>SFG280 (SFG280Q) /CSM/SF/SFG2-D/SFG280Q.Seq.d/
XXXXXXXXXXTGGTGATGTACATAAAAACTTTAAAAGAACTGCCAATGAAACCCAAAAGG
ATGCCAATAGACTCACCTCTGATGTTAAGAATGAATCAAATAAAATCTATAAAGATATTA
AGGATGAATCAAATAAACTCTACAATGATGTCAAGGGTGAATCAAGTAAAATCTATAATG
GTGCTAAAAAAGAAGGTTCCAAATTGGCTACCGATCTCAAGAAGGATACTCAATACGTTG
CAGATGAAACCAAAAAGATGGCAGCTGATCTCAAGAATAAAGCCGCTGATACCTATCAAG
ACCTTTCTCATGATGCCTCAAAGAAAGCCACTCAACTCAAAAAGAAAGCTAGTGAAACCC
TTGATGAATCTGCCGATGCTATTGAACATCAATTCGATATAATGAAGAAAGATTTCAGAC
ATCTCAATCAACGTAATGGTATGATTTGGGGAAGTATTGGTTTAATTGGTGGTGCAACTG
CAACATCTTACCTTTTCCCATCTGCATCTCCAATGGCTAAATTCACTTTTATTGCTGGTC
TTGCAAGTTTAGGTGGTTACTATGGTCTCCATCAACCACACAATAAGATTGTTNATAATG
CTTTCCACAAAGCAAACAATAAAAAGGAAGAATNAAAAAGAAAA

---GDVHKNFKRTANETQKDANRLTSDVKNESNKIYKDIKDESNKLYNDVKGESSKIYNG
AKKEGSKLATDLKKDTQYVADETKKMAADLKNKAADTYQDLSHDASKKATQLKKKASETL
DESADAIEHQFDIMKKDFRHLNQRNGMIWGSIGLIGGATATSYLFPSASPMAKFTFIAGL
ASLGGYYGLHQPHNKIVXNAFHKANNKKEEXKRK

Frame A:
---GDVHKNFKRTANETQKDANRLTSDVKNESNKIYKDIKDESNKLYNDVKGESSKIYNG
AKKEGSKLATDLKKDTQYVADETKKMAADLKNKAADTYQDLSHDASKKATQLKKKASETL
DESADAIEHQFDIMKKDFRHLNQRNGMIWGSIGLIGGATATSYLFPSASPMAKFTFIAGL
ASLGGYYGLHQPHNKIVXNAFHKANNKKEEXKRK


Frame B:
---vmyiktlkelpmkpkrmpidsplmlrmnqiksikilrmnqinstmmsrvnqvksimv
lkkkvpnwlpisrrilntlqmkpkrwqlisrikplipiktflmmpqrkplnskrklvkpl
mnlpmllninsi**rkisdisinvmv*fgevlv*lvvqlqhltfshlhlqwlnsllllvl
qv*vvtmvsinhtirlximlstkqtikrknxke


Frame C:
---*ct*kl*kncq*npkgcq*thl*c*e*ik*nl*ry*g*ik*tlq*cqg*ik*nl*wc
*krrfqigyrsqegysircr*nqkdgs*sqe*sr*ylsrpfs*clkeshstqkes**np*
*icrcy*tsiryneerfqtsqst*wydlgkywfnwwcncnilpfpicisng*ihfycwsc
kfrwllwspsttq*dcx*cfpqskq*kgrxkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFG280 (SFG280Q) /CSM/SF/SFG2-D/SFG280Q.Seq.d/                       1245   0.0
CFB686 (CFB686Q) /CSM/CF/CFB6-D/CFB686Q.Seq.d/                       1245   0.0
CFA332 (CFA332Q) /CSM/CF/CFA3-B/CFA332Q.Seq.d/                       1245   0.0
CFA119 (CFA119Q) /CSM/CF/CFA1-A/CFA119Q.Seq.d/                       1237   0.0
SFI625 (SFI625Q) /CSM/SF/SFI6-B/SFI625Q.Seq.d/                       1235   0.0
SFE175 (SFE175Q) /CSM/SF/SFE1-D/SFE175Q.Seq.d/                       1235   0.0
SFD712 (SFD712Q) /CSM/SF/SFD7-A/SFD712Q.Seq.d/                       1235   0.0
SFD202 (SFD202Q) /CSM/SF/SFD2-A/SFD202Q.Seq.d/                       1235   0.0
CHD244 (CHD244Q) /CSM/CH/CHD2-B/CHD244Q.Seq.d/                       1235   0.0
CFK112 (CFK112Q) /CSM/CF/CFK1-A/CFK112Q.Seq.d/                       1235   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY392441|AY392441.1 Dictyostelium discoideum possible blackjack gene, complete cds.  1235   0.0    1
AC104159|AC104159.3 Pan troglodytes clone RP43-82O21, WORKING DRAFT SEQUENCE.    32   0.19   9
AL356502|AL356502.21 Human DNA sequence from clone RP11-430I3 on chromosome 13.    36   0.24   4
BM144165|BM144165.1 EST 088 Aedes aegypti Antennal Library Aedes aegypti cDNA clone AaegM104, mRNA sequence.    42   0.27   2
AC009870|AC009870.3 Homo sapiens clone RP11-219J10, WORKING DRAFT SEQUENCE, 19 unordered pieces.    36   0.37   7
AC146920|AC146920.2 Otolemur garnettii clone CH256-154N14, WORKING DRAFT SEQUENCE, 6 ordered pieces.    34   0.52   8
BB270993|BB270993.1 Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830052C02, 3' end partial sequence, similar to ddbj:AF033655 Mus musculus Pftaire-1 mRNA.    46   0.59   1
BH685336|BH685336.1 BOMOT79TF BO_2_3_KB Brassica oleracea genomic clone BOMOT79, DNA sequence.    46   0.59   1
BH571795|BH571795.1 BOGJB38TR BOGJ Brassica oleracea genomic clone BOGJB38, DNA sequence.    46   0.59   1
L08500|L08500.1 Plasmodium vinckei cysteine proteinase gene sequence.    46   0.59   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY392441_1(AY392441|pid:none) Dictyostelium discoideum possible ...   370   e-101
AC117076_42(AC117076|pid:none) Dictyostelium discoideum chromoso...    70   5e-11
CP000746_1366(CP000746|pid:none) Actinobacillus succinogenes 130...    51   3e-05
CR382131_450(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    51   3e-05
CP000826_3508(CP000826|pid:none) Serratia proteamaculans 568, co...    50   5e-05
AE014188_364(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    50   7e-05
AB011475_6(AB011475|pid:none) Arabidopsis thaliana genomic DNA, ...    49   1e-04
Z73975_1(Z73975|pid:none) Caenorhabditis elegans Cosmid T06E8, c...    48   2e-04
CR382132_1016(CR382132|pid:none) Yarrowia lipolytica strain CLIB...    48   2e-04
Z73975_2(Z73975|pid:none) Caenorhabditis elegans Cosmid T06E8, c...    48   2e-04

 psg: 0.43  gvh: 0.00  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SFG280 is nuc

>SFG280Z.Seq
----------TGGTGATGTACATAAAAACTTTAAAAGAACTGCCAATGAAACCCAAAAGG
ATGCCAATAGACTCACCTCTGATGTTAAGAATGAATCAAATAAAATCTATAAAGATATTA
AGGATGAATCAAATAAACTCTACAATGATGTCAAGGGTGAATCAAGTAAAATCTATAATG
GTGCTAAAAAAGAAGGTTCCAAATTGGCTACCGATCTCAAGAAGGATACTCAATACGTTG
CAGATGAAACCAAAAAGATGGCAGCTGATCTCAAGAATAAAGCCGCTGATACCTATCAAG
ACCTTTCTCATGATGCCTCAAAGAAAGCCACTCAACTCAAAAAGAAAGCTAGTGAAACCC
TTGATGAATCTGCCGATGCTATTGAACATCAATTCGATATAATGAAGAAAGATTTCAGAC
ATCTCAATCAACGTAATGGTATGATTTGGGGAAGTATTGGTTTAATTGGTGGTGCAACTG
CAACATCTTACCTTTTCCCATCTGCATCTCCAATGGCTAAATTCACTTTTATTGCTGGTC
TTGCAAGTTTAGGTGGTTACTATGGTCTCCATCAACCACACAATAAGATTGTTNATAATG
CTTTCCACAAAGCAAACAATAAAAAGGAAGAATNAAAAAGAAAA