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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFG307
Library SF
(Link to library)
Clone ID SFG307
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15323-1
Original site URL
Representative seq. ID SFG307Z
(Link to Original site)
Representative DNA sequence 
>SFG307 (SFG307Q) /CSM/SF/SFG3-A/SFG307Q.Seq.d/
XXXXXXXXXXGTCTTAAAGATTGATCTTGCCAAGAATTGTCCATCCCAATTATCAATCAC
TGAAAATGCACACACATTAGCTCGTTATGCTGCAATTTGTCAAGAGAATGGTTTGGTCCC
AATCGTCGAACCAGAAATCTTAATGGATGGTAATCACACTGTCGAGCAATCTGCTGAAGT
CACTGAAAAAGTTTTAGCTGCAGTTTTCAAAGCACTCAATGACCATCATATCTTATTAGA
AGGTGCCTTATTAAAACCAAATATGGTCGTCAATGGTACCGACTGTCCAATCAAAGCCAC
CTCTGAACAAATTGGTAAATTCACCGTCCGTACCCTTCAACGTACTGTTCCACCAGCTCT
TACTGGTGTTGTTTTCTTATCTGGTGGTCAAACTGAAATTGAAGCCACTGCAAACTTAAA
CGCTATGAATGTCTTACCAAATCGTCCATGGGCTCTCTCTTTCTCATACGGTCGTGCCTT
ACAGGCCTCTGTCATCTCCACTTGGAAAGGTGAATCTGCCAACGTTGAAGCTGCTCGTAA
AGTTTATTTACATCGTGCCAAGTGTAACTCTCTTGCTCAACTCGGTAAATACACTGGTGA
GGAATCAACTGGTTCAGCATCTGAATCATTATATGTAAAAGATTACAAATATTAAATATA
TAAAATAAATATCTAAACATTAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---LKIDLAKNCPSQLSITENAHTLARYAAICQENGLVPIVEPEILMDGNHTVEQSAEVT
EKVLAAVFKALNDHHILLEGALLKPNMVVNGTDCPIKATSEQIGKFTVRTLQRTVPPALT
GVVFLSGGQTEIEATANLNAMNVLPNRPWALSFSYGRALQASVISTWKGESANVEAARKV
YLHRAKCNSLAQLGKYTGEESTGSASESLYVKDYKY*iykini*tlk
Translated Amino Acid sequence (All Frames) 
Frame A:
---s*rlilprivhpnyqslkmhth*lvmlqfvkrmvwsqssnqks*wmvitlssnllks
lkkf*lqfskhsmtiisy*kvpy*nqiwssmvptvqskpplnklvnspsvpfnvlfhqll
lvlfsylvvklklkplqt*tl*msyqivhglslshtvvpyrplssplgkvnlptlkllvk
fiyivpsvtlllnsvntlvrnqlvqhlnhym*kitnikyik*iskh*k


Frame B:
---lkd*scqelsipiinh*kcthisslccnlsrewfgpnrrtrnlngw*shcraic*sh
*ksfscsfqstq*psylirrcliktkygrqwyrlsnqshl*tnw*ihrpypstycstssy
wccfliwwsn*n*shcklkryecltkssmgslflirscltglchlhler*icqr*scs*s
lftscqv*lscstr*ihw*ginwfsi*iiickrlqilni*nkylnikk


Frame C:
---LKIDLAKNCPSQLSITENAHTLARYAAICQENGLVPIVEPEILMDGNHTVEQSAEVT
EKVLAAVFKALNDHHILLEGALLKPNMVVNGTDCPIKATSEQIGKFTVRTLQRTVPPALT
GVVFLSGGQTEIEATANLNAMNVLPNRPWALSFSYGRALQASVISTWKGESANVEAARKV
YLHRAKCNSLAQLGKYTGEESTGSASESLYVKDYKY*iykini*tlk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFJ101 (VFJ101Q) /CSM/VF/VFJ1-A/VFJ101Q.Seq.d/                       1261   0.0
VFI422 (VFI422Q) /CSM/VF/VFI4-A/VFI422Q.Seq.d/                       1261   0.0
SLB179 (SLB179Q) /CSM/SL/SLB1-D/SLB179Q.Seq.d/                       1261   0.0
SFI819 (SFI819Q) /CSM/SF/SFI8-A/SFI819Q.Seq.d/                       1261   0.0
SFI292 (SFI292Q) /CSM/SF/SFI2-D/SFI292Q.Seq.d/                       1261   0.0
SFG307 (SFG307Q) /CSM/SF/SFG3-A/SFG307Q.Seq.d/                       1261   0.0
CFH402 (CFH402Q) /CSM/CF/CFH4-A/CFH402Q.Seq.d/                       1261   0.0
CFF463 (CFF463Q) /CSM/CF/CFF4-C/CFF463Q.Seq.d/                       1261   0.0
VFD501 (VFD501Q) /CSM/VF/VFD5-A/VFD501Q.Seq.d/                       1259   0.0
CFC264 (CFC264Q) /CSM/CF/CFC2-C/CFC264Q.Seq.d/                       1259   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1261   0.0    1
BG521579|BG521579.1 12-10 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence.    52   9e-09  2
CD479311|CD479311.1 eca01-7ms1-b11 Eca01 Eschscholzia californica cDNA clone eca01-7ms1-b11 5', mRNA sequence.    72   1e-08  1
CD477304|CD477304.1 eca01-7ms1-f05 Eca01 Eschscholzia californica cDNA clone eca01-7ms1-f05 5', mRNA sequence.    72   1e-08  1
BQ045720|BQ045720.1 EST594838 P. infestans-challenged potato leaf, incompatible reaction Solanum tuberosum cDNA clone BPLI12N15 5' end, mRNA sequence.    52   4e-08  2
CK266825|CK266825.1 EST712903 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAC706 3' end, mRNA sequence.    52   4e-08  2
BI433300|BI433300.1 EST536061 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCBC84 5' sequence, mRNA sequence.    52   4e-08  2
CK271834|CK271834.1 EST717912 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAD155 3' end, mRNA sequence.    52   4e-08  2
CK273690|CK273690.1 EST719768 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADC79 3' end, mRNA sequence.    52   4e-08  2
CK267895|CK267895.1 EST713973 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POACD41 3' end, mRNA sequence.    52   5e-08  2
dna update 2003.12.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86A67) RecName: Full=Fructose-bisphosphate aldolase;          ...   386   e-106
EF134032_1(EF134032|pid:none) Perkinsus chesapeaki isolate Pch_c...   261   1e-68
AM910994_614(AM910994|pid:none) Plasmodium knowlesi strain H chr...   253   4e-66
AF247063_1(AF247063|pid:none) Plasmodium vivax WDK fructose 1,6-...   251   1e-65
DQ874472_1(DQ874472|pid:none) Plasmodium vivax strain A11 fructo...   251   1e-65
AF247060_1(AF247060|pid:none) Plasmodium chabaudi AS fructose 1,...   249   5e-65
AF247059_1(AF247059|pid:none) Plasmodium yoelii YM fructose 1,6-...   248   2e-64
AF247062_1(AF247062|pid:none) Plasmodium berghei QIMR fructose 1...   247   3e-64
A45610(A45610)fructose-bisphosphate aldolase (EC 4.1.2.13) 2 - P...   247   3e-64
DQ874471_1(DQ874471|pid:none) Plasmodium falciparum strain Ph1 f...   244   2e-63
protein update 2009. 5.24
PSORT 

 psg: 0.82  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SFG307 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFG307Z
3' end seq. 
>SFG307Z.Seq
----------GTCTTAAAGATTGATCTTGCCAAGAATTGTCCATCCCAATTATCAATCAC
TGAAAATGCACACACATTAGCTCGTTATGCTGCAATTTGTCAAGAGAATGGTTTGGTCCC
AATCGTCGAACCAGAAATCTTAATGGATGGTAATCACACTGTCGAGCAATCTGCTGAAGT
CACTGAAAAAGTTTTAGCTGCAGTTTTCAAAGCACTCAATGACCATCATATCTTATTAGA
AGGTGCCTTATTAAAACCAAATATGGTCGTCAATGGTACCGACTGTCCAATCAAAGCCAC
CTCTGAACAAATTGGTAAATTCACCGTCCGTACCCTTCAACGTACTGTTCCACCAGCTCT
TACTGGTGTTGTTTTCTTATCTGGTGGTCAAACTGAAATTGAAGCCACTGCAAACTTAAA
CGCTATGAATGTCTTACCAAATCGTCCATGGGCTCTCTCTTTCTCATACGGTCGTGCCTT
ACAGGCCTCTGTCATCTCCACTTGGAAAGGTGAATCTGCCAACGTTGAAGCTGCTCGTAA
AGTTTATTTACATCGTGCCAAGTGTAACTCTCTTGCTCAACTCGGTAAATACACTGGTGA
GGAATCAACTGGTTCAGCATCTGAATCATTATATGTAAAAGATTACAAATATTAAATATA
TAAAATAAATATCTAAACATTAAAAAA
Length of 3' end seq. 677
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -