SFG127
Library SF
(Link to library)
Clone ID SFG127
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13888-1
Original site URL
Representative seq. ID SFG127Z
(Link to Original site)
Representative DNA sequence
>SFG127 (SFG127Q) /CSM/SF/SFG1-B/SFG127Q.Seq.d/
XXXXXXXXXXTCGTCCAGTACAAGGTTTACTCTCTGCTAGAGATTTCTTAAATGGTTTAG
CTTTCCGTGTATTCCATGCAACTCAATATATTAGACATCCATCCGTACCATTATATACAC
CAGAACCAGATTGTTGTCATGAATTATTAGGTCATGTTCCATTATTAGCTGATCCTGATT
TCGCTGATTTTAGTCAAGAGATTGGTTTAGCTTCAATTGGTGCTTCTGATGAAGATATTC
AATTACTTAGTACTTGTTATTGGTTTACAGTTGAATTTGGATTATGTAAAGAAGGTGATA
CAATTAGAGCATATGGTGCAGGTATTTTATCATCAACAGGTGAAATGGAACACTTTTTAA
CTGATAAAGCAAAAAAATTACCATTTAATCCATTTGACGCATGCAATACTGAATATCCAA
TTACAACATTCCAACCACTTTACTATGTTGCAGAAAGTTTCCAAAAAGCAAAAGAACAAA
TGAGACAATTTGCTGATAGCTTTAAAAAACCATTTTCAATTCGTTACAATCCATACACTC
AATCAATTGAAAAAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence
---RPVQGLLSARDFLNGLAFRVFHATQYIRHPSVPLYTPEPDCCHELLGHVPLLADPDF
ADFSQEIGLASIGASDEDIQLLSTCYWFTVEFGLCKEGDTIRAYGAGILSSTGEMEHFLT
DKAKKLPFNPFDACNTEYPITTFQPLYYVAESFQKAKEQMRQFADSFKKPFSIRYNPYTQ
SIEK


Translated Amino Acid sequence (All Frames)
Frame A:
---RPVQGLLSARDFLNGLAFRVFHATQYIRHPSVPLYTPEPDCCHELLGHVPLLADPDF
ADFSQEIGLASIGASDEDIQLLSTCYWFTVEFGLCKEGDTIRAYGAGILSSTGEMEHFLT
DKAKKLPFNPFDACNTEYPITTFQPLYYVAESFQKAKEQMRQFADSFKKPFSIRYNPYTQ
SIEK


Frame B:
---vqykvyslleis*mv*lsvysmqlnildihpyhyihqnqivvmny*vmfhy*lilis
lilvkrlv*lqlvllmkifnylvlviglqlnldyvkkviqlehmvqvfyhqqvkwntf*l
ikqknyhlihlthailniqlqhsnhftmlqkvskkqknk*dnllialknhfqfvtihtln
qlkk


Frame C:
---sstrftlc*rflkwfsfpcipcnsiy*tsirtiiytrtrlls*iirscsiis*s*fr
*f*srdwfsfnwcf**rysit*ylllvys*iwim*rr*yn*siwcryfiinr*ngtlfn*
*skkiti*si*rmqy*isnynipttllccrkfpkskrtnetic**l*ktifnslqsihsi
n*kn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFG127 (SFG127Q) /CSM/SF/SFG1-B/SFG127Q.Seq.d/ 1041 0.0
SSM681 (SSM681Q) /CSM/SS/SSM6-D/SSM681Q.Seq.d/ 1033 0.0
SFK790 (SFK790Q) /CSM/SF/SFK7-D/SFK790Q.Seq.d/ 1033 0.0
SFK632 (SFK632Q) /CSM/SF/SFK6-B/SFK632Q.Seq.d/ 1033 0.0
SFK602 (SFK602Q) /CSM/SF/SFK6-A/SFK602Q.Seq.d/ 1033 0.0
SFK580 (SFK580Q) /CSM/SF/SFK5-D/SFK580Q.Seq.d/ 1033 0.0
SFJ456 (SFJ456Q) /CSM/SF/SFJ4-C/SFJ456Q.Seq.d/ 1033 0.0
SFJ372 (SFJ372Q) /CSM/SF/SFJ3-C/SFJ372Q.Seq.d/ 1033 0.0
SFI142 (SFI142Q) /CSM/SF/SFI1-B/SFI142Q.Seq.d/ 1033 0.0
SFG796 (SFG796Q) /CSM/SF/SFG7-D/SFG796Q.Seq.d/ 1033 0.0

own update 2001.11.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG225890|0 90 4e-14 1
BU770913| (AF031034) tryptophan hydroxylase; SmTPH [Schistosoma mansoni], mRNA sequence. 48 0.005 2
CC852580|CC852580.1 NDL.130C7.T7 Notre Dame Liverpool Aedes aegypti genomic clone NotreDame Liverpool-130C7, genomic survey sequence. 52 0.008 1
CC139550|CC139550.1 NDL.48G14.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.48G14, DNA sequence. 52 0.008 1
BM900656|BM900656.1 rc40a10.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to TR:Q23438 Q23438 COSMID ZK1290. ;, mRNA sequence. 34 0.009 3
AC026213|AC026213.4 Homo sapiens chromosome 3 clone RP11-708D10 map 3p, WORKING DRAFT SEQUENCE, 12 unordered pieces. 40 0.037 6
AF030336|AF030336.1 Schistosoma mansoni tyrosine hydroxylase (TH) mRNA, complete cds. 42 0.12 2
AP003800|AP003800.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1014_E09. 36 0.20 6
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome. 38 0.36 13
AC010305|AC010305.3 Homo sapiens chromosome 16 clone CTB-45A8, complete sequence. 38 0.46 2
dna update 2003.12.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54XS1) RecName: Full=Probable phenylalanine-4-hydroxylase; ... 377 e-103
BC056537_1(BC056537|pid:none) Danio rerio phenylalanine hydroxyl... 266 3e-70
AY330224_1(AY330224|pid:none) Danio rerio Pah mRNA, complete cds... 266 3e-70
AY615523_1(AY615523|pid:none) Gallus gallus neuronal tryptophan ... 263 3e-69
(Q0EAB8) RecName: Full=Tryptophan 5-hydroxylase 2; EC=1... 261 1e-68
EU730760_1(EU730760|pid:none) Micropogonias undulatus tryptophan... 260 1e-68
DQ479389_1(DQ479389|pid:none) Aplysia californica tryptophan 5-m... 260 2e-68
AY616134_1(AY616134|pid:none) Danio rerio tryptophan hydroxylase... 259 2e-68
(Q8IWU9) RecName: Full=Tryptophan 5-hydroxylase 2; EC=1... 259 2e-68
BC114499_1(BC114499|pid:none) Homo sapiens tryptophan hydroxylas... 259 2e-68
protein update 2009. 5.24
PSORT

psg: 0.74 gvh: 0.42 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: mitochondrial
28.0 %: nuclear
16.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for SFG127 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFG127Z
3' end seq.
>SFG127Z.Seq
----------TCGTCCAGTACAAGGTTTACTCTCTGCTAGAGATTTCTTAAATGGTTTAG
CTTTCCGTGTATTCCATGCAACTCAATATATTAGACATCCATCCGTACCATTATATACAC
CAGAACCAGATTGTTGTCATGAATTATTAGGTCATGTTCCATTATTAGCTGATCCTGATT
TCGCTGATTTTAGTCAAGAGATTGGTTTAGCTTCAATTGGTGCTTCTGATGAAGATATTC
AATTACTTAGTACTTGTTATTGGTTTACAGTTGAATTTGGATTATGTAAAGAAGGTGATA
CAATTAGAGCATATGGTGCAGGTATTTTATCATCAACAGGTGAAATGGAACACTTTTTAA
CTGATAAAGCAAAAAAATTACCATTTAATCCATTTGACGCATGCAATACTGAATATCCAA
TTACAACATTCCAACCACTTTACTATGTTGCAGAAAGTTTCCAAAAAGCAAAAGAACAAA
TGAGACAATTTGCTGATAGCTTTAAAAAACCATTTTCAATTCGTTACAATCCATACACTC
AATCAATTGAAAAAAC
Length of 3' end seq. 546
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -