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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFG327
Library SF
(Link to library)
Clone ID SFG327
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16464-1
Original site URL
Representative seq. ID SFG327Z
(Link to Original site)
Representative DNA sequence 
>SFG327 (SFG327Q) /CSM/SF/SFG3-B/SFG327Q.Seq.d/
XXXXXXXXXXTATCATCATCTTTGCATCATTAATGGCAACTGTGTCTTTGAATCTTTTAT
ATGAAGGTGTATCAAAATTAATTTCACGTCCAGAAGACCCAGAAATAACACTCTCAACAA
AGATTTTAATGTACTCTTTGGTTGGTCTTGCAATTTTAATCAAAGTAGCAATGTTTTTAT
ATTGTCGTAGATTAACTCATTCATCATCTTCAATGATTTTAGCAACCGATCATAGAAATG
ATATCGTGGTTAATTCATTTGGTGTTGGTATGGCTATTTTAGGTCAAAATTGGGTTTGGT
GGTTAGATCCAAGTGGTGCAATCGTTGTTGCTTTAATCATTTTACGTTCTTGGACTTCTG
AAGCCTATGAACAAATTCAATTATTAGTTGGTAAATCAGCATCACCAGAATTCCTTCAAA
AATTAACTTTTATAGCTTTAACTCATCATCCTGAAGTACTTAAAGTTGATACTTGTAGAG
CATTCCATGTTGGTAATAATTTATATGTTGAAGTTGATATAGTCTTACCACCATCAATGC
CATTGGTTCAAACTCATGATATTGGTGAATCACTTCAAGAGAAATTAGAATCATTATCAG
ATGTTGATAGAGCTTTTGTTCATGTTGATTATGAATATAAACATAAACCAGAACATAAAA
GAGTTCATTAAAAAAATTAAAAAAAATAAAAAAAATAAAAAAAAAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---IIIFASLMATVSLNLLYEGVSKLISRPEDPEITLSTKILMYSLVGLAILIKVAMFLY
CRRLTHSSSSMILATDHRNDIVVNSFGVGMAILGQNWVWWLDPSGAIVVALIILRSWTSE
AYEQIQLLVGKSASPEFLQKLTFIALTHHPEVLKVDTCRAFHVGNNLYVEVDIVLPPSMP
LVQTHDIGESLQEKLESLSDVDRAFVHVDYEYKHKPEHKRVH*kn*kk*kk*kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---IIIFASLMATVSLNLLYEGVSKLISRPEDPEITLSTKILMYSLVGLAILIKVAMFLY
CRRLTHSSSSMILATDHRNDIVVNSFGVGMAILGQNWVWWLDPSGAIVVALIILRSWTSE
AYEQIQLLVGKSASPEFLQKLTFIALTHHPEVLKVDTCRAFHVGNNLYVEVDIVLPPSMP
LVQTHDIGESLQEKLESLSDVDRAFVHVDYEYKHKPEHKRVH*kn*kk*kk*kkkk


Frame B:
---ssslhh*wqlcl*ifymkvyqn*fhvqktqk*hsqqrf*ctlwlvlqf*sk*qcfyi
vvd*lihhlq*f*qpiiemiswlihlvlvwlf*vkigfgg*iqvvqslll*sfyvlgllk
pmnkfny*lvnqhhqnsfkn*ll*l*liilkylklilvehsmlviiymlkli*syhhqch
wfklmilvnhfkrn*nhyqmliellfmlimnininqnikefikkikknkknkkkkk


Frame C:
---hhlciingncvfesfi*rcikinftsrrprnntlnkdfnvlfgwscnfnqssnvfil
s*insfiifndfsnrs*k*yrg*fiwcwygyfrsklglvvrskwcnrccfnhftfldf*s
l*tnsiisw*isitripskinfysfnsss*st*s*yl*sipcw**fic*s*yslttinai
gsns*yw*itsreiriiirc**sfcsc*l*i*t*trt*ksslkklkkikkikkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFG327 (SFG327Q) /CSM/SF/SFG3-B/SFG327Q.Seq.d/                       1306   0.0
CFH740 (CFH740Q) /CSM/CF/CFH7-B/CFH740Q.Seq.d/                       1267   0.0
AFK811 (AFK811Q) /CSM/AF/AFK8-A/AFK811Q.Seq.d/                       1267   0.0
AFG186 (AFG186Q) /CSM/AF/AFG1-D/AFG186Q.Seq.d/                       1261   0.0
SFK666 (SFK666Q) /CSM/SF/SFK6-C/SFK666Q.Seq.d/                       1227   0.0
AFA617 (AFA617Q) /CSM/AF/AFA6-A/AFA617Q.Seq.d/                       1219   0.0
VFJ381 (VFJ381Q) /CSM/VF/VFJ3-D/VFJ381Q.Seq.d/                       1217   0.0
VFH619 (VFH619Q) /CSM/VF/VFH6-A/VFH619Q.Seq.d/                       1211   0.0
AFL320 (AFL320Q) /CSM/AF/AFL3-A/AFL320Q.Seq.d/                       1174   0.0
AFB843 (AFB843Q) /CSM/AF/AFB8-B/AFB843Q.Seq.d/                       1160   0.0
own update 2001.11.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BF596717|BF596717.1 su73g11.y1 Gm-c1055 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1055-334 5' similar to TR:O80632 O80632 F12L6.11 PROTEIN. ;, mRNA sequence.    40   4e-05  2
BM092674|BM092674.1 sah17c04.y3 Gm-c1086 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1086-1640 5' similar to TR:O80632 O80632 F12L6.11 PROTEIN. ;, mRNA sequence.    40   4e-05  2
AW102462|AW102462.1 sd88e01.y1 Gm-c1009 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1009-1489 5' similar to TR:O80632 O80632 F12L6.11 PROTEIN. ;, mRNA sequence.    40   4e-05  2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   3e-04  18
AJ497589|AJ497589.1 Medicago truncatula EST, clone mt--abc955111c11.    38   0.002  2
BQ154268|BQ154268.1 NF063C04IR1F1034 Irradiated Medicago truncatula cDNA clone NF063C04IR 5', mRNA sequence.    38   0.002  2
AC115724|AC115724.7 Mus musculus clone RP23-20L18, WORKING DRAFT SEQUENCE, 6 unordered pieces.    34   0.006  11
AC080139|AC080139.2 Mus musculus chromosome 5 clone RP23-432L21 strain C57BL6/J, WORKING DRAFT SEQUENCE, 24 unordered pieces.    40   0.012  8
AC111722|AC111722.4 Rattus norvegicus clone CH230-63K18, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    36   0.014  9
AC111751|AC111751.4 Rattus norvegicus clone CH230-173M19, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34   0.023  8
dna update 2003.12.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF677555_1(EF677555|pid:none) Picea sitchensis clone WS02770_I19...   203   4e-51
CP001574_635(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   201   2e-50
AY181258_1(AY181258|pid:none) Stylosanthes hamata cation diffusi...   200   3e-50
AP003231_3(AP003231|pid:none) Oryza sativa Japonica Group genomi...   200   4e-50
AC004218_11(AC004218|pid:none) Arabidopsis thaliana chromosome 2...   199   9e-50
EF453693_1(EF453693|pid:none) Populus trichocarpa Mn-specific ca...   197   3e-49
AY181257_1(AY181257|pid:none) Stylosanthes hamata cation diffusi...   196   4e-49
EU973024_1(EU973024|pid:none) Zea mays clone 391920 unknown mRNA.     195   1e-48
AC107226_21(AC107226|pid:none) Oryza sativa (japonica cultivar-g...   194   2e-48
AP008209_797(AP008209|pid:none) Oryza sativa (japonica cultivar-...   194   2e-48
protein update 2009. 5.24
PSORT 

 psg: 0.98  gvh: 0.50  alm: 0.25  top: 0.33  tms: 0.20  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  8.0 %: plasma membrane
	  8.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for SFG327 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFG327Z
3' end seq. 
>SFG327Z.Seq
----------TATCATCATCTTTGCATCATTAATGGCAACTGTGTCTTTGAATCTTTTAT
ATGAAGGTGTATCAAAATTAATTTCACGTCCAGAAGACCCAGAAATAACACTCTCAACAA
AGATTTTAATGTACTCTTTGGTTGGTCTTGCAATTTTAATCAAAGTAGCAATGTTTTTAT
ATTGTCGTAGATTAACTCATTCATCATCTTCAATGATTTTAGCAACCGATCATAGAAATG
ATATCGTGGTTAATTCATTTGGTGTTGGTATGGCTATTTTAGGTCAAAATTGGGTTTGGT
GGTTAGATCCAAGTGGTGCAATCGTTGTTGCTTTAATCATTTTACGTTCTTGGACTTCTG
AAGCCTATGAACAAATTCAATTATTAGTTGGTAAATCAGCATCACCAGAATTCCTTCAAA
AATTAACTTTTATAGCTTTAACTCATCATCCTGAAGTACTTAAAGTTGATACTTGTAGAG
CATTCCATGTTGGTAATAATTTATATGTTGAAGTTGATATAGTCTTACCACCATCAATGC
CATTGGTTCAAACTCATGATATTGGTGAATCACTTCAAGAGAAATTAGAATCATTATCAG
ATGTTGATAGAGCTTTTGTTCATGTTGATTATGAATATAAACATAAACCAGAACATAAAA
GAGTTCATTAAAAAAATTAAAAAAAATAAAAAAAATAAAAAAAAAAAAAAA
Length of 3' end seq. 701
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -