AFI263
Library AF
(Link to library)
Clone ID AFI263
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U00406-1
Original site URL
Representative seq. ID AFI263P
(Link to Original site)
Representative DNA sequence
>AFI263 (AFI263Q) /CSM/AF/AFI2-C/AFI263Q.Seq.d/
CACTGTTGGCCTACTGGATTTTTTATTTTGTATTTGATCGTTGTTGTATTATCTCATTCC
TTTTATGTATTAATTATATATAAATATATATTAAAAAACACACACAATATATATTTTTTT
TTTTTCGCATNGAAAAAAAAAAXXXXXXXXXXTTAGAATATGTTGAAGTTTCTTTTTATC
AAGTAGCAAGATCTTTAACAATTTGTTTTTCACTCATTTTAACATATATTGTACTCAAAA
GTAAGACATCATATAGAGCAACAATGGCATGTTTAGTAGTATTCCTTGGATTTGTTTTAG
GTAGTGCAGGTGAGGTTAATTTTTCATGGTTAGGTATTATCTTTGGTTTATTATCAAGTT
TTTTCGTTGCTTTATATTCAATTGCAGTTAAAAGAGTGTTACCAGCTGTTGATGGTAATG
AATGGAGATTATCAATTTATAATACAGCAATTTCAATTGGTTTAATCTTCCCATTAATTT
TAGTATCAGGTGAAGCCAATACAATTTTAGATGAACCATTATTATATTCAGGTACATTTT
GGTTCTATATGACAGTTGCAGGTTTAATGGGTTATTTGATTAGTATCTCTGTTTTCATGC
AAATTAAACATACAAGTCCATTAACAAATACCATTTCAGGTACTGTTAAGGCTTGTGTAC
AAACTATTTTAGCAGTTGTTTTTTGGGGTAATCCAATTTCAACTCAAAATGCTGTTGGTA
TTTTATTAGTAATCGGTGGTAGTTTTTGGTATTCAATGCAAAGATTCTTTGAAATGAAAA
AATAATTTTTATAAAATTAATATAATATAAATAAATNTAGAAATAAAT
sequence update 2001. 6. 2
Translated Amino Acid sequence
HCWPTGFFILYLIVVVLSHSFYVLIIYKYILKNTHNIYFFFFAXKKK---

---LEYVEVSFYQVARSLTICFSLILTYIVLKSKTSYRATMACLVVFLGFVLGSAGEVNF
SWLGIIFGLLSSFFVALYSIAVKRVLPAVDGNEWRLSIYNTAISIGLIFPLILVSGEANT
ILDEPLLYSGTFWFYMTVAGLMGYLISISVFMQIKHTSPLTNTISGTVKACVQTILAVVF
WGNPISTQNAVGILLVIGGSFWYSMQRFFEMKK*fl*n*yninkxrnk


Translated Amino Acid sequence (All Frames)
Frame A:
HCWPTGFFILYLIVVVLSHSFYVLIIYKYILKNTHNIYFFFFAXKKK---

---LEYVEVSFYQVARSLTICFSLILTYIVLKSKTSYRATMACLVVFLGFVLGSAGEVNF
SWLGIIFGLLSSFFVALYSIAVKRVLPAVDGNEWRLSIYNTAISIGLIFPLILVSGEANT
ILDEPLLYSGTFWFYMTVAGLMGYLISISVFMQIKHTSPLTNTISGTVKACVQTILAVVF
WGNPISTQNAVGILLVIGGSFWYSMQRFFEMKK*fl*n*yninkxrnk

Frame B:
tvglldflfci*sllyylipfmy*lyiniy*kthtiyifffshxkkk---

---*nmlkflfik*qdl*qfvfhsf*hilyskvrhhieqqwhv**ysldlf*vvqvrlif
hg*vlslvyyqvfsllyiqlqlkecyqllmvmngdyqfiiqqfqlv*ssh*f*yqvkpiq
f*mnhyyiqvhfgsi*qlqv*wvi*lvslfscklniqvh*qipfqvllrlvyklf*qlff
gviqfqlkmllvfy**svvvfgiqckdslk*knnfykinii*inxein

Frame C:
llaywifyfvfdrcciisfllcinyi*iyikkhtqyiffffrxekk---

---ric*sfflssskifnnlffthfniyctqk*dii*snngmfssipwicfr*cr*g*ff
mvryylwfiikffrcfifncs*ksvtsc*w**meiinl*ysnfnwfnlpinfsir*sqyn
fr*tiiifryilvlydscrfnglfd*ylcfhan*tyksinkyhfryc*glctnyfsscfl
g*snfnskccwyfisnrw*flvfnakil*nekiifikli*yk*x*k*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFI263 (AFI263Q) /CSM/AF/AFI2-C/AFI263Q.Seq.d/ 1225 0.0
AFJ595 (AFJ595Q) /CSM/AF/AFJ5-D/AFJ595Q.Seq.d/ 1219 0.0
SSE503 (SSE503Q) /CSM/SS/SSE5-A/SSE503Q.Seq.d/ 502 e-141
VFB702 (VFB702Q) /CSM/VF/VFB7-A/VFB702Q.Seq.d/ 58 2e-07
SFG245 (SFG245Q) /CSM/SF/SFG2-B/SFG245Q.Seq.d/ 52 1e-05
VFC225 (VFC225Q) /CSM/VF/VFC2-B/VFC225Q.Seq.d/ 50 5e-05
CHB586 (CHB586Q) /CSM/CH/CHB5-D/CHB586Q.Seq.d/ 50 5e-05
AHJ160 (AHJ160Q) /CSM/AH/AHJ1-C/AHJ160Q.Seq.d/ 50 5e-05
VFL382 (VFL382Q) /CSM/VF/VFL3-D/VFL382Q.Seq.d/ 48 2e-04
VFI328 (VFI328Q) /CSM/VF/VFI3-B/VFI328Q.Seq.d/ 48 2e-04

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence. 688 0.0 8
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 32 0.002 14
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 0.006 13
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 32 0.006 12
AC142310|AC142310.1 Pan troglodytes chromosome 7 clone RP43-45P13, complete sequence. 34 0.019 9
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4. 30 0.020 16
AC135078|AC135078.1 Homo sapiens chromosome 11 clone RP11-1160P17 map 11, LOW-PASS SEQUENCE SAMPLING. 40 0.024 5
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence. 36 0.050 12
AP001175|AP001175.3 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-761N15, WORKING DRAFT SEQUENCE, 17 unordered pieces. 36 0.056 5
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 32 0.063 12
dna update 2004. 6.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q550W6) RecName: Full=GDP-fucose transporter 1; AltName: Full=S... 414 e-114
AC115584_10(AC115584|pid:none) Dictyostelium discoideum chromoso... 412 e-114
BC086750_1(BC086750|pid:none) Danio rerio zgc:101867, mRNA (cDNA... 184 3e-45
BC154758_1(BC154758|pid:none) Danio rerio zgc:101867, mRNA (cDNA... 181 2e-44
(A6QM03) RecName: Full=GDP-fucose transporter 1; AltName: Full=S... 180 5e-44
CP001159_135(CP001159|pid:none) Thalassiosira pseudonana CCMP133... 179 9e-44
AK002182_1(AK002182|pid:none) Homo sapiens cDNA FLJ11320 fis, cl... 176 8e-43
(Q96A29) RecName: Full=GDP-fucose transporter 1; AltName: Full=S... 176 8e-43
AK315473_1(AK315473|pid:none) Homo sapiens cDNA, FLJ96534, highl... 176 8e-43
(Q8BLX4) RecName: Full=GDP-fucose transporter 1; AltName: Full=S... 167 3e-40
protein update 2009. 4.22
PSORT

psg: 0.97 gvh: 0.60 alm: 0.23 top: 0.60 tms: 0.47 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

48.0 %: plasma membrane
32.0 %: endoplasmic reticulum
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: cytoplasmic
4.0 %: nuclear

>> prediction for AFI263 is pla

5' end seq. ID AFI263F
5' end seq.
>AFI263F.Seq
CACTGTTGGCCTACTGGATTTTTTATTTTGTATTTGATCGTTGTTGTATTATCTCATTCC
TTTTATGTATTAATTATATATAAATATATATTAAAAAACACACACAATATATATTTTTTT
TTTTTCGCATNGAAAAAAAAAA----------
Length of 5' end seq. 142
3' end seq. ID AFI263Z
3' end seq.
>AFI263Z.Seq
----------TTAGAATATGTTGAAGTTTCTTTTTATCAAGTAGCAAGATCTTTAACAAT
TTGTTTTTCACTCATTTTAACATATATTGTACTCAAAAGTAAGACATCATATAGAGCAAC
AATGGCATGTTTAGTAGTATTCCTTGGATTTGTTTTAGGTAGTGCAGGTGAGGTTAATTT
TTCATGGTTAGGTATTATCTTTGGTTTATTATCAAGTTTTTTCGTTGCTTTATATTCAAT
TGCAGTTAAAAGAGTGTTACCAGCTGTTGATGGTAATGAATGGAGATTATCAATTTATAA
TACAGCAATTTCAATTGGTTTAATCTTCCCATTAATTTTAGTATCAGGTGAAGCCAATAC
AATTTTAGATGAACCATTATTATATTCAGGTACATTTTGGTTCTATATGACAGTTGCAGG
TTTAATGGGTTATTTGATTAGTATCTCTGTTTTCATGCAAATTAAACATACAAGTCCATT
AACAAATACCATTTCAGGTACTGTTAAGGCTTGTGTACAAACTATTTTAGCAGTTGTTTT
TTGGGGTAATCCAATTTCAACTCAAAATGCTGTTGGTATTTTATTAGTAATCGGTGGTAG
TTTTTGGTATTCAATGCAAAGATTCTTTGAAATGAAAAAATAATTTTTATAAAATTAATA
TAATATAAATAAATNTAGAAATAAAT
Length of 3' end seq. 676
Connected seq. ID AFI263P
Connected seq.
>AFI263P.Seq
CACTGTTGGCCTACTGGATTTTTTATTTTGTATTTGATCGTTGTTGTATTATCTCATTCC
TTTTATGTATTAATTATATATAAATATATATTAAAAAACACACACAATATATATTTTTTT
TTTTTCGCATNGAAAAAAAAAA----------TTAGAATATGTTGAAGTTTCTTTTTATC
AAGTAGCAAGATCTTTAACAATTTGTTTTTCACTCATTTTAACATATATTGTACTCAAAA
GTAAGACATCATATAGAGCAACAATGGCATGTTTAGTAGTATTCCTTGGATTTGTTTTAG
GTAGTGCAGGTGAGGTTAATTTTTCATGGTTAGGTATTATCTTTGGTTTATTATCAAGTT
TTTTCGTTGCTTTATATTCAATTGCAGTTAAAAGAGTGTTACCAGCTGTTGATGGTAATG
AATGGAGATTATCAATTTATAATACAGCAATTTCAATTGGTTTAATCTTCCCATTAATTT
TAGTATCAGGTGAAGCCAATACAATTTTAGATGAACCATTATTATATTCAGGTACATTTT
GGTTCTATATGACAGTTGCAGGTTTAATGGGTTATTTGATTAGTATCTCTGTTTTCATGC
AAATTAAACATACAAGTCCATTAACAAATACCATTTCAGGTACTGTTAAGGCTTGTGTAC
AAACTATTTTAGCAGTTGTTTTTTGGGGTAATCCAATTTCAACTCAAAATGCTGTTGGTA
TTTTATTAGTAATCGGTGGTAGTTTTTGGTATTCAATGCAAAGATTCTTTGAAATGAAAA
AATAATTTTTATAAAATTAATATAATATAAATAAATNTAGAAATAAAT
Length of connected seq. 818
Full length Seq ID -
Full length Seq. -
Length of full length seq. -