AFI284
Library AF
(Link to library)
Clone ID AFI284
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16465-1
Original site URL
Representative seq. ID AFI284Z
(Link to Original site)
Representative DNA sequence
>AFI284 (AFI284Q) /CSM/AF/AFI2-D/AFI284Q.Seq.d/
XXXXXXXXXXACAATTAGCATCTGAAGGTGCACTCTCACTCAAAAGAGATTAAACAATTC
ATTCTTGATGAATGTGATACCATGCTCGAATCATTGGATATGAGAAAGGATGTACAAAAG
ATCTTCAAACTCATCCCAGCCAACAAACAAGTTATGATGTTTTCAGCTACCCTCTCTGAT
ACCATTCGTCCAATCTGTAAGAAGTTTATGAACAATCCATTGGAAATCTACATCAATGAT
GGTAGTAAACTCACTCTCCATGGTCTTCAACAATACTACGTACCAATCACTGAAGAACAA
AAGAATAAAAAACTCATTGAACTCTTGGATTCATTAGACTTTAATCAAGCCGTTATTTTC
GTCAAATCTGTTAGACGTGCTGATGCCTTAAATAAGATCCTCCAAGATATTGGTTTCCCA
TCCATCTGTATTCATCGTGACCTCGATCAAAAGGATCGTATCGAACAATACCGTAAATTC
AAAAACTTTGAATCTCGTATCATGGTTGCCACTAATATCTTTGGTCGTGGTATCGATATT
GAACGTGTCAATGTCGTCATCA
sequence update 2001. 6. 2
Translated Amino Acid sequence
---n*HLKVHSHSKEIKQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATLSDT
IRPICKKFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAVIFV
KSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGIDIE
RVNVVI


Translated Amino Acid sequence (All Frames)
Frame A:
---qlasegalslkrd*tihs**m*yhariigyekgctkdlqthpsqqtsydvfsypl*y
hssnl*evyeqsignlhq*w**thspwsstilrtnh*rtke*kth*tlgfirl*ssryfr
qic*tc*clk*dpprywfpihlyss*prskgsyrtip*iqkl*isyhgch*ylwswyry*
tcqcrh


Frame B:
---n*HLKVHSHSKEIKQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATLSDT
IRPICKKFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAVIFV
KSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGIDIE
RVNVVI


Frame C:
---isi*rctltqkrlnnsflmnvipcsnhwi*ermykrssnssqptnkl*cfqlpslip
fvqsvrsl*tihwkstsmmvvnslsmvfnnttyqslknkriknslnswih*tlikplfss
nlldvlmp*irsskilvshpsvfivtsikrivsnntvnsktlnlvswlplislvvvsiln
vsmsss


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFA314 (VFA314Q) /CSM/VF/VFA3-A/VFA314Q.Seq.d/ 1094 0.0
AFM631 (AFM631Q) /CSM/AF/AFM6-B/AFM631Q.Seq.d/ 1094 0.0
AFI284 (AFI284Q) /CSM/AF/AFI2-D/AFI284Q.Seq.d/ 1094 0.0
VFE359 (VFE359Q) /CSM/VF/VFE3-C/VFE359Q.Seq.d/ 1078 0.0
VFD348 (VFD348Q) /CSM/VF/VFD3-B/VFD348Q.Seq.d/ 1078 0.0
VFD181 (VFD181Q) /CSM/VF/VFD1-D/VFD181Q.Seq.d/ 1078 0.0
VFA442 (VFA442Q) /CSM/VF/VFA4-B/VFA442Q.Seq.d/ 1078 0.0
SFG247 (SFG247Q) /CSM/SF/SFG2-B/SFG247Q.Seq.d/ 1078 0.0
SFF569 (SFF569Q) /CSM/SF/SFF5-C/SFF569Q.Seq.d/ 1078 0.0
FC-AI06 (FC-AI06Q) /CSM/FC/FC-AI/FC-AI06Q.Seq.d/ 1078 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AW759959|AW759959.1 sl56c07.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-5317 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence. 56 9e-10 2
BF071471|BF071471.1 st59b09.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-857 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence. 56 9e-10 2
AL408654|AL408654.1 T7 end of clone AV0AA009H09 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 38 1e-09 4
AX488925|AX488925.1 Sequence 6225 from Patent WO02053728. 40 2e-09 5
CA251168|CA251168.1 SCQSFL1122D07.g FL1 Saccharum officinarum cDNA clone SCQSFL1122D07 5', mRNA sequence. 48 8e-09 3
CA169742|CA169742.1 SCQGSB1066A04.g SB1 Saccharum officinarum cDNA clone SCQGSB1066A04 5', mRNA sequence. 48 1e-08 3
CA201831|CA201831.1 SCRLFL1008H03.g FL1 Saccharum officinarum cDNA clone SCRLFL1008H03 5', mRNA sequence. 48 1e-08 3
BI974435|BI974435.1 saj01e10.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-9068 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence. 52 1e-08 2
CA252463|CA252463.1 SCVPFL1138E12.g FL1 Saccharum officinarum cDNA clone SCVPFL1138E12 5', mRNA sequence. 48 1e-08 3
BI742220|BI742220.1 kt91h02.y1 Strongyloides ratti L3 adult pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:HE47_CAEEL Q18212 PROBABLE ATP-DEPENDENT RNA HELICASE P47 HOMOLOG. [1] ;, mRNA sequence. 38 1e-07 4
dna update 2004. 6.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

D89270_1(D89270|pid:none) Schizosaccharomyces pombe mRNA, partia... 242 5e-63
(O13792) RecName: Full=ATP-dependent RNA helicase uap56; ... 241 7e-63
AM920437_2400(AM920437|pid:none) Penicillium chrysogenum Wiscons... 239 4e-62
(A1DL85) RecName: Full=ATP-dependent RNA helicase sub2; ... 239 4e-62
(A1CMQ7) RecName: Full=ATP-dependent RNA helicase sub2; ... 239 4e-62
FM992691_22(FM992691|pid:none) Candida dubliniensis CD36 chromos... 237 1e-61
(Q1DI07) RecName: Full=ATP-dependent RNA helicase SUB2; ... 237 1e-61
AJ428513_1(AJ428513|pid:none) Chironomus tentans mRNA for HEL pr... 236 2e-61
AJ010466_1(AJ010466|pid:none) Arabidopsis thaliana mRNA for DEAD... 236 3e-61
(A6R603) RecName: Full=ATP-dependent RNA helicase SUB2; ... 236 4e-61
protein update 2009. 4.22
PSORT

psg: 0.57 gvh: 0.46 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for AFI284 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFI284Z
3' end seq.
>AFI284Z.Seq
----------ACAATTAGCATCTGAAGGTGCACTCTCACTCAAAAGAGATTAAACAATTC
ATTCTTGATGAATGTGATACCATGCTCGAATCATTGGATATGAGAAAGGATGTACAAAAG
ATCTTCAAACTCATCCCAGCCAACAAACAAGTTATGATGTTTTCAGCTACCCTCTCTGAT
ACCATTCGTCCAATCTGTAAGAAGTTTATGAACAATCCATTGGAAATCTACATCAATGAT
GGTAGTAAACTCACTCTCCATGGTCTTCAACAATACTACGTACCAATCACTGAAGAACAA
AAGAATAAAAAACTCATTGAACTCTTGGATTCATTAGACTTTAATCAAGCCGTTATTTTC
GTCAAATCTGTTAGACGTGCTGATGCCTTAAATAAGATCCTCCAAGATATTGGTTTCCCA
TCCATCTGTATTCATCGTGACCTCGATCAAAAGGATCGTATCGAACAATACCGTAAATTC
AAAAACTTTGAATCTCGTATCATGGTTGCCACTAATATCTTTGGTCGTGGTATCGATATT
GAACGTGTCAATGTCGTCATCA
Length of 3' end seq. 552
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -