SFG336
Library SF
(Link to library)
Clone ID SFG336
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U02347-1
Original site URL
Representative seq. ID SFG336Z
(Link to Original site)
Representative DNA sequence
>SFG336 (SFG336Q) /CSM/SF/SFG3-B/SFG336Q.Seq.d/
XXXXXXXXXXCNGCAATTTTCATACTTGGAAATTGGTTTTCATTATCTCTCGTTTCATAC
TCCCATTAATCTATAATCATTCATTCTCTCATTTAATTTGTTTCTTCCTAATCTCTGAAT
TGGTTTTAGGTTGGTATTTAGCCATTTCTTTTCAAGTTAGTCATGTAGTTGAAGATCTTC
AATTCATGGCAACACCTGAAATTTTCGATGGTGCTGATCACCCATTACCAACAACCTTCA
ATCAAGATTGGGCAATTCTTCAAGTTAAAACTACTCAAGATTATGCTCAAGATTCAGTTT
TAAGTACTTTCTTTTCTGGTGGTTTAAATTTACAAGTTATTCATCATTGTTTCCCAACAA
TTGCTCAAGATTATTACCCACAAATTGTTCCAATTCTTAAAGAAGTTTGTAAAGAATATA
ATGTTACATATCATTATAAGCCAACATTTACTGAAGCAATAAAGTCTCATATCAACTATC
TTTACAAAATGGGTAATGATCCAGACTATGTCAGAAAACCAGTAAACAAAAACGATTAAT
CAAACTGTATTATCTCTTCTTAATTTCAAATTATTAGTTTATATCTCTTTATTTTATTTT
TAAAAAAAAAATTGTTTAGAAAAATTGAANCCAAGAAATA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---XNFHTWKLVFIISRFILPLIYNHSFSHLICFFLISELVLGWYLAISFQVSHVVEDLQ
FMATPEIFDGADHPLPTTFNQDWAILQVKTTQDYAQDSVLSTFFSGGLNLQVIHHCFPTI
AQDYYPQIVPILKEVCKEYNVTYHYKPTFTEAIKSHINYLYKMGNDPDYVRKPVNKND*s
nciiss*fqiislylfilflkkklfrkiexkk


Translated Amino Acid sequence (All Frames)
Frame A:
---XNFHTWKLVFIISRFILPLIYNHSFSHLICFFLISELVLGWYLAISFQVSHVVEDLQ
FMATPEIFDGADHPLPTTFNQDWAILQVKTTQDYAQDSVLSTFFSGGLNLQVIHHCFPTI
AQDYYPQIVPILKEVCKEYNVTYHYKPTFTEAIKSHINYLYKMGNDPDYVRKPVNKND*s
nciiss*fqiislylfilflkkklfrkiexkk


Frame B:
---aifilgnwfslslvsysh*siiihsli*fvss*slnwf*vgi*pflfklvm*lkifn
swqhlkfsmvlithyqqpsikigqffklkllkimlkiqf*vlsflvv*iyklfiivsqql
lkiithklfqflkkfvknimlhiiisqhllkq*slistiftkwvmiqtmsenq*tktinq
tvlsllnfkllvyislfyf*kkncleklxprn


Frame C:
---qfsyleigfhylsfhtpinl*sfilsfnlflpnl*igfrlvfshffss*scs*rssi
hgnt*nfrwc*spitnnlqsrlgnsss*nysrlcsrfsfkyflfwwfkftsysslfpnnc
srllptncsns*rsl*ri*cyisl*aniy*snkvsyqlslqng**srlcqktskqkrlik
lyylflisny*fislyfifkkkiv*kn*xqei


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFG336 (SFG336Q) /CSM/SF/SFG3-B/SFG336Q.Seq.d/ 1179 0.0
SSG614 (SSG614Q) /CSM/SS/SSG6-A/SSG614Q.Seq.d/ 1166 0.0
SFJ773 (SFJ773Q) /CSM/SF/SFJ7-D/SFJ773Q.Seq.d/ 1154 0.0
SFF147 (SFF147Q) /CSM/SF/SFF1-B/SFF147Q.Seq.d/ 1130 0.0
CFB188 (CFB188Q) /CSM/CF/CFB1-D/CFB188Q.Seq.d/ 1110 0.0
VSD576 (VSD576Q) /CSM/VS/VSD5-D/VSD576Q.Seq.d/ 1017 0.0
SSD596 (SSD596Q) /CSM/SS/SSD5-D/SSD596Q.Seq.d/ 670 0.0
VSH813 (VSH813Q) /CSM/VS/VSH8-A/VSH813Q.Seq.d/ 143 4e-33
VSF218 (VSF218Q) /CSM/VS/VSF2-A/VSF218Q.Seq.d/ 143 4e-33
VSC833 (VSC833Q) /CSM/VS/VSC8-B/VSC833Q.Seq.d/ 143 4e-33

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB022097|AB022097.1 Dictyostelium discoideum FadB mRNA for delta 5 fatty acid desaturase, complete cds. 1134 0.0 3
BD092935|BD092935.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids in plants. 90 1e-46 5
BD082645|BD082645.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids. 90 1e-46 5
BD082630|BD082630.1 Methods and compositions for synthesis of long chain poly-unsaturated fatty acids. 90 1e-46 5
AB029311|AB029311.1 Dictyostelium discoideum Dd des5 gene for fatty acid desaturase, complete cds. 78 1e-41 5
AC119626|AC119626.4 Rattus norvegicus clone CH230-392O8, WORKING DRAFT SEQUENCE, 4 unordered pieces. 42 9e-06 7
AC107447|AC107447.4 Rattus norvegicus clone CH230-46D21, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces. 42 6e-05 6
BX294434|BX294434.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-236H17. 34 0.013 8
AL807252|AL807252.5 Mouse DNA sequence from clone RP23-456B18 on chromosome 4. 38 0.024 7
AL137224|AL137224.17 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP4-594L9. 34 0.063 5
dna update 2003.12.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O96099) RecName: Full=Delta(5) fatty acid desaturase B; ... 355 8e-97
(Q9Y1W0) RecName: Full=Delta(5) fatty acid desaturase A; ... 243 4e-63
(Q1ZXQ5) RecName: Full=Probable Delta(5) fatty acid desaturase C... 181 2e-44
EF678404_1(EF678404|pid:none) Picea sitchensis clone WS0291_A04 ... 126 6e-28
AB188307_1(AB188307|pid:none) Mortierella alpina gene for delta5... 124 3e-27
(O74212) RecName: Full=Delta(5) fatty acid desaturase; ... 122 8e-27
AF419297_1(AF419297|pid:none) Pythium irregulare delta-5 fatty a... 117 3e-25
CQ831428_1(CQ831428|pid:none) Sequence 9 from Patent WO2004057001. 114 2e-24
CP000592_278(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 111 1e-23
CP001574_328(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 111 2e-23
protein update 2009. 5.24
PSORT

psg: 0.83 gvh: 0.72 alm: 0.27 top: 0.37 tms: 0.07 mit: 0.37 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.18 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
16.0 %: mitochondrial
16.0 %: Golgi
12.0 %: nuclear
4.0 %: plasma membrane
4.0 %: peroxisomal
4.0 %: extracellular, including cell wall

>> prediction for SFG336 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFG336Z
3' end seq.
>SFG336Z.Seq
----------CNGCAATTTTCATACTTGGAAATTGGTTTTCATTATCTCTCGTTTCATAC
TCCCATTAATCTATAATCATTCATTCTCTCATTTAATTTGTTTCTTCCTAATCTCTGAAT
TGGTTTTAGGTTGGTATTTAGCCATTTCTTTTCAAGTTAGTCATGTAGTTGAAGATCTTC
AATTCATGGCAACACCTGAAATTTTCGATGGTGCTGATCACCCATTACCAACAACCTTCA
ATCAAGATTGGGCAATTCTTCAAGTTAAAACTACTCAAGATTATGCTCAAGATTCAGTTT
TAAGTACTTTCTTTTCTGGTGGTTTAAATTTACAAGTTATTCATCATTGTTTCCCAACAA
TTGCTCAAGATTATTACCCACAAATTGTTCCAATTCTTAAAGAAGTTTGTAAAGAATATA
ATGTTACATATCATTATAAGCCAACATTTACTGAAGCAATAAAGTCTCATATCAACTATC
TTTACAAAATGGGTAATGATCCAGACTATGTCAGAAAACCAGTAAACAAAAACGATTAAT
CAAACTGTATTATCTCTTCTTAATTTCAAATTATTAGTTTATATCTCTTTATTTTATTTT
TAAAAAAAAAATTGTTTAGAAAAATTGAANCCAAGAAATA
Length of 3' end seq. 630
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -