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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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SFG168
Library SF
(Link to library)
Clone ID SFG168
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID SFG168P
(Link to Original site)
Representative DNA sequence 
>SFG168 (SFG168Q) /CSM/SF/SFG1-C/SFG168Q.Seq.d/
CTGTTGGCCTACTGGATTGTAGTATTTTGTTCATATTACAAATTAAATATCAATACAATT
AAAAAAAGTTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAA
AAAAAAAAACCNAAAAAAAAAXXXXXXXXXXAATGTCCANATTTCCATANATGTGTTNAA
ANACGTGGTGGTATNTTAAGNTGTGAATTTNANCCNCCAAGACAACCAAGATCCCTTGAT
TGGGCTGAAAATGAAAATGA
sequence update 2001.11.22
Translated Amino Acid sequence 
vglldcsilfilqikyqyn*kklklnl*NQFVTKTSNLKKKKTXKK---

---CPXFHXCVXXRGGXLXCEFXPPRQPRSLDWAENEN
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywivvfcsyyklnintikks*n*ickinl*qklvi*kkkkpkkk---

---nvxisixvxkxvvvx*xvnxxxqdnqdpliglkmkm

Frame B:
cwptgl*yfvhitn*isiqlkkvkikfvksicnkn**fkkkknxkk---

---msxfpxmcxxtwwyxkx*ixxxkttkip*lg*k*k*

Frame C:
vglldcsilfilqikyqyn*kklklnl*NQFVTKTSNLKKKKTXKK---

---CPXFHXCVXXRGGXLXCEFXPPRQPRSLDWAENEN
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFG168 (SFG168Q) /CSM/SF/SFG1-C/SFG168Q.Seq.d/                        186   1e-46
SFB648 (SFB648Q) /CSM/SF/SFB6-B/SFB648Q.Seq.d/                        170   7e-42
CHE133 (CHE133Q) /CSM/CH/CHE1-B/CHE133Q.Seq.d/                        170   7e-42
CHD463 (CHD463Q) /CSM/CH/CHD4-C/CHD463Q.Seq.d/                        170   7e-42
CHC366 (CHC366Q) /CSM/CH/CHC3-C/CHC366Q.Seq.d/                        170   7e-42
CHB713 (CHB713Q) /CSM/CH/CHB7-A/CHB713Q.Seq.d/                        170   7e-42
CHB637 (CHB637Q) /CSM/CH/CHB6-B/CHB637Q.Seq.d/                        170   7e-42
CHB347 (CHB347Q) /CSM/CH/CHB3-B/CHB347Q.Seq.d/                        170   7e-42
AFM890 (AFM890Q) /CSM/AF/AFM8-D/AFM890Q.Seq.d/                        170   7e-42
AFA317 (AFA317Q) /CSM/AF/AFA3-A/AFA317Q.Seq.d/                        165   4e-40
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   163   2e-65  4
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.   163   3e-64  6
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   163   3e-59  8
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.   163   7e-53  2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   2e-21  3
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    44   2e-08  2
BX322622|BX322622.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36   0.066  6
AX196294|AX196294.1 Sequence 1 from Patent WO0151627.              40   0.10   3
AL359197|AL359197.20 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-498I18.    46   0.22   1
AC019267|AC019267.3 Homo sapiens clone RP11-7M4, LOW-PASS SEQUENCE SAMPLING.    46   0.22   1
dna update 2003.12.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    68   1e-10
protein update 2009. 1. 9
PSORT 

 psg: 0.33  gvh: 0.49  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.06
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SFG168 is nuc
5' end seq. ID SFG168F
5' end seq. 
>SFG168F.Seq
CTGTTGGCCTACTGGATTGTAGTATTTTGTTCATATTACAAATTAAATATCAATACAATT
AAAAAAAGTTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAA
AAAAAAAAACCNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 151
3' end seq. ID SFG168Z
3' end seq. 
>SFG168Z.Seq
----------AATGTCCANATTTCCATANATGTGTTNAAANACGTGGTGGTATNTTAAGN
TGTGAATTTNANCCNCCAAGACAACCAAGATCCCTTGATTGGGCTGAAAATGAAAATGA
Length of 3' end seq. 109
Connected seq. ID SFG168P
Connected seq. 
>SFG168P.Seq
CTGTTGGCCTACTGGATTGTAGTATTTTGTTCATATTACAAATTAAATATCAATACAATT
AAAAAAAGTTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAA
AAAAAAAAACCNAAAAAAAAA----------AATGTCCANATTTCCATANATGTGTTNAA
ANACGTGGTGGTATNTTAAGNTGTGAATTTNANCCNCCAAGACAACCAAGATCCCTTGAT
TGGGCTGAAAATGAAAATGA
Length of connected seq. 250
Full length Seq ID -
Full length Seq. -
Length of full length seq. -