SFF588
Library SF
(Link to library)
Clone ID SFF588
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16126-1
Original site URL
Representative seq. ID SFF588F
(Link to Original site)
Representative DNA sequence
>SFF588 (SFF588Q) /CSM/SF/SFF5-D/SFF588Q.Seq.d/
ATATATATATTTATCAATATTAATAATTAATATAATAAAATCAAAAAATCAAGAAATAAT
TTAAAAAAAATAAATAAATAAATAATTTCAAATTGTACATATAAAAAAAAAAXXXXXXXX
XX
sequence update 2001. 6. 1
Translated Amino Acid sequence
YIYLSILIINIIKSKNQEII*kk*ink*fqivhikk---


Translated Amino Acid sequence (All Frames)
Frame A:
iyifininn*ynkikksrnnlkkink*iisnctykkk---


Frame B:
YIYLSILIINIIKSKNQEII*kk*ink*fqivhikk---


Frame C:
iyiyqy**li**nqkikk*fkknk*innfklyi*kk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC822 (SSC822Q) /CSM/SS/SSC8-A/SSC822Q.Seq.d/ 32 1.7
SFF588 (SFF588Q) /CSM/SF/SFF5-D/SFF588Q.Seq.d/ 32 1.7

own update 2001. 6.14
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 177,690
Number of Sequences: 30679270
Number of extensions: 177690
Number of successful extensions: 46843
Number of sequences better than 10.0: 0
length of query: 122
length of database: T,251,742,201
effective HSP length: 21
effective length of query: 101
effective length of database: S,607,477,531
effective search space: 3596355230631
effective search space used: 3596355230631
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2003.12.25
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 36,700,923
protein update 2009. 5.24
PSORT -
5' end seq. ID SFF588F
5' end seq.
>SFF588F.Seq
ATATATATATTTATCAATATTAATAATTAATATAATAAAATCAAAAAATCAAGAAATAAT
TTAAAAAAAATAAATAAATAAATAATTTCAAATTGTACATATAAAAAAAAAA--------
--
Length of 5' end seq. 112
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -