SFG159
Library SF
(Link to library)
Clone ID SFG159
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SFG159 (SFG159Q) /CSM/SF/SFG1-C/SFG159Q.Seq.d/
ACACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATA
TCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAA
ATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGC
AACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGC
AAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGG
TCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAA
AATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAAC
TGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCGTCTGAACGTCCAAATCACATTTT
AATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATG
TGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence
hkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIA
TVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGK
IYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPC
AVLGWNAAISMIC---


Translated Amino Acid sequence (All Frames)
Frame A:
tqktfsnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**syc
nc*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng*
nlh*s*r*strih*rmrlcnwfk*inqwssdav*tskshfngnlesirfswyhycfqfpm
crtwleccnlndl---


Frame B:
hkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIA
TVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGK
IYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPC
AVLGWNAAISMIC---


Frame C:
tknif**nr*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikllq
llevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwvk
ftlklkvkyknsltyaimqlv*vdqsmvk*crlnvqitf*wkpgih*v*lvslllsishv
pylvgmlqsq*f---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFG159 (SFG159Q) /CSM/SF/SFG1-C/SFG159Q.Seq.d/ 1152 0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/ 1142 0.0
VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/ 1142 0.0
SFK705 (SFK705Q) /CSM/SF/SFK7-A/SFK705Q.Seq.d/ 1142 0.0
SFI562 (SFI562Q) /CSM/SF/SFI5-C/SFI562Q.Seq.d/ 1142 0.0
SFH440 (SFH440Q) /CSM/SF/SFH4-B/SFH440Q.Seq.d/ 1142 0.0
SFG478 (SFG478Q) /CSM/SF/SFG4-D/SFG478Q.Seq.d/ 1142 0.0
SFF818 (SFF818Q) /CSM/SF/SFF8-A/SFF818Q.Seq.d/ 1142 0.0
SFE780 (SFE780Q) /CSM/SF/SFE7-D/SFE780Q.Seq.d/ 1142 0.0
SFE761 (SFE761Q) /CSM/SF/SFE7-C/SFE761Q.Seq.d/ 1142 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 761 0.0 5
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence. 74 4e-12 2
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds. 72 9e-09 1
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds. 46 2e-06 2
BG444603|BG444603.1 GA__Ea0024O05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0024O05f, mRNA sequence. 42 1e-04 2
AW616676|AW616676.1 EST323087 L. hirsutum trichome, Cornell University Lycopersicon hirsutum cDNA clone cLHT12I1 5', mRNA sequence. 54 3e-04 2
BG887757|BG887757.1 EST513608 cSTD Solanum tuberosum cDNA clone cSTD7K13 5' sequence, mRNA sequence. 54 4e-04 2
BI920919|BI920919.1 EST540854 potato microtubers, in vitro-grown Solanum tuberosum cDNA clone cSTE26J22 5' end, mRNA sequence. 54 4e-04 2
BG887113|BG887113.1 EST512964 cSTD Solanum tuberosum cDNA clone cSTD3M14 5' sequence, mRNA sequence. 54 4e-04 2
CD480505|CD480505.1 eca01-25ms1-b04 Eca01 Eschscholzia californica cDNA clone eca01-25ms1-b04 5', mRNA sequence. 56 6e-04 1
dna update 2003.12.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ... 369 e-101
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase... 228 7e-59
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ... 226 3e-58
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326... 223 4e-57
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas... 220 2e-56
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ... 219 5e-56
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti... 217 2e-55
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM... 216 4e-55
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet... 215 6e-55
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 215 6e-55
protein update 2009. 5.24
PSORT

psg: 0.78 gvh: 0.31 alm: 0.29 top: 0.57 tms: 0.07 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
16.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: endoplasmic reticulum
8.0 %: Golgi
8.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for SFG159 is cyt

5' end seq. ID SFG159F
5' end seq.
>SFG159F.Seq
ACACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATA
TCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAA
ATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGC
AACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGC
AAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGG
TCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAA
AATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAAC
TGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCGTCTGAACGTCCAAATCACATTTT
AATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATG
TGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGNNNNNNNNNN
Length of 5' end seq. 591
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -