SFF690 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFF690
Library	SF (Link to library)
Clone ID	SFF690 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16030-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFF6-D/SFF690Q.Seq.d/
Representative seq. ID	SFF690E (Link to Original site)
Representative DNA sequence	>SFF690 (SFF690Q) /CSM/SF/SFF6-D/SFF690Q.Seq.d/ ATTTTCAAAACAACAATTCATATATAATAAATAATGGCAGAAACAAAAGTTGCACCAAAT CTTACTGGTATTGAGCAAACCAAGGCAGGTCAATCCTTCACTGAAAAATTATCAGCTGAA GCTATGGAATTTTTCTGTAATGTTGCCAAATTACCATTCTCACAACAAGCTGTTCACTTT TTGAATGCTTATTGGGCTGAAGTTAGCAAAGAAGCTGAATTCATCTATTCCGTTGGTTGG GAAACAATCAAATATGCTGATATGCATTGCAAAGGTATCCAACTCGTTTTCAAATACGAT GAAGGTAACGATTTGGATTTCGATATTGCTCTCTATTTCTATGAACAATTATGCAAATTC TGTGAAGATCCAAAGAACAAAAACTATGCAACCACCTACCCAATCTCTCAACCACAAATG TTGACTGCTCTCAAACGTAAACAAGAATTAAGAGAAAAAGTCGATGTCAATTTCGATGGT CGTGTCTCTTTCCTCGAATATCTCTTATATCAATACAAAGATTTCGCCAATCCAGCTGAT TTCTGTACTCGTTCAATGAACCNCGATGAACATCCAGAAATCAAAAAAGCTNGTTTAGCT NTCGAANAAGTCAACAAACGTATTNGTGCTTACGAANAANAAAAAGCCCGTTTAACCGAA NAATCAAANATTCCAGGTGTCAAAGGTNTCGGTGCCNCAAACATGCTCGCTCAAATTGAT AGTGGTCCATTAAAGGAACAACTCAACTTTGCCCTTATCTCTGCTGAAGCTGCTGTTCGN ACTGCTTCAAANAAANATGGTGGTGCTGCTTATTCAGGTGGNGCTGGTGATGCTGGNGCT GGTTCCNCTGCTGGNGCCNTTTGGTGGATGAATCGTGATTTANAANAAAANAAAAANAGA TACGGNCCCCAAAANAAATAAATATTCTATTTGCCCGAACAATTTAATTTGTAAAACAGA ATATAAAAATCAAAAAAAAAATTGTAAAAATAAAACCTTAAAAAAAAAAAATAATAATAA ATATATATTTATTAAAACACTTTGGTGTTTTC
sequence update	2001. 6. 9
Translated Amino Acid sequence	ifkttihi*IMAETKVAPNLTGIEQTKAGQSFTEKLSAEAMEFFCNVAKLPFSQQAVHF LNAYWAEVSKEAEFIYSVGWETIKYADMHCKGIQLVFKYDEGNDLDFDIALYFYEQLCKF CEDPKNKNYATTYPISQPQMLTALKRKQELREKVDVNFDGRVSFLEYLLYQYKDFANPAD FCTRSMNXDEHPEIKKAXLAXEXVNKRIXAYEXXKARLTEXSXIPGVKGXGAXNMLAQID SGPLKEQLNFALISAEAAVRTASXKXGGAAYSGGAGDAGAGSXAGAXWWMNRDLXXXKXR YGPQXKifylpeqfnlnrikskkklknlkkkk**iyiyntlvf
Translated Amino Acid sequence (All Frames)	Frame A: ifkttihi*IMAETKVAPNLTGIEQTKAGQSFTEKLSAEAMEFFCNVAKLPFSQQAVHF LNAYWAEVSKEAEFIYSVGWETIKYADMHCKGIQLVFKYDEGNDLDFDIALYFYEQLCKF CEDPKNKNYATTYPISQPQMLTALKRKQELREKVDVNFDGRVSFLEYLLYQYKDFANPAD FCTRSMNXDEHPEIKKAXLAXEXVNKRIXAYEXXKARLTEXSXIPGVKGXGAXNMLAQID SGPLKEQLNFALISAEAAVRTASXKXGGAAYSGGAGDAGAGSXAGAXWWMNRDLXXXKXR YGPQXKifylpeqfnlnrikskkklknlkkkk**iyiyntlvf Frame B: fskqqfiynkwqkqklhqillvlskprqvnpslknyqlklwnfsvmlpnyhshnklftf mliglklakklnssiplvgkqsnmliciakvsnsfsntmkvtiwisillsismnnyans vkiqrtktmqpptqslnhkcllsnvnknekksmsismvvslssnisyintkispiqli svlvqtxmniqkskklvlsxkstnvxvltxxkkpvpxnqxfqvskvsvpqtcslkli vvhrnnstlplsllkllfxllqxxmvvlliqvxlvmlxlvpllxpfggivixxkxkxd txpkxnkysicpnnlickteyknqkkncknktlkkknnnkyifiktlwcf Frame C: fqnnnsyiinngrnksctksywyanqgrsilhkiissygiflccqitilttscslf ecllgsqrsihlfrwlgnnqicyalqryptrfqirrrfgfrycslfltimqil rskeqklcnhlpnlsttnvdcsqttrikrksrcqfrwsclfprislisiqrfrqssf lysfneprtsrnqksxfsxrxsqqtyxclrxxkspfnrxikxsrcqrxrcxkharsn** wsikgttqlcpylcsccsxcfkxxwwcclfrwxwcwxwfxcwxxlvdesfxxkxkxi rxpkxinilfartifvkqnikikkkivkikp*kkkiiiniyllkhfgvf
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFF690 (SFF690Q) /CSM/SF/SFF6-D/SFF690Q.Seq.d/ 1600 0.0 SHK572 (SHK572Q) /CSM/SH/SHK5-C/SHK572Q.Seq.d/ 1580 0.0 SHD143 (SHD143Q) /CSM/SH/SHD1-B/SHD143Q.Seq.d/ 1578 0.0 VFH678 (VFH678Q) /CSM/VF/VFH6-D/VFH678Q.Seq.d/ 1562 0.0 VSI777 (VSI777Q) /CSM/VS/VSI7-D/VSI777Q.Seq.d/ 1560 0.0 VSD421 (VSD421Q) /CSM/VS/VSD4-A/VSD421Q.Seq.d/ 1528 0.0 VHE736 (VHE736Q) /CSM/VH/VHE7-B/VHE736Q.Seq.d/ 1469 0.0 SHI591 (SHI591Q) /CSM/SH/SHI5-D/SHI591Q.Seq.d/ 1183 0.0 VFM761 (VFM761Q) /CSM/VF/VFM7-C/VFM761Q.Seq.d/ 1178 0.0 VHN133 (VHN133Q) /CSM/VH/VHN1-B/VHN133Q.Seq.d/ 1164 0.0
own update	2002.12. 1
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N M58022\|M58022.1 Dictyostelium 30,000 dalton actin bundling protein mRNA, complete cds. 1425 0.0 3 Z50156\|Z50156.1 D.discoideum gene for 34 kD actin binding protein. 1340 0.0 3 U32112\|U32112.1 Dictyostelium discoideum 34 kDa actin binding protein gene, complete cds. 1340 0.0 3 BQ762314\|BQ762314.1 EBro01_SQ005_O08 _R root, 3 week, hydroponic grown, no treatment, cv Optic, EBro01 Hordeum vulgare cDNA clone EBro01_SQ005_O08 5', mRNA sequence. 117 1e-27 3 AC068138\|AC068138.6 Homo sapiens chromosome 2 clone RP11-813K12, complete sequence. 46 2e-08 2 AL034419\|AL034419.22 Human DNA sequence from clone RP5-1108D11 on chromosome 20q12-13.11 Contains part of the gene for a novel protein similar to C. elegans T22C1.7, part of the gene for a novel HMG (high mobility group) box protein similar to KIAA0737, KIAA0808 and TNRC9 (CAGF9), ESTs, STSs, GSSs and two putative CpG islands. 42 1e-05 2 AC021123\|AC021123.4 Homo sapiens chromosome 3 clone RP11-356O23, WORKING DRAFT SEQUENCE, 34 unordered pieces. 40 2e-04 6 AC126475\|AC126475.5 Homo sapiens 3 BAC RP11-356O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 40 2e-04 2 AC093912\|AC093912.2 Homo sapiens BAC clone RP11-766E1 from 2, complete sequence. 38 8e-04 2 AC019132\|AC019132.4 Homo sapiens chromosome 6 clone RP11-575G14, WORKING DRAFT SEQUENCE, 11 unordered pieces. 38 8e-04 2
dna update	2004. 1.25
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (P24005) RecName: Full=Calcium-regulated actin-bundling protein;... 502 e-141 AF397903_1(AF397903\|pid:none) Pisum sativum AAA-metalloprotease ... 36 2.6 AC135467_32(AC135467\|pid:none) Medicago truncatula clone mth2-34... 35 5.8 CP000361_1110(CP000361\|pid:none) Arcobacter butzleri RM4018, com... 34 7.5
protein update	2009. 3. 3
PSORT	psg: 0.83 gvh: 0.52 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: cytoplasmic 20.0 %: nuclear 12.0 %: cytoskeletal 8.0 %: mitochondrial 4.0 %: Golgi 4.0 %: vacuolar 4.0 %: vesicles of secretory system 4.0 %: endoplasmic reticulum >> prediction for SFF690 is cyt
5' end seq. ID	SFF690F
5' end seq.	>SFF690F.Seq ATTTTCAAAACAACAATTCATATATAATAAATAATGGCAGAAACAAAAGTTGCACCAAAT CTTACTGGTATTGAGCAAACCAAGGCAGGTCAATCCTTCACTGAAAAATTATCAGCTGAA GCTATGGAATTTTTCTGTAATGTTGCCAAATTACCATTCTCACAACAAGCTGTTCACTTT TTGAATGCTTATTGGGCTGAAGTTAGCAAAGAAGCTGAATTCATCTATTCCGTTGGTTGG GAAACAATCAAATATGCTGATATGCATTGCAAAGGTATCCAACTCGTTTTCAAATACGAT GAAGGTAACGATTTGGATTTCGATATTGCTCTCTATTTCTATGAACAATTATGCAAATTC TGTGAAGATCCAAAGAACAAAAACTATGCAACCACCTACCCAATCTCTCAACCACAAATG TTGACTGCTCTCAAACGTAAACAAGAATTAAGAGAAAAAGTCGATGTCAATTTCGATGGT CGTGTCTCTTTCCTCGAATATCTCTTATATCAATACAAAGATTTCGCCAATCCAGCTGAT TTCTGTACTCGTTCAATGAACCACGATGAACAT----------
Length of 5' end seq.	573
3' end seq. ID	SFF690Z
3' end seq.	>SFF690Z.Seq ----------CTTTCCTCGAATATNTNTTATATCAATACAAANATTTCGCCAATCCAGCT GATTTNTGNACTCGTTCAATGAACCCCGATGAACATCCAGAAATCAAAAAAGCTNGTTTA GCTNTCGAANAAGTCAACAAACGTATTNGTGCTTACGAANAANAAAAAGCCCGTTTAACC GAANAATCAAANATTCCAGGTGTCAAAGGTNTCGGTGCCNCAAACATGCTCGCTCAAATT GATAGTGGTCCATTAAAGGAACAACTCAACTTTGCCCTTATCTCTGCTGAAGCTGCTGTT CGNACTGCTTCAAANAAANATGGTGGTGCTGCTTATTCAGGTGGNGCTGGTGATGCTGGN GCTGGTTCCNCTGCTGGNGCCNTTTGGTGGATGAATCGTGATTTANAANAAAANAAAAAN AGATACGGNCCCCAAAANAAATAAATATTCTATTTGCCCGAACAATTTAATTTGTAAAAC AGAATATAAAAATCAAAAAAAAAATTGTAAAAATAAAACCTTAAAAAAAAAAAATAATAA TAAATATATATTTATTAAAACACTTTGGTGTTTTC
Length of 3' end seq.	565
Connected seq. ID	SFF690P
Connected seq.	>SFF690P.Seq ATTTTCAAAACAACAATTCATATATAATAAATAATGGCAGAAACAAAAGTTGCACCAAAT CTTACTGGTATTGAGCAAACCAAGGCAGGTCAATCCTTCACTGAAAAATTATCAGCTGAA GCTATGGAATTTTTCTGTAATGTTGCCAAATTACCATTCTCACAACAAGCTGTTCACTTT TTGAATGCTTATTGGGCTGAAGTTAGCAAAGAAGCTGAATTCATCTATTCCGTTGGTTGG GAAACAATCAAATATGCTGATATGCATTGCAAAGGTATCCAACTCGTTTTCAAATACGAT GAAGGTAACGATTTGGATTTCGATATTGCTCTCTATTTCTATGAACAATTATGCAAATTC TGTGAAGATCCAAAGAACAAAAACTATGCAACCACCTACCCAATCTCTCAACCACAAATG TTGACTGCTCTCAAACGTAAACAAGAATTAAGAGAAAAAGTCGATGTCAATTTCGATGGT CGTGTCTCTTTCCTCGAATATCTCTTATATCAATACAAAGATTTCGCCAATCCAGCTGAT TTCTGTACTCGTTCAATGAACCACGATGAACAT----------CTTTCCTCGAATATNTN TTATATCAATACAAANATTTCGCCAATCCAGCTGATTTNTGNACTCGTTCAATGAACCCC GATGAACATCCAGAAATCAAAAAAGCTNGTTTAGCTNTCGAANAAGTCAACAAACGTATT NGTGCTTACGAANAANAAAAAGCCCGTTTAACCGAANAATCAAANATTCCAGGTGTCAAA GGTNTCGGTGCCNCAAACATGCTCGCTCAAATTGATAGTGGTCCATTAAAGGAACAACTC AACTTTGCCCTTATCTCTGCTGAAGCTGCTGTTCGNACTGCTTCAAANAAANATGGTGGT GCTGCTTATTCAGGTGGNGCTGGTGATGCTGGNGCTGGTTCCNCTGCTGGNGCCNTTTGG TGGATGAATCGTGATTTANAANAAAANAAAAANAGATACGGNCCCCAAAANAAATAAATA TTCTATTTGCCCGAACAATTTAATTTGTAAAACAGAATATAAAAATCAAAAAAAAAATTG TAAAAATAAAACCTTAAAAAAAAAAAATAATAATAAATATATATTTATTAAAACACTTTG GTGTTTTC
Length of connected seq.	1138
Full length Seq ID	SFF690E
Full length Seq.	>SFF690E.Seq ATTTTCAAAACAACAATTCATATATAATAAATAATGGCAGAAACAAAAGTTGCACCAAAT CTTACTGGTATTGAGCAAACCAAGGCAGGTCAATCCTTCACTGAAAAATTATCAGCTGAA GCTATGGAATTTTTCTGTAATGTTGCCAAATTACCATTCTCACAACAAGCTGTTCACTTT TTGAATGCTTATTGGGCTGAAGTTAGCAAAGAAGCTGAATTCATCTATTCCGTTGGTTGG GAAACAATCAAATATGCTGATATGCATTGCAAAGGTATCCAACTCGTTTTCAAATACGAT GAAGGTAACGATTTGGATTTCGATATTGCTCTCTATTTCTATGAACAATTATGCAAATTC TGTGAAGATCCAAAGAACAAAAACTATGCAACCACCTACCCAATCTCTCAACCACAAATG TTGACTGCTCTCAAACGTAAACAAGAATTAAGAGAAAAAGTCGATGTCAATTTCGATGGT CGTGTCTCTTTCCTCGAATATCTCTTATATCAATACAAAGATTTCGCCAATCCAGCTGAT TTCTGTACTCGTTCAATGAACCNCGATGAACATCCAGAAATCAAAAAAGCTNGTTTAGCT NTCGAANAAGTCAACAAACGTATTNGTGCTTACGAANAANAAAAAGCCCGTTTAACCGAA NAATCAAANATTCCAGGTGTCAAAGGTNTCGGTGCCNCAAACATGCTCGCTCAAATTGAT AGTGGTCCATTAAAGGAACAACTCAACTTTGCCCTTATCTCTGCTGAAGCTGCTGTTCGN ACTGCTTCAAANAAANATGGTGGTGCTGCTTATTCAGGTGGNGCTGGTGATGCTGGNGCT GGTTCCNCTGCTGGNGCCNTTTGGTGGATGAATCGTGATTTANAANAAAANAAAAANAGA TACGGNCCCCAAAANAAATAAATATTCTATTTGCCCGAACAATTTAATTTGTAAAACAGA ATATAAAAATCAAAAAAAAAATTGTAAAAATAAAACCTTAAAAAAAAAAAATAATAATAA ATATATATTTATTAAAACACTTTGGTGTTTTC
Length of full length seq.	1052

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas