>SFF738 (SFF738Q) /CSM/SF/SFF7-B/SFF738Q.Seq.d/
ATGATTCAGGTTTTTATGATGTTGTGGTTGAAAACTTTGCATTCAGTGAGCAGGTATATA
TAAAAAACACAGCGGTTTTATCAACAAAACTGTACAACACTAATGGAGGTGGTGTTGAAG
TAATTGATTTTGCACCAAGATTCAATATGTTCTCTCGTCCATACAGACCATCAATGATTA
TTAGAGTCATTAAGCCATTGGGCCATTGTAGAATTAAGATTAGACTAAGACCAACATTCG
GTTATGGATGGGGTGCACCAGAAAAAACCAGAGGTACAAACCATATAAGATATATATTAC
CATCAATGGTAATGAGACTTACAACCAATGCTCCAATTTCATATATTGTTGATGAAGTTT
TATTTGAAGCTGATGAAACATTATACTTTGTATTTATGGCTGATGAAAGTTTAAGAGAAT
CCCTTCATGATGTTACCAATACTTATTTGGATAAAACAATTGAATATTGGCAAGAATATA
CTAAATCATTAGCTATTCCACTTGAATGGCAATCACAAGTTTTAAGAGCATGTATTACTG
TAAAACTTTGCCAATTTGAAGAATCTGGTGCCATTATTGCATCATTAACAACATCAATCC
XXXXXXXXXXAGCATCTATTCAAATGTTTTTTGATCAAAGATTAAATAAACCAGGTGATA
TTCATTTATTCCATAAATTAGAAGGTTTAGGTATGCAAGCATATACAAATTATAATAAAC
CAGATTGTGGTCCATTAGGTAAAGGTTCAATTGAAGATGGTAAAATTTATACATTTTCAT
CATTTATGTGTTGGACAGGTTGTGATAGATTAGCAAAGATTGCAAAGAGTTTAAAGATTC
CATTACGTGCACATTTCTGGCAAGAATCTGCAAATAAAATCAAGGAAGAAATGATGGAAC
GTTGCTTCAACAAGGAAAAGAATTCATTTGTATCAACTTGGGATGGAGATGATGTTGATC
CTTACCTTTTATTGATTGCAGAATCTGGATTCACTAAAATTGATGATCCAAAATTCATTG
GAACCGTTGAATATTTAGAGAAAAAACTTAGAAGAGGCAAATACATTATTCAATCACCAG
ACAGTGTTAGTGCATCAACTACATTCACTCTCTACTATATTTCTTGTATTGCTAAAATGG
GTAGAAAAGAAGAAGCAAGAGAACTTTTTGAAAATATCCTTAATGATTGCACTCCATTGG
GTTTAATTAGTCAAGATGTTAACCTTGAAACCAAAGAAATTTGGGGTAACTTTCCAAAAA
CAACTTCAAGGTGGTATAATTAATGCGCATTGTTTAAGT

DSGFYDVVVENFAFSEQVYIKNTAVLSTKLYNTNGGGVEVIDFAPRFNMFSRPYRPSMII
RVIKPLGHCRIKIRLRPTFGYGWGAPEKTRGTNHIRYILPSMVMRLTTNAPISYIVDEVL
FEADETLYFVFMADESLRESLHDVTNTYLDKTIEYWQEYTKSLAIPLEWQSQVLRACITV
KLCQFEESGAIIASLTTSI---

---ASIQMFFDQRLNKPGDIHLFHKLEGLGMQAYTNYNKPDCGPLGKGSIEDGKIYTFSS
FMCWTGCDRLAKIAKSLKIPLRAHFWQESANKIKEEMMERCFNKEKNSFVSTWDGDDVDP
YLLLIAESGFTKIDDPKFIGTVEYLEKKLRRGKYIIQSPDSVSASTTFTLYYISCIAKMG
RKEEARELFENILNDCTPLGLISQDVNLETKEIWGNFPKTTSRWYN*calfk

Frame A:
miqvfmmlwlktlhsvsryi*ktqrfyqqncttlmevvlk*lilhqdsicslvhtdhq*l
leslshwaivelrld*dqhsvmdgvhqkkpevqti*diyyhqw**dlqpmlqfhillmkf
ylklmkhytlylwlmkv*enpfmmlpiliwikqlnigknilnh*lfhlngnhkf*ehvll
*nfanlknlvpllhh*qhqs---

---siysnvf*skik*tr*ysfip*irrfryasiykl**trlwsir*rfn*rw*nlyifi
iyvldrl**iskdckefkdsitctflarick*nqgrndgtllqqgkeficinlgwr*c*s
lpfidcriwih*n**skihwnr*ifrekt*krqihysitrqc*cinyihsllyflyc*ng
*krrskrtf*kyp**lhsigfn*src*p*nqrnlg*lsknnfkvv*lmriv*

Frame B:
*frfl*ccg*klciq*agiykkhsgfinktvqh*wrwc*sn*fctkiqyvlssiqtindy
*sh*aigpl*n*d*tktnirlwmgctrknqrykpykiyitingnetynqcsnfiyc**sf
i*s**niilciyg**kfkrips*cyqylfg*nn*ilariy*iisyst*maitsfksmyyc
ktlpi*riwchyciinnin---

---ASIQMFFDQRLNKPGDIHLFHKLEGLGMQAYTNYNKPDCGPLGKGSIEDGKIYTFSS
FMCWTGCDRLAKIAKSLKIPLRAHFWQESANKIKEEMMERCFNKEKNSFVSTWDGDDVDP
YLLLIAESGFTKIDDPKFIGTVEYLEKKLRRGKYIIQSPDSVSASTTFTLYYISCIAKMG
RKEEARELFENILNDCTPLGLISQDVNLETKEIWGNFPKTTSRWYN*calfk

Frame C:
DSGFYDVVVENFAFSEQVYIKNTAVLSTKLYNTNGGGVEVIDFAPRFNMFSRPYRPSMII
RVIKPLGHCRIKIRLRPTFGYGWGAPEKTRGTNHIRYILPSMVMRLTTNAPISYIVDEVL
FEADETLYFVFMADESLRESLHDVTNTYLDKTIEYWQEYTKSLAIPLEWQSQVLRACITV
KLCQFEESGAIIASLTTSI---

---hlfkcflikd*inqvifiysin*kv*vckhiqiiinqivvh*vkvqlkmvkfihfhh
lcvgqvvid*qrlqrv*rfhyvhisgknlqiksrkk*wnvastrkrihlyqlgmemmlil
tfy*lqnldslklmiqnsleplni*rknleeantlfnhqtvlvhqlhslstiflvllkwv
ekkkqenflkislmialhwv*lvkmltlkpkkfgvtfqkqlqggiinahcls

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFF738 (SFF738Q) /CSM/SF/SFF7-B/SFF738Q.Seq.d/                       2516   0.0
SFK608 (SFK608Q) /CSM/SF/SFK6-A/SFK608Q.Seq.d/                       1352   0.0
CHF540 (CHF540Q) /CSM/CH/CHF5-B/CHF540Q.Seq.d/                       1352   0.0
AHM143 (AHM143Q) /CSM/AH/AHM1-B/AHM143Q.Seq.d/                       1352   0.0
AHB503 (AHB503Q) /CSM/AH/AHB5-A/AHB503Q.Seq.d/                       1352   0.0
AFI729 (AFI729Q) /CSM/AF/AFI7-B/AFI729Q.Seq.d/                       1352   0.0
CFF343 (CFF343Q) /CSM/CF/CFF3-B/CFF343Q.Seq.d/                       1350   0.0
AFF466 (AFF466Q) /CSM/AF/AFF4-C/AFF466Q.Seq.d/                       1350   0.0
AHC179 (AHC179Q) /CSM/AH/AHC1-D/AHC179Q.Seq.d/                       1344   0.0
AFE468 (AFE468Q) /CSM/AF/AFE4-C/AFE468Q.Seq.d/                       1344   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.  1199   0.0    13
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             34   0.001  31
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           38   0.004  26
AL139076|AL139076.2 Campylobacter jejuni NCTC11168 complete genome; segment 3/6.    36   0.010  16
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    32   0.025  13
AL049181|AL049181.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P4.    44   0.053  17
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    34   0.091  14
BX004890|BX004890.9 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-9A6.    42   0.093  10
AC094221|AC094221.9 Rattus norvegicus clone CH230-2P14, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34   0.11   11
AC125567|AC125567.5 Rattus norvegicus clone CH230-9H22, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    38   0.13   8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_62(AC116979|pid:none) Dictyostelium discoideum chromoso...   455   e-126
DQ384332_1(DQ384332|pid:none) Physarum polycephalum glycosyl hyd...   288   3e-76
AY923753_1(AY923753|pid:none) Physarum polycephalum glycosyl hyd...   288   3e-76
DQ390347_1(DQ390347|pid:none) Hartmannella vermiformis glycosyl ...   227   6e-58
DQ384328_1(DQ384328|pid:none) Hartmannella vermiformis glycosyl ...   227   6e-58
DQ384329_1(DQ384329|pid:none) Hartmannella vermiformis glycosyl ...   227   6e-58
CP000774_307(CP000774|pid:none) Parvibaculum lavamentivorans DS-...   191   5e-47
AE013598_1578(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K...   185   3e-45
AM039952_3335(AM039952|pid:none) Xanthomonas campestris pv. vesi...   185   3e-45
CP000699_3582(CP000699|pid:none) Sphingomonas wittichii RW1, com...   184   6e-45

 psg: 0.75  gvh: 0.40  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SFF738 is cyt

>SFF738F.Seq
ATGATTCAGGTTTTTATGATGTTGTGGTTGAAAACTTTGCATTCAGTGAGCAGGTATATA
TAAAAAACACAGCGGTTTTATCAACAAAACTGTACAACACTAATGGAGGTGGTGTTGAAG
TAATTGATTTTGCACCAAGATTCAATATGTTCTCTCGTCCATACAGACCATCAATGATTA
TTAGAGTCATTAAGCCATTGGGCCATTGTAGAATTAAGATTAGACTAAGACCAACATTCG
GTTATGGATGGGGTGCACCAGAAAAAACCAGAGGTACAAACCATATAAGATATATATTAC
CATCAATGGTAATGAGACTTACAACCAATGCTCCAATTTCATATATTGTTGATGAAGTTT
TATTTGAAGCTGATGAAACATTATACTTTGTATTTATGGCTGATGAAAGTTTAAGAGAAT
CCCTTCATGATGTTACCAATACTTATTTGGATAAAACAATTGAATATTGGCAAGAATATA
CTAAATCATTAGCTATTCCACTTGAATGGCAATCACAAGTTTTAAGAGCATGTATTACTG
TAAAACTTTGCCAATTTGAAGAATCTGGTGCCATTATTGCATCATTAACAACATCAATCC
----------

>SFF738Z.Seq
----------AGCATCTATTCAAATGTTTTTTGATCAAAGATTAAATAAACCAGGTGATA
TTCATTTATTCCATAAATTAGAAGGTTTAGGTATGCAAGCATATACAAATTATAATAAAC
CAGATTGTGGTCCATTAGGTAAAGGTTCAATTGAAGATGGTAAAATTTATACATTTTCAT
CATTTATGTGTTGGACAGGTTGTGATAGATTAGCAAAGATTGCAAAGAGTTTAAAGATTC
CATTACGTGCACATTTCTGGCAAGAATCTGCAAATAAAATCAAGGAAGAAATGATGGAAC
GTTGCTTCAACAAGGAAAAGAATTCATTTGTATCAACTTGGGATGGAGATGATGTTGATC
CTTACCTTTTATTGATTGCAGAATCTGGATTCACTAAAATTGATGATCCAAAATTCATTG
GAACCGTTGAATATTTAGAGAAAAAACTTAGAAGAGGCAAATACATTATTCAATCACCAG
ACAGTGTTAGTGCATCAACTACATTCACTCTCTACTATATTTCTTGTATTGCTAAAATGG
GTAGAAAAGAAGAAGCAAGAGAACTTTTTGAAAATATCCTTAATGATTGCACTCCATTGG
GTTTAATTAGTCAAGATGTTAACCTTGAAACCAAAGAAATTTGGGGTAACTTTCCAAAAA
CAACTTCAAGGTGGTATAATTAATGCGCATTGTTTAAGT

>SFF738P.Seq
ATGATTCAGGTTTTTATGATGTTGTGGTTGAAAACTTTGCATTCAGTGAGCAGGTATATA
TAAAAAACACAGCGGTTTTATCAACAAAACTGTACAACACTAATGGAGGTGGTGTTGAAG
TAATTGATTTTGCACCAAGATTCAATATGTTCTCTCGTCCATACAGACCATCAATGATTA
TTAGAGTCATTAAGCCATTGGGCCATTGTAGAATTAAGATTAGACTAAGACCAACATTCG
GTTATGGATGGGGTGCACCAGAAAAAACCAGAGGTACAAACCATATAAGATATATATTAC
CATCAATGGTAATGAGACTTACAACCAATGCTCCAATTTCATATATTGTTGATGAAGTTT
TATTTGAAGCTGATGAAACATTATACTTTGTATTTATGGCTGATGAAAGTTTAAGAGAAT
CCCTTCATGATGTTACCAATACTTATTTGGATAAAACAATTGAATATTGGCAAGAATATA
CTAAATCATTAGCTATTCCACTTGAATGGCAATCACAAGTTTTAAGAGCATGTATTACTG
TAAAACTTTGCCAATTTGAAGAATCTGGTGCCATTATTGCATCATTAACAACATCAATCC
----------AGCATCTATTCAAATGTTTTTTGATCAAAGATTAAATAAACCAGGTGATA
TTCATTTATTCCATAAATTAGAAGGTTTAGGTATGCAAGCATATACAAATTATAATAAAC
CAGATTGTGGTCCATTAGGTAAAGGTTCAATTGAAGATGGTAAAATTTATACATTTTCAT
CATTTATGTGTTGGACAGGTTGTGATAGATTAGCAAAGATTGCAAAGAGTTTAAAGATTC
CATTACGTGCACATTTCTGGCAAGAATCTGCAAATAAAATCAAGGAAGAAATGATGGAAC
GTTGCTTCAACAAGGAAAAGAATTCATTTGTATCAACTTGGGATGGAGATGATGTTGATC
CTTACCTTTTATTGATTGCAGAATCTGGATTCACTAAAATTGATGATCCAAAATTCATTG
GAACCGTTGAATATTTAGAGAAAAAACTTAGAAGAGGCAAATACATTATTCAATCACCAG
ACAGTGTTAGTGCATCAACTACATTCACTCTCTACTATATTTCTTGTATTGCTAAAATGG
GTAGAAAAGAAGAAGCAAGAGAACTTTTTGAAAATATCCTTAATGATTGCACTCCATTGG
GTTTAATTAGTCAAGATGTTAACCTTGAAACCAAAGAAATTTGGGGTAACTTTCCAAAAA
CAACTTCAAGGTGGTATAATTAATGCGCATTGTTTAAGT