SFG152
Library SF
(Link to library)
Clone ID SFG152
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16373-1
Original site URL
Representative seq. ID SFG152P
(Link to Original site)
Representative DNA sequence
>SFG152 (SFG152Q) /CSM/SF/SFG1-C/SFG152Q.Seq.d/
ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACNCAAAAGAATGGATCAATGAATTTAAAAAAAGAGGNCCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA
AGAATGTCACCTTATGGAGTTGCACTATNCAGAAATTTATATTCACAACCTAAAATATTT
CAAACATTAAAAAAAAANCAAAAGTTTNTCAAGTAGNGGNGGNGGAGGNGGTANTAGTGG
AGGNGGTAGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAAT
TGAAAATGAAATTATTAACAGGACAGTTTTAATTAGAGTTGGTNCAATTCATACATTTAT
TACATTTGGNGCTGGTTGTAGAATTGGTAAAAACTTAATATTGGTXXXXXXXXXXTGATT
ATGATTCAATTCATCATTTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTATTA
ATAGTAAAGAATCAATAAAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAAAA
ATCAAAAACAACAACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATG
ATGATGAAAATTTAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATCAT
TTGATTATCATCATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCA
TTTGTAATATTGAACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATA
TTATTTTATGTGGTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGA
TAAAGGTTGATACAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATA
AACGTTTAGAATGTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTT
CAAAGTCTGATGCAAAATTTATTGGTTTGGTAAAGTCACAATATATGACTAATCCAAATA
AATATTATTGTATACCAACTTCAACAATTTTAACTTGGATTAGTCAAGTTTCAAAAAAGA
ATTCAATCAATATTTCTTTTTAAGAAAATAATAAAAAAAATAAAGNCA
sequence update 2001.11.22
Translated Amino Acid sequence
lmqk*iiiskkki*kigqlktqkngsmnlkkexqi*rmwifqdlngmvnnyhyfqcqifk
echlmelhyxeiyihnlkyfkh*KKXKSXSSXGGGGGXSGGGSYLNSINIGNIDLNDDLI
ENEIINRTVLIRVGXIHTFITFGAGCRIGKNLIL---

---DYDSIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQHDEKDNEASGS
SNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIEPIKFIGQNEGL
LGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLECNSVPEPGYSES
SLIFSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTWISQVSKKNSINISF*ennkknkx


Translated Amino Acid sequence (All Frames)
Frame A:
inakmnynfkkkdlkdwsiedxkewinefkkrgpnlenvdfsrfewdgeqlslfsmsdfq
rmspygvalxrnlysqpkifqtlkkxqkfxk*xxxrxx*wrx*lfk*y*yw*y*fk**fn
*k*ny*qdsfn*swxnsyiyyiwxwl*nw*klnig---

---*l*fnssfkf****y***w*y***rinkk*www**i**qi*kskttt**kr**skw*
**q****kfk*kpyck***iyitii*lssfr*irkgkretrl*nhl*y*tn*ihwpk*ri
ig*ryyfmwfskgty*fitmsrikdkg*yslsih*kgnsiif***tfrm*lctrtrll*i
linlfkv*ckiywfgkvtiyd*sk*illytnfnnfnld*ssfkkefnqyfflrk**kk*x

Frame B:
lmqk*iiiskkki*kigqlktqkngsmnlkkexqi*rmwifqdlngmvnnyhyfqcqifk
echlmelhyxeiyihnlkyfkh*KKXKSXSSXGGGGGXSGGGSYLNSINIGNIDLNDDLI
ENEIINRTVLIRVGXIHTFITFGAGCRIGKNLIL---

---DYDSIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQHDEKDNEASGS
SNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIEPIKFIGQNEGL
LGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLECNSVPEPGYSES
SLIFSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTWISQVSKKNSINISF*ennkknkx

Frame C:
*cknel*fqkkrfkrlvn*rxkrmdq*i*kkrxkfrecgffki*mgw*tiiiifnvrfsk
nvtlwsctxqkfiftt*nisnikkkxkvxqvxxxexvxvexvvi*ivlilvili*mmi*l
kmklltgqf*lelvqfihllhlxlvvelvkt*yw---

---imiqfii*iliiivlvvvvvlivknq*kvvvvvvnmitnikiknnnmmkkimkqvvv
vtimmmki*iktil*ivvnlhhhhliiii*mn*krkernkimksfvilnqlnslakmkdy
wvkilfyvvfqrnvliyhyvkn*r*rliqfihplkreqyhflminv*nvtlyqnqvtlnp
h*sfqslmqnllvw*shni*liqiniivyqlqqf*lglvkfqkriqsiflfkkiikkikx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFG152 (SFG152Q) /CSM/SF/SFG1-C/SFG152Q.Seq.d/ 2038 0.0
SFK662 (SFK662Q) /CSM/SF/SFK6-C/SFK662Q.Seq.d/ 1382 0.0
CFE611 (CFE611Q) /CSM/CF/CFE6-A/CFE611Q.Seq.d/ 1382 0.0
AFF227 (AFF227Q) /CSM/AF/AFF2-B/AFF227Q.Seq.d/ 1382 0.0
AFE485 (AFE485Q) /CSM/AF/AFE4-D/AFE485Q.Seq.d/ 1382 0.0
AFB247 (AFB247Q) /CSM/AF/AFB2-B/AFB247Q.Seq.d/ 1382 0.0
SFE612 (SFE612Q) /CSM/SF/SFE6-A/SFE612Q.Seq.d/ 1374 0.0
AFE138 (AFE138Q) /CSM/AF/AFE1-B/AFE138Q.Seq.d/ 1374 0.0
SFJ824 (SFJ824Q) /CSM/SF/SFJ8-A/SFJ824Q.Seq.d/ 1368 0.0
CFF254 (CFF254Q) /CSM/CF/CFF2-C/CFF254Q.Seq.d/ 1358 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 44 6e-19 25
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 50 1e-18 28
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 42 5e-18 27
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 2e-17 28
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces. 52 4e-17 21
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 42 3e-16 20
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 52 5e-15 25
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 46 2e-14 20
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2. 48 2e-14 19
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 40 4e-14 26
dna update 2003.12.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116305_101(AC116305|pid:none) Dictyostelium discoideum chromos... 47 0.001
AB299373_1(AB299373|pid:none) Ciona intestinalis Ci-Elf mRNA for... 34 8.6

protein update 2009. 1. 9
PSORT

psg: 0.82 gvh: 0.37 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal

>> prediction for SFG152 is cyt

5' end seq. ID SFG152F
5' end seq.
>SFG152F.Seq
ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACNCAAAAGAATGGATCAATGAATTTAAAAAAAGAGGNCCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA
AGAATGTCACCTTATGGAGTTGCACTATNCAGAAATTTATATTCACAACCTAAAATATTT
CAAACATTAAAAAAAAANCAAAAGTTTNTCAAGTAGNGGNGGNGGAGGNGGTANTAGTGG
AGGNGGTAGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAAT
TGAAAATGAAATTATTAACAGGACAGTTTTAATTAGAGTTGGTNCAATTCATACATTTAT
TACATTTGGNGCTGGTTGTAGAATTGGTAAAAACTTAATATTGGTNNNNNNNNNN
Length of 5' end seq. 475
3' end seq. ID SFG152Z
3' end seq.
>SFG152Z.Seq
----------TGATTATGATTCAATTCATCATTTAAATTCTAATAATAATAGTATTAGTA
GTAGTGGTAGTATTAATAGTAAAGAATCAATAAAAAGTAGTGGTGGTGGTAGTGAATATG
ATAACAAATATAAAAATCAAAAACAACAACATGATGAAAAAGATAATGAAGCAAGTGGTA
GTAGTAACAATAATGATGATGAAAATTTAAATAAAAACCATATTGTAAATAGTAGTGAAT
TTACATCACCATCATTTGATTATCATCATTTAGATGAATTAGAAAAGGAAAGAGAGAAAC
AAGATTATGAAATCATTTGTAATATTGAACCAATTAAATTCATTGGCCAAAATGAAGGAT
TATTGGGTAAAGATATTATTTTATGTGGTTTTCCAAAGGAACGTATTGATTTATCACTAT
GTCAAGAATTAAAGATAAAGGTTGATACAGTTTATCCATCCATTGAAAAGGGAACAGTAT
CATTTTCTGATGATAAACGTTTAGAATGTAACTCTGTACCAGAACCAGGTTACTCTGAAT
CCTCATTAATCTTTTCAAAGTCTGATGCAAAATTTATTGGTTTGGTAAAGTCACAATATA
TGACTAATCCAAATAAATATTATTGTATACCAACTTCAACAATTTTAACTTGGATTAGTC
AAGTTTCAAAAAAGAATTCAATCAATATTTCTTTTTAAGAAAATAATAAAAAAAATAAAG
NCA
Length of 3' end seq. 713
Connected seq. ID SFG152P
Connected seq.
>SFG152P.Seq
ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACNCAAAAGAATGGATCAATGAATTTAAAAAAAGAGGNCCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA
AGAATGTCACCTTATGGAGTTGCACTATNCAGAAATTTATATTCACAACCTAAAATATTT
CAAACATTAAAAAAAAANCAAAAGTTTNTCAAGTAGNGGNGGNGGAGGNGGTANTAGTGG
AGGNGGTAGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAAT
TGAAAATGAAATTATTAACAGGACAGTTTTAATTAGAGTTGGTNCAATTCATACATTTAT
TACATTTGGNGCTGGTTGTAGAATTGGTAAAAACTTAATATTGGT----------TGATT
ATGATTCAATTCATCATTTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTATTA
ATAGTAAAGAATCAATAAAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAAAA
ATCAAAAACAACAACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATG
ATGATGAAAATTTAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATCAT
TTGATTATCATCATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCA
TTTGTAATATTGAACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATA
TTATTTTATGTGGTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGA
TAAAGGTTGATACAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATA
AACGTTTAGAATGTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTT
CAAAGTCTGATGCAAAATTTATTGGTTTGGTAAAGTCACAATATATGACTAATCCAAATA
AATATTATTGTATACCAACTTCAACAATTTTAACTTGGATTAGTCAAGTTTCAAAAAAGA
ATTCAATCAATATTTCTTTTTAAGAAAATAATAAAAAAAATAAAGNCA
Length of connected seq. 1178
Full length Seq ID -
Full length Seq. -
Length of full length seq. -