SFF569
Library SF
(Link to library)
Clone ID SFF569
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16465-1
Original site URL
Representative seq. ID SFF569Z
(Link to Original site)
Representative DNA sequence
>SFF569 (SFF569Q) /CSM/SF/SFF5-C/SFF569Q.Seq.d/
XXXXXXXXXXTTTGATCAAAGAAAAGAAACCAANCATTATCATTGGTACCCCAGGTCGTA
TTTTACAATTAGCATCTGAAGGTGCACTCTCACTCAAAGAGATTAAACAATTCATTCTTG
ATGAATGTGATACCATGCTCGAATCATTGGATATGAGAAAGGATGTACAAAAGATCTTCA
AACTCATCCCAGCCAACAAACAAGTTATGATGTTTTCAGCTACCCTCTCTGATACCATTC
GTCCAATCTGTAAGAAGTTTATGAACAATCCATTGGAAATCTACATCAATGATGGTAGTA
AACTCACTCTCCATGGTCTTCAACAATACTACGTACCAATCACTGAAGAACAAAAGAATA
AAAAACTCATTGAACTCTTGGATTCATTAGACTTTAATCAAGCCGTTATTTTCGTCAAAT
CTGTTAGACGTGCTGATGCCTTAAATAAGATCCTCCAAGATATTGGTTTCCCATCCATCT
GTATTCATCGTGACCTCGATCAAAAGGATCGTATCGAACAATACCGTAAATTCAAAAACT
TTGAATCTCGTATCATGGTTGCCACTAATATCTTTGGTCGTGGTATCGATATTGAACGTG
TCAATGTCGTCATCAACTACGATATGGCTGAATCTG
sequence update 2001. 6. 1
Translated Amino Acid sequence
---LIKEKKPXIIIGTPGRILQLASEGALSLKEIKQFILDECDTMLESLDMRKDVQKIFK
LIPANKQVMMFSATLSDTIRPICKKFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQKNK
KLIELLDSLDFNQAVIFVKSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNF
ESRIMVATNIFGRGIDIERVNVVINYDMAES


Translated Amino Acid sequence (All Frames)
Frame A:
---LIKEKKPXIIIGTPGRILQLASEGALSLKEIKQFILDECDTMLESLDMRKDVQKIFK
LIPANKQVMMFSATLSDTIRPICKKFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQKNK
KLIELLDSLDFNQAVIFVKSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNF
ESRIMVATNIFGRGIDIERVNVVINYDMAES


Frame B:
---*skkrnqxlslvpqvvfyn*hlkvhshskrlnnsflmnvipcsnhwi*ermykrssn
ssqptnkl*cfqlpslipfvqsvrsl*tihwkstsmmvvnslsmvfnnttyqslknkrik
nslnswih*tlikplfssnlldvlmp*irsskilvshpsvfivtsikrivsnntvnsktl
nlvswlplislvvvsilnvsmsssttiwlnl


Frame C:
---dqrketxhyhwyprsyftisi*rctltqrd*tihs**m*yhariigyekgctkdlqt
hpsqqtsydvfsypl*yhssnl*evyeqsignlhq*w**thspwsstilrtnh*rtke*k
th*tlgfirl*ssryfrqic*tc*clk*dpprywfpihlyss*prskgsyrtip*iqkl*
isyhgch*ylwswyry*tcqcrhqlryg*i


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFE359 (VFE359Q) /CSM/VF/VFE3-C/VFE359Q.Seq.d/ 1235 0.0
SFF569 (SFF569Q) /CSM/SF/SFF5-C/SFF569Q.Seq.d/ 1235 0.0
FC-AI06 (FC-AI06Q) /CSM/FC/FC-AI/FC-AI06Q.Seq.d/ 1235 0.0
AFL501 (AFL501Q) /CSM/AF/AFL5-A/AFL501Q.Seq.d/ 1229 0.0
AFJ724 (AFJ724Q) /CSM/AF/AFJ7-A/AFJ724Q.Seq.d/ 1219 0.0
AFM640 (AFM640Q) /CSM/AF/AFM6-B/AFM640Q.Seq.d/ 1154 0.0
AFD666 (AFD666Q) /CSM/AF/AFD6-C/AFD666Q.Seq.d/ 1152 0.0
VFD348 (VFD348Q) /CSM/VF/VFD3-B/VFD348Q.Seq.d/ 1148 0.0
SFG247 (SFG247Q) /CSM/SF/SFG2-B/SFG247Q.Seq.d/ 1148 0.0
AFO440 (AFO440Q) /CSM/AF/AFO4-B/AFO440Q.Seq.d/ 1148 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AW759959|AW759959.1 sl56c07.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-5317 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence. 56 9e-10 2
BF071471|BF071471.1 st59b09.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-857 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence. 56 9e-10 2
AL408654|AL408654.1 T7 end of clone AV0AA009H09 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 38 2e-09 4
AX488925|AX488925.1 Sequence 6225 from Patent WO02053728. 40 3e-09 5
CA251168|CA251168.1 SCQSFL1122D07.g FL1 Saccharum officinarum cDNA clone SCQSFL1122D07 5', mRNA sequence. 48 1e-08 3
BI974435|BI974435.1 saj01e10.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-9068 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence. 52 1e-08 2
CA169742|CA169742.1 SCQGSB1066A04.g SB1 Saccharum officinarum cDNA clone SCQGSB1066A04 5', mRNA sequence. 48 1e-08 3
CA201831|CA201831.1 SCRLFL1008H03.g FL1 Saccharum officinarum cDNA clone SCRLFL1008H03 5', mRNA sequence. 48 1e-08 3
CA252463|CA252463.1 SCVPFL1138E12.g FL1 Saccharum officinarum cDNA clone SCVPFL1138E12 5', mRNA sequence. 48 2e-08 3
BI742220|BI742220.1 kt91h02.y1 Strongyloides ratti L3 adult pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:HE47_CAEEL Q18212 PROBABLE ATP-DEPENDENT RNA HELICASE P47 HOMOLOG. [1] ;, mRNA sequence. 38 2e-07 4
dna update 2003.12.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ010466_1(AJ010466|pid:none) Arabidopsis thaliana mRNA for DEAD... 268 7e-71
GM694469_1(GM694469|pid:none) Sequence 25 from Patent EP1953235. 267 2e-70
GM694505_1(GM694505|pid:none) Sequence 61 from Patent EP1953235.... 266 4e-70
BT068295_1(BT068295|pid:none) Zea mays full-length cDNA clone ZM... 266 5e-70
(Q56XG6) RecName: Full=DEAD-box ATP-dependent RNA helicase 15; ... 265 8e-70
EU963228_1(EU963228|pid:none) Zea mays clone 259532 spliceosome ... 265 8e-70
AL360314_6(AL360314|pid:none) Arabidopsis thaliana DNA chromosom... 265 8e-70
AJ428513_1(AJ428513|pid:none) Chironomus tentans mRNA for HEL pr... 264 2e-69
(A1DL85) RecName: Full=ATP-dependent RNA helicase sub2; ... 264 2e-69
(O13792) RecName: Full=ATP-dependent RNA helicase uap56; ... 263 2e-69
protein update 2009. 5.24
PSORT

psg: 0.88 gvh: 0.46 alm: 0.40 top: 0.33 tms: 0.00 mit: 0.19 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: vesicles of secretory system
8.0 %: endoplasmic reticulum

>> prediction for SFF569 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFF569Z
3' end seq.
>SFF569Z.Seq
----------TTTGATCAAAGAAAAGAAACCAANCATTATCATTGGTACCCCAGGTCGTA
TTTTACAATTAGCATCTGAAGGTGCACTCTCACTCAAAGAGATTAAACAATTCATTCTTG
ATGAATGTGATACCATGCTCGAATCATTGGATATGAGAAAGGATGTACAAAAGATCTTCA
AACTCATCCCAGCCAACAAACAAGTTATGATGTTTTCAGCTACCCTCTCTGATACCATTC
GTCCAATCTGTAAGAAGTTTATGAACAATCCATTGGAAATCTACATCAATGATGGTAGTA
AACTCACTCTCCATGGTCTTCAACAATACTACGTACCAATCACTGAAGAACAAAAGAATA
AAAAACTCATTGAACTCTTGGATTCATTAGACTTTAATCAAGCCGTTATTTTCGTCAAAT
CTGTTAGACGTGCTGATGCCTTAAATAAGATCCTCCAAGATATTGGTTTCCCATCCATCT
GTATTCATCGTGACCTCGATCAAAAGGATCGTATCGAACAATACCGTAAATTCAAAAACT
TTGAATCTCGTATCATGGTTGCCACTAATATCTTTGGTCGTGGTATCGATATTGAACGTG
TCAATGTCGTCATCAACTACGATATGGCTGAATCTG
Length of 3' end seq. 626
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -