTNGAAGGTTTTTGAAAACCATTGAAAATNTTAAAGCCAANNATCCAA
AAAAAANAAGGTTTTCCCCCAAGATCCACCAACGTNTTATTTTCGCTGGTAAACCAATTA
AAANATGGTGGTACTCTTTCCGGACTATAACATCAAAAGGAATCCNCTCTCCACTTAGTT
TTAAGATTAANAGGTGGTATGCAAAATCTTTGTTAAAACTCTCACTGGTAAAACAATCCC
TTTAGAAGTTGAAGGTTCTGATAACATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGA
AGGTATTCCACCAGATCAACAACGTCTCATTTTTGCTGGTAAACAATTGGAAGATGGTCG
TACTCTCTCTGACTATAACATTCAAAAGGAATCAACTCTTCACTTAGTTTTAAGATTAAN
AGGTGGTATGCAAATNTTTGTTAAAACTCTCACTGGTAAAACTATCACTTTGGAAGTTGA
AGGTTCTGATAATATTGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCACC
AGATCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGA
CTACAATATTCAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAANAGGTGGTATGCA
AATCTTTGTTAAAACTCTCACTGGTAAAACAATCACTTTAGAAGTTGAAGGTTCTGATAA
CATTGAAAATGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCACCAGATCAACAAAG
ATTAATCT
Length of 3' end seq. 778
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -