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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFG247
Library SF
(Link to library)
Clone ID SFG247
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16465-1
Original site URL
Representative seq. ID SFG247P
(Link to Original site)
Representative DNA sequence 
>SFG247 (SFG247Q) /CSM/SF/SFG2-B/SFG247Q.Seq.d/
ACTGTTGGCCTACTGGATTTTTTTGTACATTCACACCACTTTCCACCACACCTTCAATTT
ATTTGTATATATATTTTAAACTTTAACAACCAAAAAAAAAAXXXXXXXXXXTCGTATTTT
ACAATTAGCATCTGAAGGTGCACTCTCACTCAAAGAGATTAAACAATTCATTCTTGATGA
ATGTGATACCATGCTCGAATCATTGGATATGAGAAAGGATGTACAAAAGATCTTCAAACT
CATCCCAGCCAACAAACAAGTTATGATGTTTTCAGCTACCCTCTCTGATACCATTCGTCC
AATCTGTAAGAAGTTTATGAACAATCCATTGGAAATCTACATCAATGATGGTAGTAAACT
CACTCTCCATGGTCTTCAACAATACTACGTACCAATCACTGAAGAACAAAAGAATAAAAA
ACTCATTGAACTCTTGGATTCATTAGACTTTAATCAAGCCGTTATTTTCGTCAAATCTGT
TAGACGTGCTGATGCCTTAAATAAGATCCTCCAAGATATTGGTTTCCCATCCATCTGTAT
TCATCGTGACCTCGATCAAAAGGATCGTATCGAACAATACCGTAAATTCAAAAACTTTGA
ATCTCGTATCATGGTTGCCACTAATATCTTTGGTCGTGGTATCGATATTGAACGTGTCAA
TGTCGTCATCAACTACGATATGGCTGAATC
sequence update 2001.11.22
Translated Amino Acid sequence 
TVGLLDFFVHSHHFPPHLQFICIYILNFNNQKK---

---RILQLASEGALSLKEIKQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATL
SDTIRPICKKFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAV
IFVKSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGI
DIERVNVVINYDMAE
Translated Amino Acid sequence (All Frames) 
Frame A:
TVGLLDFFVHSHHFPPHLQFICIYILNFNNQKK---

---syftisi*rctltqrd*tihs**m*yhariigyekgctkdlqthpsqqtsydvfsyp
l*yhssnl*evyeqsignlhq*w**thspwsstilrtnh*rtke*kth*tlgfirl*ssr
yfrqic*tc*clk*dpprywfpihlyss*prskgsyrtip*iqkl*isyhgch*ylwswy
ry*tcqcrhqlryg*i

Frame B:
llaywiflyihttfhhtfnlfvyif*tlttkkk---

---RILQLASEGALSLKEIKQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATL
SDTIRPICKKFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAV
IFVKSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGI
DIERVNVVINYDMAE

Frame C:
cwptgffctftplsttpsiylyiyfkl*qpkkk---

---vfyn*hlkvhshskrlnnsflmnvipcsnhwi*ermykrssnssqptnkl*cfqlps
lipfvqsvrsl*tihwkstsmmvvnslsmvfnnttyqslknkriknslnswih*tlikpl
fssnlldvlmp*irsskilvshpsvfivtsikrivsnntvnsktlnlvswlplislvvvs
ilnvsmsssttiwln
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE359 (VFE359Q) /CSM/VF/VFE3-C/VFE359Q.Seq.d/                       1148   0.0
SFG247 (SFG247Q) /CSM/SF/SFG2-B/SFG247Q.Seq.d/                       1148   0.0
SFF569 (SFF569Q) /CSM/SF/SFF5-C/SFF569Q.Seq.d/                       1148   0.0
FC-AI06 (FC-AI06Q) /CSM/FC/FC-AI/FC-AI06Q.Seq.d/                     1148   0.0
AFM640 (AFM640Q) /CSM/AF/AFM6-B/AFM640Q.Seq.d/                       1148   0.0
AFL501 (AFL501Q) /CSM/AF/AFL5-A/AFL501Q.Seq.d/                       1148   0.0
AFD666 (AFD666Q) /CSM/AF/AFD6-C/AFD666Q.Seq.d/                       1148   0.0
AFO440 (AFO440Q) /CSM/AF/AFO4-B/AFO440Q.Seq.d/                       1146   0.0
AFM164 (AFM164Q) /CSM/AF/AFM1-C/AFM164Q.Seq.d/                       1146   0.0
VFD348 (VFD348Q) /CSM/VF/VFD3-B/VFD348Q.Seq.d/                       1144   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AW759959|AW759959.1 sl56c07.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-5317 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence.    56   9e-10  2
BF071471|BF071471.1 st59b09.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-857 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence.    56   9e-10  2
AL408654|AL408654.1 T7 end of clone AV0AA009H09 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    38   3e-09  4
AX488925|AX488925.1 Sequence 6225 from Patent WO02053728.          40   4e-09  5
CA251168|CA251168.1 SCQSFL1122D07.g FL1 Saccharum officinarum cDNA clone SCQSFL1122D07 5', mRNA sequence.    48   1e-08  3
BI974435|BI974435.1 saj01e10.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-9068 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence.    52   1e-08  2
CA169742|CA169742.1 SCQGSB1066A04.g SB1 Saccharum officinarum cDNA clone SCQGSB1066A04 5', mRNA sequence.    48   2e-08  3
CA201831|CA201831.1 SCRLFL1008H03.g FL1 Saccharum officinarum cDNA clone SCRLFL1008H03 5', mRNA sequence.    48   2e-08  3
CA252463|CA252463.1 SCVPFL1138E12.g FL1 Saccharum officinarum cDNA clone SCVPFL1138E12 5', mRNA sequence.    48   2e-08  3
AI966749|AI966749.1 sc57c05.y1 Gm-c1016 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1016-513 5' similar to TR:O13792 O13792 PUTATIVE ATP-DEPENDENT RNA HELICASE C17G6.14C. ;, mRNA sequence.    48   2e-07  2
dna update 2003.12.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ010466_1(AJ010466|pid:none) Arabidopsis thaliana mRNA for DEAD...   258   1e-67
GM694469_1(GM694469|pid:none) Sequence 25 from Patent EP1953235.      256   4e-67
GM694505_1(GM694505|pid:none) Sequence 61 from Patent EP1953235....   255   7e-67
(O13792) RecName: Full=ATP-dependent RNA helicase uap56;        ...   255   1e-66
BT068295_1(BT068295|pid:none) Zea mays full-length cDNA clone ZM...   255   1e-66
AJ428513_1(AJ428513|pid:none) Chironomus tentans mRNA for HEL pr...   254   1e-66
D89270_1(D89270|pid:none) Schizosaccharomyces pombe mRNA, partia...   254   1e-66
(A1DL85) RecName: Full=ATP-dependent RNA helicase sub2;         ...   254   1e-66
(Q56XG6) RecName: Full=DEAD-box ATP-dependent RNA helicase 15;  ...   254   2e-66
EU963228_1(EU963228|pid:none) Zea mays clone 259532 spliceosome ...   254   2e-66
protein update 2009. 5.24
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SFG247 is cyt
5' end seq. ID SFG247F
5' end seq. 
>SFG247F.Seq
ACTGTTGGCCTACTGGATTTTTTTGTACATTCACACCACTTTCCACCACACCTTCAATTT
ATTTGTATATATATTTTAAACTTTAACAACCAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 111
3' end seq. ID SFG247Z
3' end seq. 
>SFG247Z.Seq
----------TCGTATTTTACAATTAGCATCTGAAGGTGCACTCTCACTCAAAGAGATTA
AACAATTCATTCTTGATGAATGTGATACCATGCTCGAATCATTGGATATGAGAAAGGATG
TACAAAAGATCTTCAAACTCATCCCAGCCAACAAACAAGTTATGATGTTTTCAGCTACCC
TCTCTGATACCATTCGTCCAATCTGTAAGAAGTTTATGAACAATCCATTGGAAATCTACA
TCAATGATGGTAGTAAACTCACTCTCCATGGTCTTCAACAATACTACGTACCAATCACTG
AAGAACAAAAGAATAAAAAACTCATTGAACTCTTGGATTCATTAGACTTTAATCAAGCCG
TTATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAATAAGATCCTCCAAGATATTG
GTTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAGGATCGTATCGAACAATACC
GTAAATTCAAAAACTTTGAATCTCGTATCATGGTTGCCACTAATATCTTTGGTCGTGGTA
TCGATATTGAACGTGTCAATGTCGTCATCAACTACGATATGGCTGAATC
Length of 3' end seq. 579
Connected seq. ID SFG247P
Connected seq. 
>SFG247P.Seq
ACTGTTGGCCTACTGGATTTTTTTGTACATTCACACCACTTTCCACCACACCTTCAATTT
ATTTGTATATATATTTTAAACTTTAACAACCAAAAAAAAAA----------TCGTATTTT
ACAATTAGCATCTGAAGGTGCACTCTCACTCAAAGAGATTAAACAATTCATTCTTGATGA
ATGTGATACCATGCTCGAATCATTGGATATGAGAAAGGATGTACAAAAGATCTTCAAACT
CATCCCAGCCAACAAACAAGTTATGATGTTTTCAGCTACCCTCTCTGATACCATTCGTCC
AATCTGTAAGAAGTTTATGAACAATCCATTGGAAATCTACATCAATGATGGTAGTAAACT
CACTCTCCATGGTCTTCAACAATACTACGTACCAATCACTGAAGAACAAAAGAATAAAAA
ACTCATTGAACTCTTGGATTCATTAGACTTTAATCAAGCCGTTATTTTCGTCAAATCTGT
TAGACGTGCTGATGCCTTAAATAAGATCCTCCAAGATATTGGTTTCCCATCCATCTGTAT
TCATCGTGACCTCGATCAAAAGGATCGTATCGAACAATACCGTAAATTCAAAAACTTTGA
ATCTCGTATCATGGTTGCCACTAATATCTTTGGTCGTGGTATCGATATTGAACGTGTCAA
TGTCGTCATCAACTACGATATGGCTGAATC
Length of connected seq. 680
Full length Seq ID -
Full length Seq. -
Length of full length seq. -