SFG322
Library SF
(Link to library)
Clone ID SFG322
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14096-1
Original site URL
Representative seq. ID SFG322Z
(Link to Original site)
Representative DNA sequence
>SFG322 (SFG322Q) /CSM/SF/SFG3-A/SFG322Q.Seq.d/
XXXXXXXXXXCATTCCCAGATTNACTTCCAAAATTCAAAAAAGTAGGAACTACAAAAATT
GGTCAAACCGATGNTGATGTATGGATTGTCAAAGGTAAACAACAATGCAATGTAACCAGA
TNTTGNATTTTAATTCAAAAANATACATGNACCCTTATGTNTGCCAATTTCGGTAACAAA
GATAAATCAAATNTAGGTTTCTCACTTTTAAATTATTATAGATATGAAAATNGGNCGCNT
TATGATAAATTCCAATTACCATNACAATGNTGGGATGNTTANCCTAAAGATGAAAATGAA
AATAAAGAAGAACAAGGTTTNTTTGNAAATGAANAAGAACTAGAAAATAAAGAATATTTT
GGTGATAACCNACAAGCTCCATCAATGANAATTACTAAAAATAATCCACATGGTAAATAA
TAATNCATAATAATAAANAATATCATCANAGAGNA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---FPDXLPKFKKVGTTKIGQTDXDVWIVKGKQQCNVTRXXILIQKXTXTLMXANFGNKD
KSNXGFSLLNYYRYENXXXYDKFQLPXQXWDXXPKDENENKEEQGXFXNEXELENKEYFG
DNXQAPSMXITKNNPHGK**xiiixniixe


Translated Amino Acid sequence (All Frames)
Frame A:
---iprxtskiqksrnyknwsnrx*cmdcqr*ttmqcnqxlxfnskxymxpyvcqfr*qr
*ikxrfltfkll*i*kxxal**ipitxtmxgxlx*r*k*k*rrtrfxxk*xrtrk*rifw
**ptssinxny*k*stw*iixhnnkxyhxrx


Frame B:
---FPDXLPKFKKVGTTKIGQTDXDVWIVKGKQQCNVTRXXILIQKXTXTLMXANFGNKD
KSNXGFSLLNYYRYENXXXYDKFQLPXQXWDXXPKDENENKEEQGXFXNEXELENKEYFG
DNXQAPSMXITKNNPHGK**xiiixniixe


Frame C:
---sqixfqnskk*elqklvkpmxmyglskvnnnam*pdxxf*fkxihxplcxpisvtki
nqx*vshf*iiidmkxgrxminsnyhxnxgmxxlkmkmkikknkvxlxmxkn*kiknilv
itxklhq*xllkiihmvnnnx***xissxx


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFG322 (SFG322Q) /CSM/SF/SFG3-A/SFG322Q.Seq.d/ 644 0.0
SSK701 (SSK701Q) /CSM/SS/SSK7-A/SSK701Q.Seq.d/ 589 e-167
SSF594 (SSF594Q) /CSM/SS/SSF5-D/SSF594Q.Seq.d/ 589 e-167
SSK867 (SSK867Q) /CSM/SS/SSK8-C/SSK867Q.Seq.d/ 581 e-165
SSD307 (SSD307Q) /CSM/SS/SSD3-A/SSD307Q.Seq.d/ 571 e-162
SSM335 (SSM335Q) /CSM/SS/SSM3-B/SSM335Q.Seq.d/ 559 e-158
SSK159 (SSK159Q) /CSM/SS/SSK1-C/SSK159Q.Seq.d/ 549 e-155
SSI343 (SSI343Q) /CSM/SS/SSI3-B/SSI343Q.Seq.d/ 525 e-148
SFG563 (SFG563Q) /CSM/SF/SFG5-C/SFG563Q.Seq.d/ 523 e-148
SSI591 (SSI591Q) /CSM/SS/SSI5-D/SSI591Q.Seq.d/ 502 e-141

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC138148|AC138148.1 Homo sapiens chromosome 8 clone CTD-2179J14 map 8, LOW-PASS SEQUENCE SAMPLING. 40 0.016 2
BJ097216|BJ097216.1 Xenopus laevis cDNA clone:XL173m06, 5' end, single read. 50 0.026 1
AW641907|AW641907.1 cm12g07.w1 Blackshear/Soares normalized Xenopus egg library Xenopus laevis cDNA clone PBX0111G07 5', mRNA sequence. 50 0.026 1
BJ097216|BJ097216.1 Xenopus laevis cDNA clone:XL173m06, 5' end, single read. 50 0.026 1
BU912188|BU912188.1 AGENCOURT_10457531 NICHD XGC OO1 Xenopus laevis cDNA clone IMAGE:6638332 5', mRNA sequence. 50 0.026 1
BJ626501|BJ626501.1 Xenopus laevis cDNA clone:XL215b13, 5' end. 50 0.026 1
BG893125|BG893125.1 daa88e02.y1 Wellcome CRC pRN3 St13 17 egg animal cap Xenopus laevis cDNA clone IMAGE:4084323 5' similar to TR:Q9UKY7 Q9UKY7 HYPOTHETICAL 27.3 KD PROTEIN. ;, mRNA sequence. 50 0.026 1
BF047577|BF047577.1 dc79g04.y1 NICHD XGC OO1 Xenopus laevis cDNA clone IMAGE:3403350 5' similar to TR:Q9UKY7 Q9UKY7 HYPOTHETICAL 27.3 KD PROTEIN. ;, mRNA sequence. 50 0.026 1
CD255193|CD255193.1 AGENCOURT_14158214 NICHD_XGC_Brn1 Xenopus laevis cDNA clone IMAGE:6953588 5', mRNA sequence. 50 0.026 1
CA984857|CA984857.1 AGENCOURT_11280334 Wellcome/CRC_pSK_egg Xenopus laevis cDNA clone IMAGE:6869191 5', mRNA sequence. 50 0.026 1
dna update 2003.12.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116550_6(AC116550|pid:none) Dictyostelium discoideum chromosom... 36 0.35
AC116550_3(AC116550|pid:none) Dictyostelium discoideum chromosom... 35 0.78

protein update 2009. 1.10
PSORT

psg: 0.73 gvh: 0.34 alm: 0.53 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SFG322 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFG322Z
3' end seq.
>SFG322Z.Seq
----------CATTCCCAGATTNACTTCCAAAATTCAAAAAAGTAGGAACTACAAAAATT
GGTCAAACCGATGNTGATGTATGGATTGTCAAAGGTAAACAACAATGCAATGTAACCAGA
TNTTGNATTTTAATTCAAAAANATACATGNACCCTTATGTNTGCCAATTTCGGTAACAAA
GATAAATCAAATNTAGGTTTCTCACTTTTAAATTATTATAGATATGAAAATNGGNCGCNT
TATGATAAATTCCAATTACCATNACAATGNTGGGATGNTTANCCTAAAGATGAAAATGAA
AATAAAGAAGAACAAGGTTTNTTTGNAAATGAANAAGAACTAGAAAATAAAGAATATTTT
GGTGATAACCNACAAGCTCCATCAATGANAATTACTAAAAATAATCCACATGGTAAATAA
TAATNCATAATAATAAANAATATCATCANAGAGNA
Length of 3' end seq. 445
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -