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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFF779
Library SF
(Link to library)
Clone ID SFF779
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID SFF779Z
(Link to Original site)
Representative DNA sequence 
>SFF779 (SFF779Q) /CSM/SF/SFF7-D/SFF779Q.Seq.d/
XXXXXXXXXXCCAATGCAACATGTTCATCATTAAATTGTAATGCTCAACAAATGAGTTGC
AAATATGTTCANCAAGCATGTCATGAAACATCATGTTGTCCTGATATTCCTCAATGTCAA
ATTCCTGCAACTGGCGGTGGCCCAGCTACTGGAAGTGCAACTGGTCAAGGCACATCAGGT
GGTACACCAGGTTCTTGTGATAAAGTTAATTGTCCAAATGGTTACATTTGTACAATAGTA
AATCAATTAGCAGTATGTGTTTCTCCATCATCCTCTTCGTCAAGTTCTTCATCAACCACT
GGCTCACATACTACCACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCA
ACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACATACCACAAGTGGT
GGTGGTGGTATGGGTTCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAATGCT
ATACTTGGTCTCTTTGAAGACGATATTTTCTGGGGTGATAATGATGAATACTTTAGTGAT
AACTACCGTTATGTTGATGAAGAAGATATTGATGAAGATTTCAATGGTAATGATGAATTT
GAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGAAGAATATGCATTTTAT
TAAATTAAACTTTTTTTCATAAAAAAATAATAATAATAATTTAATAACTAATCATTATCA
TCAATAATAACATTATAATAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---NATCSSLNCNAQQMSCKYVXQACHETSCCPDIPQCQIPATGGGPATGSATGQGTSGG
TPGSCDKVNCPNGYICTIVNQLAVCVSPSSSSSSSSSTTGSHTTTGGSTTGSHTTTGGST
TGSHTTTGGSTTGSHTTSGGGGMGSFGGRSDEESSDPNAILGLFEDDIFWGDNDEYFSDN
YRYVDEEDIDEDFNGNDEFEIDVEGDFQEDDFEEEYAFY*iklffikk****fnn*slss
iitl*y
Translated Amino Acid sequence (All Frames) 
Frame A:
---qcnmfiikl*cstnelqicsxsms*nimls*yssmsnscnwrwpsywkcnwsrhirw
ytrfl**s*lskwlhlynsksissmcfsiilfvkffinhwltyyhwwfnhwltyyywwfn
hwltyyywwfnhwltyhkwwwwygfiwwsir*rik*skcytwsl*rryflg****il***
lplc**rry**rfqw***i*n*c*r*fprr*frrricilln*tffhkkiiiii**liiii
nnniii


Frame B:
---NATCSSLNCNAQQMSCKYVXQACHETSCCPDIPQCQIPATGGGPATGSATGQGTSGG
TPGSCDKVNCPNGYICTIVNQLAVCVSPSSSSSSSSSTTGSHTTTGGSTTGSHTTTGGST
TGSHTTTGGSTTGSHTTSGGGGMGSFGGRSDEESSDPNAILGLFEDDIFWGDNDEYFSDN
YRYVDEEDIDEDFNGNDEFEIDVEGDFQEDDFEEEYAFY*iklffikk****fnn*slss
iitl*y


Frame C:
---mqhvhh*ivmlnk*vanmfxkhvmkhhvvliflnvkflqlavaqllevqlvkahqvv
hqvlviklivqmvtfvq**in*qyvflhhplrqvlhqplahilplvvqplahilllvvqp
lahilllvvqplahipqvvvvvwvhlvvdpmknqviqmlylvslktifsgvimmntlvit
tvmlmkkilmkismvmmnlklmlkviskkmiskknmhfiklnffs*knnnnnlitnhyhq
**hyn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFF779 (SFF779Q) /CSM/SF/SFF7-D/SFF779Q.Seq.d/                       1302   0.0
SFJ181 (SFJ181Q) /CSM/SF/SFJ1-D/SFJ181Q.Seq.d/                        789   0.0
SFH869 (SFH869Q) /CSM/SF/SFH8-C/SFH869Q.Seq.d/                        789   0.0
SFD793 (SFD793Q) /CSM/SF/SFD7-D/SFD793Q.Seq.d/                        789   0.0
CHD579 (CHD579Q) /CSM/CH/CHD5-D/CHD579Q.Seq.d/                        789   0.0
CHD275 (CHD275Q) /CSM/CH/CHD2-D/CHD275Q.Seq.d/                        789   0.0
CHC435 (CHC435Q) /CSM/CH/CHC4-B/CHC435Q.Seq.d/                        789   0.0
CHB431 (CHB431Q) /CSM/CH/CHB4-B/CHB431Q.Seq.d/                        789   0.0
CHA516 (CHA516Q) /CSM/CH/CHA5-A/CHA516Q.Seq.d/                        789   0.0
CFI766 (CFI766Q) /CSM/CF/CFI7-C/CFI766Q.Seq.d/                        789   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds.   789   0.0    3
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.   773   0.0    5
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    40   1e-07  13
AC136724|AC136724.4 Mus musculus clone RP23-65F24, WORKING DRAFT SEQUENCE, 13 unordered pieces.    28   7e-06  4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   1e-05  10
X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96.    34   1e-05  3
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38   6e-05  14
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   0.013  9
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    50   0.024  6
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence.    50   0.044  1
dna update 2003.12.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...   129   1e-28
B25439(B25439)Beejin protein - slime mold (Dictyostelium discoid...    76   6e-20
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        53   1e-05
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    53   1e-05
CP001574_180(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    40   0.073
DQ059011_2(DQ059011|pid:none) Samia cynthia ricini NADH dehydrog...    39   0.12
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    38   0.28
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    38   0.37
AF350602_1(AF350602|pid:none) Brassia caudata maturase (matK) ge...    37   0.81
(Q1AGV7) RecName: Full=Syndecan 4-A; AltName: Full=Syndecan-4.1;...    36   1.1
protein update 2009. 5.24
PSORT 

 psg: 0.82  gvh: 0.50  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SFF779 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFF779Z
3' end seq. 
>SFF779Z.Seq
----------CCAATGCAACATGTTCATCATTAAATTGTAATGCTCAACAAATGAGTTGC
AAATATGTTCANCAAGCATGTCATGAAACATCATGTTGTCCTGATATTCCTCAATGTCAA
ATTCCTGCAACTGGCGGTGGCCCAGCTACTGGAAGTGCAACTGGTCAAGGCACATCAGGT
GGTACACCAGGTTCTTGTGATAAAGTTAATTGTCCAAATGGTTACATTTGTACAATAGTA
AATCAATTAGCAGTATGTGTTTCTCCATCATCCTCTTCGTCAAGTTCTTCATCAACCACT
GGCTCACATACTACCACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCA
ACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACATACCACAAGTGGT
GGTGGTGGTATGGGTTCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAATGCT
ATACTTGGTCTCTTTGAAGACGATATTTTCTGGGGTGATAATGATGAATACTTTAGTGAT
AACTACCGTTATGTTGATGAAGAAGATATTGATGAAGATTTCAATGGTAATGATGAATTT
GAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGAAGAATATGCATTTTAT
TAAATTAAACTTTTTTTCATAAAAAAATAATAATAATAATTTAATAACTAATCATTATCA
TCAATAATAACATTATAATAT
Length of 3' end seq. 731
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -