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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFG167
Library SF
(Link to library)
Clone ID SFG167
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID SFG167P
(Link to Original site)
Representative DNA sequence 
>SFG167 (SFG167Q) /CSM/SF/SFG1-C/SFG167Q.Seq.d/
AATTCATTATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAANCAATANCTAACT
AAGTTAAAAATAAAAAAATAATAANGGATGTTGTTTNTAAAAAATATTGGAGTATTTTTT
ATGATATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTNCTAATGAANAA
NAATGTCATAAATCTTCGGAATGTNTTGTTATAAATTATNCNCCATGTTGNGGNGAACAA
AAATGGGCTTGCTNTAAAGGTNCATTTGATACTTGTNCATATGAAAATAGTTGTTNTANA
AATTCATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTT
ATTAAAATTACAACTCCAACCGAGTNTTNTTGTTCTGATGCCAANATXXXXXXXXXXCCA
CNAGTTNGCTCTTNAAGATGTCCACCAAATCATGAATGTAGATTTTAATGACCAAGGTCA
TCAATGCTGTGTAAAGGGTTCACCCATGATAGATGTTCATTAANATGTCCACATGGCCAT
GAATGTAAAGTTGATCANCAATGGTAAAGAATGTTGCGTCAGATCCCATAGACCACCACC
ACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATGTAAATTTGATGATCATGG
TAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGGTAGAGG
TTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAAGACCACA
CCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGTAAAGTTGA
TCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCTTTAAG
ATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTGTTAAAGT
TCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTGATCAACA
TGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTAAGATGTCC
ACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAAGTAGAAA
TGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTGCCATGAA
AACTGTACCAATGATAAAGAAAATTGTTGNAAAAAGTTCCAGTA
sequence update 2001.11.22
Translated Amino Acid sequence 
nslfnfifnqfklkkxqxltklkikk**XMLFXKNIGVFFMIFLVSKSYATDCNKIXNEX
XCHKSSECXVINYXPCXGEQKWACXKGXFDTCXYENSCXXNSSNNQVVEVSNKCFNLDGF
IKITTPTEXXCSDAX---

---HXXALXDVHQIMNVDFNDQGHQCCVKGSPMIDVH*xvhmamnvklixngkeccvrsh
rppppevcslrcppkheckfddhgkkccvkihcdevcdldcgrgfeckirhdgskccvrs
erphppqhekcnkrcppgheckvdqhgkeccvvahrpppkcslrcpprhecrvnhfgeec
cvkvhhdkcslrcppgheckvdqhgkeccvvahrpppkcslrcppkhecrinhfgeeccv
ksrndcltcedlncerkglhcamktvpmikkivxksss
Translated Amino Acid sequence (All Frames) 
Frame A:
nslfnfifnqfklkkxqxltklkikk**XMLFXKNIGVFFMIFLVSKSYATDCNKIXNEX
XCHKSSECXVINYXPCXGEQKWACXKGXFDTCXYENSCXXNSSNNQVVEVSNKCFNLDGF
IKITTPTEXXCSDAX---

---pxvxsxrcppnhecrf**prssmlckgfthdrcslxcphgheckvdxqw*rmlrqip
*ttttrslfikmptkt*m*i**sw*kmlckdsl**sl*frlw*rf*m*n*t*wfkmlcpf
rkttpttt*km**emptrp*m*s*stwkrmlrccp*tttkmlfkmstkt*m*sqplw*rm
lc*sspr*mfiemstrp*m*s*stwkrmlrccp*tttkmlikmstkt*m*nqslw*rmlc
*k*k*lfnl*rpkl*kkrftlchenctndkencxkkfq

Frame B:
ihysilflinsn*kkxnx*ls*k*knnxgccx*kileyfl*yslyqnpmrrivikxlmxx
nvinlrnvll*ixxhvxxnknglaxkvhlilvhmkivvxxihpitkllkyqinasilmdl
lklqlqpsxxvlmpx---

---HXXALXDVHQIMNVDFNDQGHQCCVKGSPMIDVH*xvhmamnvklixngkeccvrsh
rppppevcslrcppkheckfddhgkkccvkihcdevcdldcgrgfeckirhdgskccvrs
erphppqhekcnkrcppgheckvdqhgkeccvvahrpppkcslrcpprhecrvnhfgeec
cvkvhhdkcslrcppgheckvdqhgkeccvvahrpppkcslrcppkhecrinhfgeeccv
ksrndcltcedlncerkglhcamktvpmikkivxksss

Frame C:
fiiqfyf*siqikkkxixn*vknkkiixdvvxkkywsifydipcikilcdgl**nx**xx
ms*ifgmxcyklxxmlxxtkmgll*rxi*ylxi*k*lxxkfiq*psc*sik*mlqs*wiy
*nynsnrvxlf*cqx---

---tsxlxkmstks*m*ilmtkvinav*rvhp**mfixmstwp*m*s*sxmvknvasdpi
dhhhqkfvh*dahqnmnvnlmimvknvv*rfivmkfvi*ivvevlnvkldmmvqnvvsvq
kdhthhnmknvirdahqamnvklinmeknvallpidhhqnal*dvhqdmnvesttlvknv
vlkfttinvh*dvhqamnvklinmeknvallpidhhqnah*dvhqnmnvesitlvknavl
kvemiv*lvkt*tvkekvyivp*klyq**rkllxkvpv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFG167 (SFG167Q) /CSM/SF/SFG1-C/SFG167Q.Seq.d/                       2109   0.0
AFK549 (AFK549Q) /CSM/AF/AFK5-C/AFK549Q.Seq.d/                       1528   0.0
AHC488 (AHC488Q) /CSM/AH/AHC4-D/AHC488Q.Seq.d/                       1524   0.0
AFN359 (AFN359Q) /CSM/AF/AFN3-C/AFN359Q.Seq.d/                       1524   0.0
CHH443 (CHH443Q) /CSM/CH/CHH4-B/CHH443Q.Seq.d/                       1520   0.0
CHR563 (CHR563Q) /CSM/CH/CHR5-C/CHR563Q.Seq.d/                       1518   0.0
AHI371 (AHI371Q) /CSM/AH/AHI3-C/AHI371Q.Seq.d/                       1518   0.0
AFM858 (AFM858Q) /CSM/AF/AFM8-C/AFM858Q.Seq.d/                       1518   0.0
CHL164 (CHL164Q) /CSM/CH/CHL1-C/CHL164Q.Seq.d/                       1516   0.0
CHF544 (CHF544Q) /CSM/CH/CHF5-B/CHF544Q.Seq.d/                       1516   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117267|AC117267.1 Dictyostelium discoideum chromosome 2 map 4767688-4790343 strain AX4, *** SEQUENCING IN PROGRESS ***.  1296   0.0    10
U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.  1296   0.0    9
AC115610|AC115610.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.  1296   0.0    10
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    66   1e-15  4
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    66   4e-15  4
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.    66   4e-13  6
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    66   3e-12  14
AC124167|AC124167.2 Tetraodon nigroviridis clone GSTNB-42J2, WORKING DRAFT SEQUENCE, 14 unordered pieces.    38   4e-04  6
AC133864|AC133864.7 Medicago truncatula clone mth2-18d12, WORKING DRAFT SEQUENCE, 4 ordered pieces.    42   0.003  4
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    48   0.007  3
dna update 2003.12.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   535   e-150
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   187   6e-47
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...   110   8e-23
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    85   5e-15
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        70   1e-10
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    70   1e-10
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    70   1e-10
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    67   2e-09
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    63   2e-08
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    60   2e-07
protein update 2009. 5.24
PSORT 

 psg: 1.02  gvh: 0.68  alm: 0.51  top: 0.40  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: Golgi

>> prediction for SFG167 is exc
5' end seq. ID SFG167F
5' end seq. 
>SFG167F.Seq
AATTCATTATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAANCAATANCTAACT
AAGTTAAAAATAAAAAAATAATAANGGATGTTGTTTNTAAAAAATATTGGAGTATTTTTT
ATGATATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTNCTAATGAANAA
NAATGTCATAAATCTTCGGAATGTNTTGTTATAAATTATNCNCCATGTTGNGGNGAACAA
AAATGGGCTTGCTNTAAAGGTNCATTTGATACTTGTNCATATGAAAATAGTTGTTNTANA
AATTCATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTT
ATTAAAATTACAACTCCAACCGAGTNTTNTTGTTCTGATGCCAANATNNNNNNNNNN
Length of 5' end seq. 417
3' end seq. ID SFG167Z
3' end seq. 
>SFG167Z.Seq
----------CCACNAGTTNGCTCTTNAAGATGTCCACCAAATCATGAATGTAGATTTTA
ATGACCAAGGTCATCAATGCTGTGTAAAGGGTTCACCCATGATAGATGTTCATTAANATG
TCCACATGGCCATGAATGTAAAGTTGATCANCAATGGTAAAGAATGTTGCGTCAGATCCC
ATAGACCACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATGTAAAT
TTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAG
ATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTT
CAGAAAGACCACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATG
AATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAA
AATGCTCTTTAAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAAT
GTTGTGTTAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTA
AAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCT
CATTAAGATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTG
TTAAAAGTAGAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTAC
ATTGTGCCATGAAAACTGTACCAATGATAAAGAAAATTGTTGNAAAAAGTTCCAGTA
Length of 3' end seq. 827
Connected seq. ID SFG167P
Connected seq. 
>SFG167P.Seq
AATTCATTATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAANCAATANCTAACT
AAGTTAAAAATAAAAAAATAATAANGGATGTTGTTTNTAAAAAATATTGGAGTATTTTTT
ATGATATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTNCTAATGAANAA
NAATGTCATAAATCTTCGGAATGTNTTGTTATAAATTATNCNCCATGTTGNGGNGAACAA
AAATGGGCTTGCTNTAAAGGTNCATTTGATACTTGTNCATATGAAAATAGTTGTTNTANA
AATTCATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTT
ATTAAAATTACAACTCCAACCGAGTNTTNTTGTTCTGATGCCAANAT----------CCA
CNAGTTNGCTCTTNAAGATGTCCACCAAATCATGAATGTAGATTTTAATGACCAAGGTCA
TCAATGCTGTGTAAAGGGTTCACCCATGATAGATGTTCATTAANATGTCCACATGGCCAT
GAATGTAAAGTTGATCANCAATGGTAAAGAATGTTGCGTCAGATCCCATAGACCACCACC
ACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATGTAAATTTGATGATCATGG
TAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGGTAGAGG
TTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAAGACCACA
CCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGTAAAGTTGA
TCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCTTTAAG
ATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTGTTAAAGT
TCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTGATCAACA
TGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTAAGATGTCC
ACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAAGTAGAAA
TGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTGCCATGAA
AACTGTACCAATGATAAAGAAAATTGTTGNAAAAAGTTCCAGTA
Length of connected seq. 1234
Full length Seq ID -
Full length Seq. -
Length of full length seq. -