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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFF660
Library SF
(Link to library)
Clone ID SFF660
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16450-1
Original site URL
Representative seq. ID SFF660E
(Link to Original site)
Representative DNA sequence 
>SFF660 (SFF660Q) /CSM/SF/SFF6-C/SFF660Q.Seq.d/
TTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCATTTATGAAAT
GTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACTATAGATTTT
ATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAACCATACCCAA
CTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTACCAATCTTT
ATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCCCACAATGGC
CAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACCTTTCTCCAA
AAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAAATTCAATCC
ATTCAAGCCCATTTGGAAACTGTACAAAATATTATGAAAATACAAATAATGCAACATGTA
CTGCATGTTTTGATTTACCAATGGATATTTCTCCAGGTTTATATATTCTTCAATTTTTCT
GGGAGTTTAATCCAAAGGAATATTATTTAACATGTGCTGATATAATGATTTCCAGTGGAG
GTGCATATCATTACCATGAACCACAAAGACCATCTCGAGAAGAATACCCACAAAGACCAT
CTCGTGAAGAACTTCAAAGAGAAGAAAGACAAAGAGATCAAGAAGAACAAGCCATAAGAA
GAAAGAGACAAAATGATGAGTATCTTGAATTGCAAAGAGAAAAAGAAAGAGAACAAATGC
AACGTGATATAGAGAGAAAGCTGCAGCAGAAGAGTCCAGAAAACATAAATCAACCATTTT
CCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCAAGTGCAAGTTGGGGTCC
ATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATACTTGGAAATGTTTTATT
CTTTAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGCAAAAGAGCCCTCAACAT
CAACATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTTAACCTCTTAACCAAAGG
TGAAAAAATTCCACTCTCAATTTCATTAGAACCATACATTGATTCATCATTTATTGATGA
TGGTGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTCTATAGAAATGAATTCTA
TGCTATTACTCTATNCGGTTATGANATTCAAATAGNATATTATTAGAGTTCANTCAATTT
CAC
sequence update 2001. 6. 9
Translated Amino Acid sequence 
LTVLLVLLFGKIESHSFMKCVDWDFGSNSCAAYPRNYRFYEQQGDGFLFQRGKFTKPYPT
ELGQSCGPAQRRSSSITNLYSSKHPMGNFQAGQKICPQWPARNHATALRAGTVSFYLSPK
MTSDAPADPSQDVFFQNSIHSSPFGNCTKYYENTNNATCTACFDLPMDISPGLYILQFFW
EFNPKEYYLTCADIMISSGGAYHYHEPQRPSREEYPQRPSREELQREERQRDQEEQAIRR
KRQNDEYLELQREKEREQMQRDIERKLQQKSPENINQPFSNIL*emvnwkensqvqvgvh
iqrrrlnimkldqylemfyslnvqldpivyqvkakepststf*vlkksfqilklts*pkv
kkfhsqfh*nhtlihhllmmvihtiqlafhfkdsiemnsmlllyxvmxfk*xiirvxsis
Translated Amino Acid sequence (All Frames) 
Frame A:
f*qyylyyylvklnhihl*nvwigilvqihvqhtqetidfmnnkamvsyskevnsqnhtq
lnwvnhvaqhkeevlqlpifivqniqweisklvkrfahngqqetmrlh*elvplvstflq
k*hqmlpqiqvkmysskiqsiqahletvqnimkiqimqhvlhvliyqwiflqvyiffnfs
gsliqrnii*hvli**fpvevhiitmnhkdhleknthkdhlvknfkekkdkeikknkp*e
erdkmmsilnckekkkenkcnvi*rescsrrvqkt*inhfpiyyerw*igkrilkcklgs
ifkegg*il*n*tntwkcfil*mcnwiqlfik*rqkspqhqhfrf*rnhfkyss*plnqr
*knstlnfirtih*fiiy**w*fiqyn*rstskil*k*ilcyysxrl*xsnxillefxqf
h


Frame B:
fnsttciiiw*n*itfiyemcglgfwfkfmcsipkkl*il*ttrrwflipkr*ihktipn
*igsimwpstkkkffnyqsl*fktsngkfpswskdlptmaskkpcdcikswyr*flpfsk
ndircsrrsksrcilpkfnpfkpiwklykil*kyk*cnmycmf*ftngyfsrfiyssifl
gv*skgilfnmc*yndfqwrcislp*ttktisrriptktis*rtskrrktkrsrrtshkk
ketk**vs*iakrkrkrtnat*yrekaaaeesrkhkstifqyimrdgklerefssaswgp
yskkeveyyetrpilgnvlffkcatgsnclsskgkralninilgfkeiisntqvnlltkg
ekiplsislepyidssfiddgdsyntisvplqrfyrnefyaitlxgyxiqixyy*ssxnf


Frame C:
LTVLLVLLFGKIESHSFMKCVDWDFGSNSCAAYPRNYRFYEQQGDGFLFQRGKFTKPYPT
ELGQSCGPAQRRSSSITNLYSSKHPMGNFQAGQKICPQWPARNHATALRAGTVSFYLSPK
MTSDAPADPSQDVFFQNSIHSSPFGNCTKYYENTNNATCTACFDLPMDISPGLYILQFFW
EFNPKEYYLTCADIMISSGGAYHYHEPQRPSREEYPQRPSREELQREERQRDQEEQAIRR
KRQNDEYLELQREKEREQMQRDIERKLQQKSPENINQPFSNIL*emvnwkensqvqvgvh
iqrrrlnimkldqylemfyslnvqldpivyqvkakepststf*vlkksfqilklts*pkv
kkfhsqfh*nhtlihhllmmvihtiqlafhfkdsiemnsmlllyxvmxfk*xiirvxsis
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH429 (SFH429Q) /CSM/SF/SFH4-B/SFH429Q.Seq.d/                       1336   0.0
SFG847 (SFG847Q) /CSM/SF/SFG8-B/SFG847Q.Seq.d/                       1336   0.0
SFF660 (SFF660Q) /CSM/SF/SFF6-C/SFF660Q.Seq.d/                       1336   0.0
CFJ451 (CFJ451Q) /CSM/CF/CFJ4-C/CFJ451Q.Seq.d/                       1336   0.0
CFJ290 (CFJ290Q) /CSM/CF/CFJ2-D/CFJ290Q.Seq.d/                       1336   0.0
CFJ214 (CFJ214Q) /CSM/CF/CFJ2-A/CFJ214Q.Seq.d/                       1336   0.0
CFI518 (CFI518Q) /CSM/CF/CFI5-A/CFI518Q.Seq.d/                       1336   0.0
CFH241 (CFH241Q) /CSM/CF/CFH2-B/CFH241Q.Seq.d/                       1336   0.0
CFG445 (CFG445Q) /CSM/CF/CFG4-B/CFG445Q.Seq.d/                       1336   0.0
CFF866 (CFF866Q) /CSM/CF/CFF8-C/CFF866Q.Seq.d/                       1336   0.0
own update 2001.12. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           40   0.004  25
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   0.006  16
AC106527|AC106527.4 Rattus norvegicus clone CH230-26E17, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36   0.012  8
AC131557|AC131557.4 Rattus norvegicus clone CH230-8O19, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    34   0.013  10
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence.    36   0.028  14
AL360354|AL360354.1 Plasmodium vivax telomeric YAC clone, complete finished sequence.    36   0.029  9
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    30   0.029  14
AC140987|AC140987.4 Rattus norvegicus clone CH230-237F12, WORKING DRAFT SEQUENCE, 30 unordered pieces.    36   0.037  11
AC112596|AC112596.4 Rattus norvegicus clone CH230-45P12, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    36   0.056  10
AC068366|AC068366.2 Homo sapiens chromosome 4 clone RP11-234O6 map 4, WORKING DRAFT SEQUENCE, 13 unordered pieces.    36   0.074  7
dna update 2004. 1.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X77919_1(X77919|pid:none) C.burnetti Nine Mile RSA493 phase I ge...    38   0.88
CP001020_1310(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co...    38   0.88
CP001019_562(CP001019|pid:none) Coxiella burnetii CbuG_Q212, com...    38   0.88
AF124332_1(AF124332|pid:none) Danio rerio double-stranded RNA-sp...    37   1.5
CP001451_32(CP001451|pid:none) Borrelia burgdorferi WI91-23 plas...    37   2.0
BC095969_1(BC095969|pid:none) Mus musculus signal-induced prolif...    36   2.6
AY808643_1(AY808643|pid:none) Schistosoma japonicum SJCHGC03558 ...    36   2.6
AK044193_1(AK044193|pid:none) Mus musculus 10 days neonate corte...    36   2.6
FN314387_1(FN314387|pid:none) Schistosoma japonicum isolate Anhu...    36   2.6
protein update 2009. 7. 3
PSORT 

 psg: 0.67  gvh: 0.69  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.10  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SFF660 is cyt
5' end seq. ID SFF660F
5' end seq. 
>SFF660F.Seq
TTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCATTTATGAAAT
GTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACTATAGATTTT
ATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAACCATACCCAA
CTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTACCAATCTTT
ATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCCCACAATGGC
CAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACCTTTCTCCAA
AAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAAATTCAATCC
ATTCAAGCCCATTTGGAAACTGTACAAAATATTATGAAAATACAAATAATGCAACATGTA
CTGCATGTTTTGATTTACCAATGGATATTTCTCCAGGTTTATATATTCTTCAATTTTTCT
GGGAGTTTAATCCAAAGGAATATTATTTAACATGTGCTGATATAATGATTTCCAGTGGAG
GTGCATATCATTACCATGAACCACAA----------
Length of 5' end seq. 626
3' end seq. ID SFF660Z
3' end seq. 
>SFF660Z.Seq
----------TGGGAGTTTAATCCAAAGGAATATTATTTAACATGTGCTGATATAATGAT
TTCCAGTGGAGGTGCATATCATTACCATGAACCACAAAGACCATCTCGAGAAGAATACCC
ACAAAGACCATCTCGTGAAGAACTTCAAAGAGAAGAAAGACAAAGAGATCAAGAAGAACA
AGCCATAAGAAGAAAGAGACAAAATGATGAGTATCTTGAATTGCAAAGAGAAAAAGAAAG
AGAACAAATGCAACGTGATATAGAGAGAAAGCTGCAGCAGAAGAGTCCAGAAAACATAAA
TCAACCATTTTCCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCAAGTGCA
AGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATACTTGGA
AATGTTTTATTCTTTAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGCAAAAGA
GCCCTCAACATCAACATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTTAACCTC
TTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTAGAACCATACATTGATTCATCA
TTTATTGATGATGGTGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTCTATAGA
AATGAATTCTATGCTATTACTCTATNCGGTTATGANATTCAAATAGNATATTATTAGAGT
TCANTCAATTTCAC
Length of 3' end seq. 724
Connected seq. ID SFF660P
Connected seq. 
>SFF660P.Seq
TTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCATTTATGAAAT
GTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACTATAGATTTT
ATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAACCATACCCAA
CTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTACCAATCTTT
ATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCCCACAATGGC
CAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACCTTTCTCCAA
AAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAAATTCAATCC
ATTCAAGCCCATTTGGAAACTGTACAAAATATTATGAAAATACAAATAATGCAACATGTA
CTGCATGTTTTGATTTACCAATGGATATTTCTCCAGGTTTATATATTCTTCAATTTTTCT
GGGAGTTTAATCCAAAGGAATATTATTTAACATGTGCTGATATAATGATTTCCAGTGGAG
GTGCATATCATTACCATGAACCACAA----------TGGGAGTTTAATCCAAAGGAATAT
TATTTAACATGTGCTGATATAATGATTTCCAGTGGAGGTGCATATCATTACCATGAACCA
CAAAGACCATCTCGAGAAGAATACCCACAAAGACCATCTCGTGAAGAACTTCAAAGAGAA
GAAAGACAAAGAGATCAAGAAGAACAAGCCATAAGAAGAAAGAGACAAAATGATGAGTAT
CTTGAATTGCAAAGAGAAAAAGAAAGAGAACAAATGCAACGTGATATAGAGAGAAAGCTG
CAGCAGAAGAGTCCAGAAAACATAAATCAACCATTTTCCAATATATTATGAGAGATGGTA
AATTGGAAAGAGAATTCTCAAGTGCAAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAAT
ATTATGAAACTAGACCAATACTTGGAAATGTTTTATTCTTTAAATGTGCAACTGGATCCA
ATTGTTTATCAAGTAAAGGCAAAAGAGCCCTCAACATCAACATTTTAGGTTTTAAAGAAA
TCATTTCAAATACTCAAGTTAACCTCTTAACCAAAGGTGAAAAAATTCCACTCTCAATTT
CATTAGAACCATACATTGATTCATCATTTATTGATGATGGTGATTCATACAATACAATTA
GCGTTCCACTTCAAAGATTCTATAGAAATGAATTCTATGCTATTACTCTATNCGGTTATG
ANATTCAAATAGNATATTATTAGAGTTCANTCAATTTCAC
Length of connected seq. 1350
Full length Seq ID SFF660E
Full length Seq. 
>SFF660E.Seq
TTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCATTTATGAAAT
GTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACTATAGATTTT
ATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAACCATACCCAA
CTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTACCAATCTTT
ATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCCCACAATGGC
CAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACCTTTCTCCAA
AAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAAATTCAATCC
ATTCAAGCCCATTTGGAAACTGTACAAAATATTATGAAAATACAAATAATGCAACATGTA
CTGCATGTTTTGATTTACCAATGGATATTTCTCCAGGTTTATATATTCTTCAATTTTTCT
GGGAGTTTAATCCAAAGGAATATTATTTAACATGTGCTGATATAATGATTTCCAGTGGAG
GTGCATATCATTACCATGAACCACAAAGACCATCTCGAGAAGAATACCCACAAAGACCAT
CTCGTGAAGAACTTCAAAGAGAAGAAAGACAAAGAGATCAAGAAGAACAAGCCATAAGAA
GAAAGAGACAAAATGATGAGTATCTTGAATTGCAAAGAGAAAAAGAAAGAGAACAAATGC
AACGTGATATAGAGAGAAAGCTGCAGCAGAAGAGTCCAGAAAACATAAATCAACCATTTT
CCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCAAGTGCAAGTTGGGGTCC
ATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATACTTGGAAATGTTTTATT
CTTTAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGCAAAAGAGCCCTCAACAT
CAACATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTTAACCTCTTAACCAAAGG
TGAAAAAATTCCACTCTCAATTTCATTAGAACCATACATTGATTCATCATTTATTGATGA
TGGTGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTCTATAGAAATGAATTCTA
TGCTATTACTCTATNCGGTTATGANATTCAAATAGNATATTATTAGAGTTCANTCAATTT
CAC
Length of full length seq. 1263