>SFF811 (SFF811Q) /CSM/SF/SFF8-A/SFF811Q.Seq.d/
XXXXXXXXXXCTATTGGTACCANACGTTTCGATAGTNAGGTTAGTGGTGATAGAGAGGTG
CAACGTACAATGTTAGAGTTACTCAATCAATTGGATGGTTTCAGTAGTGATGCAAATATC
AAAGTTATCGCCGCCACCAATCGTATTGATATCTTGGATCCTGCTCTCTTGAGATCTGGT
CGTTTGGATAGAAAGATTGNATTCCCATTACCAAATGAAGAGGCTAGAGCTCATATCCTT
CAAATTCACTCTCGTAAGATGAACGTTTCCGCTGATGTTAATTTCGATGAGTTGGCACGT
TCCTCTGAAGATTTCAATGGCGCTCAATTAAAAGCAGTTTGTGTCGAAGCANGTANATTG
CACTT

---IGTXRFDSXVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGR
LDRKIXFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAXXLH

Frame A:
---ywyxtfr*xg*w**rgatynvrvtqsigwfq**ckyqsyrrhqsy*ylgscsleiws
fg*kdxipitk*rg*ssypsnsls*derfr*c*fr*vgtfl*rfqwrsiksslcrsxxia
l


Frame B:
---IGTXRFDSXVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGR
LDRKIXFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAXXLH


Frame C:
---lvpxvsivrlvviercnvqc*sysinwmvsvvmqisklspppivliswills*dlvv
wierlxshyqmkrlelisfkftlvr*tfplmlismswhvplkismaln*kqfvskxvxct

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFF811 (SFF811Q) /CSM/SF/SFF8-A/SFF811Q.Seq.d/                        674   0.0
VFB562 (VFB562Q) /CSM/VF/VFB5-C/VFB562Q.Seq.d/                        656   0.0
SFL201 (SFL201Q) /CSM/SF/SFL2-A/SFL201Q.Seq.d/                        656   0.0
SFI130 (SFI130Q) /CSM/SF/SFI1-B/SFI130Q.Seq.d/                        656   0.0
CFI188 (CFI188Q) /CSM/CF/CFI1-D/CFI188Q.Seq.d/                        656   0.0
AFN152 (AFN152Q) /CSM/AF/AFN1-C/AFN152Q.Seq.d/                        656   0.0
AFL812 (AFL812Q) /CSM/AF/AFL8-A/AFL812Q.Seq.d/                        656   0.0
FCL-AC23 (FCL-AC23Q) /CSM/FCL/FCL-AC/FCL-AC23Q.Seq.d/                 638   0.0
VSF680 (VSF680Q) /CSM/VS/VSF6-D/VSF680Q.Seq.d/                        412   e-114
SLA895 (SLA895Q) /CSM/SL/SLA8-D/SLA895Q.Seq.d/                        252   3e-66

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI510050|BI510050.1 BB170023B10G11.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170023B10G11 5', mRNA sequence.    56   4e-24  4
BI507586|BI507586.1 BB170013B10D07 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170013B10D07 5', mRNA sequence.    56   5e-24  4
BI506653|BI506653.1 BB170020B20A08 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170020B20A08 5', mRNA sequence.    56   6e-24  4
L16579|L16579.1 Dictyostelium discoideum HIV1 TAT-binding protein homologue (TBP1O) mRNA, 3' end.    84   5e-18  3
BI517212|BI517212.1 BB160024B20B03 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160024B20B03 5', mRNA sequence.    56   5e-17  3
CF828399|CF828399.1 UCRCR01_01I11_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01I11, mRNA sequence.    46   2e-13  3
CF828518|CF828518.1 UCRCR01_01L07_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01L07, mRNA sequence.    46   3e-13  3
CD850824|CD850824.1 DH0AL15ZD03ZM1 HaDevR5 Helianthus annuus cDNA clone HaDevR515D03, mRNA sequence.    48   6e-12  3
BQ966728|BQ966728.1 QHB27L08.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB27L08, mRNA sequence.    48   9e-12  3
BU049328|BU049328.1 1111005E11.y3 1111 - Unigene III from Maize Genome Project Zea mays cDNA, mRNA sequence.    46   1e-11  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP005056_24(AP005056|pid:none) Oryza sativa Japonica Group genom...   192   2e-48
BT040193_1(BT040193|pid:none) Zea mays full-length cDNA clone ZM...   192   2e-48
AP002854_15(AP002854|pid:none) Oryza sativa Japonica Group genom...   192   2e-48
BT043367_1(BT043367|pid:none) Zea mays full-length cDNA clone ZM...   192   2e-48
AB071016_1(AB071016|pid:none) Oryza sativa Japonica Group OsRPT5...   192   2e-48
BT034485_1(BT034485|pid:none) Zea mays full-length cDNA clone ZM...   192   2e-48
D17788_1(D17788|pid:none) Oryza sativa Japonica Group mRNA for h...   192   2e-48
(O04019) RecName: Full=26S protease regulatory subunit 6A homolo...   192   3e-48
AF412095_1(AF412095|pid:none) Arabidopsis thaliana At1g09100/F7G...   192   3e-48
(P54776) RecName: Full=26S protease regulatory subunit 6A homolo...   192   4e-48

 psg: 0.50  gvh: 0.37  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SFF811 is cyt

>SFF811Z.Seq
----------CTATTGGTACCANACGTTTCGATAGTNAGGTTAGTGGTGATAGAGAGGTG
CAACGTACAATGTTAGAGTTACTCAATCAATTGGATGGTTTCAGTAGTGATGCAAATATC
AAAGTTATCGCCGCCACCAATCGTATTGATATCTTGGATCCTGCTCTCTTGAGATCTGGT
CGTTTGGATAGAAAGATTGNATTCCCATTACCAAATGAAGAGGCTAGAGCTCATATCCTT
CAAATTCACTCTCGTAAGATGAACGTTTCCGCTGATGTTAATTTCGATGAGTTGGCACGT
TCCTCTGAAGATTTCAATGGCGCTCAATTAAAAGCAGTTTGTGTCGAAGCANGTANATTG
CACTT