SFF870
Library SF
(Link to library)
Clone ID SFF870
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15574-1|Contig-U16594-1
Original site URL
Representative seq. ID SFF870P
(Link to Original site)
Representative DNA sequence
>SFF870 (SFF870Q) /CSM/SF/SFF8-C/SFF870Q.Seq.d/
ATGCAAATAGAAAGGCTAGTATATGTATATTAAATTTATATTTATATAAATCCTAAATTA
ATAATAATAATAAAAAAAATAAAAAAAACTCGATCAGTTGGTTTGTTCGCATCATTATTT
TATTTTTTTTCCAAAAAAAAATNTAAAAAAAAAAXXXXXXXXXXAAGCTGATNATNATGN
AGNNNANGNTGATCATGNAGNTNATCATCATCATCATCANNNAGGCTGANGTTGATNATC
ATNANGNTNTTNATCANNATGAAGTAGCNGNNGCTGTTCATCANGCTNAAGCAGCNGANG
NTGTTNATCANGNTGTAGTAGTTNATGNNGTTGTNGCTNTTNNTCATGNTCANGCTNCTC
NNGNTNAAGCAGNTGATNANGCTNCTCANGCTNNAGCAGTTGATCANGCAGTTGATNANG
CTNCTNAAGCNGNAGCAGNTGATCANGCTCCTCNAGCTNNNGCTGNTCATCANGNTNAAG
CNGNNGCNNNNGCTNCTCNTCANGCNNNAGCTGNTCATCATNNAGCTNATCATCATCATC
ATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATC
ATCATCATCATCATCATCATCATCATCATCATCATNNTGNTNNTCGCCATCATCATCAGT
CATCATCNTCATNNGTCATCNTCNNCATNANAATCNTNNNNNTCCTCA
sequence update 2001. 6. 1
Translated Amino Acid sequence
mqierlvyvy*IYIYINPKLIIIIKKIKKTRSVGLFASLFYFFSKKKXKKK---

---KLXXMXXXXIMXXIIIIIXXAXVDXHXXXXXXEVAXAVHXAXAAXXVXXXVVVXXVV
AXXHXXAXXXXAXDXAXXAXAVDXAVDXAXXAXAXDXAPXAXAXHXXXAXAXAXXXAXAX
HHXAXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXRHHHQSSSSXVIXXXXI
XXXL


Translated Amino Acid sequence (All Frames)
Frame A:
mqierlvyvy*IYIYINPKLIIIIKKIKKTRSVGLFASLFYFFSKKKXKKK---

---KLXXMXXXXIMXXIIIIIXXAXVDXHXXXXXXEVAXAVHXAXAAXXVXXXVVVXXVV
AXXHXXAXXXXAXDXAXXAXAVDXAVDXAXXAXAXDXAPXAXAXHXXXAXAXAXXXAXAX
HHXAXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXRHHHQSSSSXVIXXXXI
XXXL

Frame B:
ck*kg*ymyikfifi*iln*****kk*kkldqlvcshhyfiffpkknxkkk---

---s*xxxxxx*sxxxsssssxrlxlxixxxxixmk*xxlfixlkqxxxxixx**xmxlx
lxxmxxllxxkqxxxllxlxqlixqlxxllkxxqxixllxlxlxixxkxxxxllxxxxlx
ixxliiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiixxxxaiiishhxhxsssxxxs
xxss

Frame C:
anrkasicilnlylyks*innnnkknkknsiswfvriiilfffqkkx*kk---

---adxxxxxxdhxxxhhhhxxg*x*xsxxxxsx*ssxxcssxxssxxcxsxcssxxxcx
xxsxsxxsxxsx*xxxsxxss*sxs*xxxxsxsx*sxsssxxxssxxsxxxxxssxxsxs
sxsxsssssssssssssssssssssssssssssssssssxxxspsssviixxxhxxhxnx
xxp

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFF870 (SFF870Q) /CSM/SF/SFF8-C/SFF870Q.Seq.d/ 168 7e-41
SFL362 (SFL362Q) /CSM/SF/SFL3-C/SFL362Q.Seq.d/ 141 2e-32
CFE269 (CFE269Q) /CSM/CF/CFE2-C/CFE269Q.Seq.d/ 141 2e-32
CFD526 (CFD526Q) /CSM/CF/CFD5-B/CFD526Q.Seq.d/ 141 2e-32
AFO726 (AFO726Q) /CSM/AF/AFO7-B/AFO726Q.Seq.d/ 141 2e-32
AFO549 (AFO549Q) /CSM/AF/AFO5-C/AFO549Q.Seq.d/ 141 2e-32
AFO315 (AFO315Q) /CSM/AF/AFO3-A/AFO315Q.Seq.d/ 141 2e-32
AFN202 (AFN202Q) /CSM/AF/AFN2-A/AFN202Q.Seq.d/ 141 2e-32
AFM406 (AFM406Q) /CSM/AF/AFM4-A/AFM406Q.Seq.d/ 141 2e-32
AFL888 (AFL888Q) /CSM/AF/AFL8-D/AFL888Q.Seq.d/ 141 2e-32

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 141 8e-50 6
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence. 36 3e-06 8
AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 40 4e-06 8
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence. 36 8e-06 9
AY048187|AY048187.1 Bombyx mori strain Xiafang mitochondrion, complete genome. 36 9e-06 6
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence. 38 1e-05 9
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 38 3e-05 6
AL034557|AL034557.8 Plasmodium falciparum MAL4P1. 36 5e-05 8
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence. 42 1e-04 9
AE014816|AE014816.1 Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence. 34 1e-04 9
dna update 2003.12.26
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 217,064,196
protein update 2009. 5.24
PSORT

psg: 0.76 gvh: 0.46 alm: 0.32 top: -0.03 tms: 0.07 mit: 0.32 mip: 0.05
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.32 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: endoplasmic reticulum
16.0 %: Golgi
16.0 %: mitochondrial
16.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: vesicles of secretory system

>> prediction for SFF870 is cyt

5' end seq. ID SFF870F
5' end seq.
>SFF870F.Seq
ATGCAAATAGAAAGGCTAGTATATGTATATTAAATTTATATTTATATAAATCCTAAATTA
ATAATAATAATAAAAAAAATAAAAAAAACTCGATCAGTTGGTTTGTTCGCATCATTATTT
TATTTTTTTTCCAAAAAAAAATNTAAAAAAAAAA----------
Length of 5' end seq. 154
3' end seq. ID SFF870Z
3' end seq.
>SFF870Z.Seq
----------AAGCTGATNATNATGNAGNNNANGNTGATCATGNAGNTNATCATCATCAT
CATCANNNAGGCTGANGTTGATNATCATNANGNTNTTNATCANNATGAAGTAGCNGNNGC
TGTTCATCANGCTNAAGCAGCNGANGNTGTTNATCANGNTGTAGTAGTTNATGNNGTTGT
NGCTNTTNNTCATGNTCANGCTNCTCNNGNTNAAGCAGNTGATNANGCTNCTCANGCTNN
AGCAGTTGATCANGCAGTTGATNANGCTNCTNAAGCNGNAGCAGNTGATCANGCTCCTCN
AGCTNNNGCTGNTCATCANGNTNAAGCNGNNGCNNNNGCTNCTCNTCANGCNNNAGCTGN
TCATCATNNAGCTNATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCA
TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCA
TNNTGNTNNTCGCCATCATCATCAGTCATCATCNTCATNNGTCATCNTCNNCATNANAAT
CNTNNNNNTCCTCA
Length of 3' end seq. 544
Connected seq. ID SFF870P
Connected seq.
>SFF870P.Seq
ATGCAAATAGAAAGGCTAGTATATGTATATTAAATTTATATTTATATAAATCCTAAATTA
ATAATAATAATAAAAAAAATAAAAAAAACTCGATCAGTTGGTTTGTTCGCATCATTATTT
TATTTTTTTTCCAAAAAAAAATNTAAAAAAAAAA----------AAGCTGATNATNATGN
AGNNNANGNTGATCATGNAGNTNATCATCATCATCATCANNNAGGCTGANGTTGATNATC
ATNANGNTNTTNATCANNATGAAGTAGCNGNNGCTGTTCATCANGCTNAAGCAGCNGANG
NTGTTNATCANGNTGTAGTAGTTNATGNNGTTGTNGCTNTTNNTCATGNTCANGCTNCTC
NNGNTNAAGCAGNTGATNANGCTNCTCANGCTNNAGCAGTTGATCANGCAGTTGATNANG
CTNCTNAAGCNGNAGCAGNTGATCANGCTCCTCNAGCTNNNGCTGNTCATCANGNTNAAG
CNGNNGCNNNNGCTNCTCNTCANGCNNNAGCTGNTCATCATNNAGCTNATCATCATCATC
ATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATC
ATCATCATCATCATCATCATCATCATCATCATCATNNTGNTNNTCGCCATCATCATCAGT
CATCATCNTCATNNGTCATCNTCNNCATNANAATCNTNNNNNTCCTCA
Length of connected seq. 698
Full length Seq ID -
Full length Seq. -
Length of full length seq. -